National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   334                                        
?                                            
A   30 12                       1     2 5 7    
C   9   1                                    
D   18 2   6 1   6           4               1
E   9 1     3                                
F   12         2         4                    
G   27   2   2   9                 2 3        
H                                            
I   6               3                   2    
K   21                 5     4   1 5   1      
L   45         3     2   24           2   1 1  
M   6               3 1 1             1 1    
N   21                       4       1        
P   16 1           2     4     8     6 2      
Q   12             1   1         2 1          
R   18           2     3         1 7          
S   15 1         3   1       2 1     6        
T   33 5             12 1     4 1     2 19      
V   18               3   1 1             5    
W   3   1                                    
Y   15             2                         4

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 England 12686 A 190415 190415
1 England 12687 A 190418 190417
2 England 12688 T 190419 190419
3 England 12689 A 190419 190419
4 England 12690 A 190419 190419
5 England 12691 T C 190419 190418 Asn4142Asn
6 England 12692 G 190419 190416
7 England 12693 A 190419 190419
8 England 12694 G A 190419 190416 Glu4143Glu
9 England 12695 C 190419 190419
10 England 12696 T 190419 190418
11 England 12697 T C 190419 190416 Leu4144Leu
12 England 12698 A G 190419 190417 Ser4145Gly
13 England 12699 G A 190419 190418 Ser4145Asn
14 England 12700 T C 190419 190418 Ser4145Ser
15 England 12701 C T 190419 190417 Pro4146Ser
16 England 12702 C 190419 190419
17 England 12703 T G,C 190419 190409 Pro4146Pro-p.Pro4146Pro
18 England 12704 G A 190419 190412 Val4147Ile
19 England 12705 T 190419 190417
20 England 12706 T A,C 190419 190412 Val4147Val-p.Val4147Val
21 England 12707 G 190420 190420
22 England 12708 C T 190420 190414 Ala4148Val
23 England 12709 A G 190420 190417 Ala4148Ala
24 England 12710 C T 190421 190154 Leu4149Leu
25 England 12711 T 190425 190422
26 England 12712 A G 190428 190420 Leu4149Leu
27 England 12713 C 190428 190421
28 England 12714 G A 190428 190425 Arg4150Gln
29 England 12715 A G,C 190428 190416 Arg4150Arg-p.Arg4150Arg
30 England 12716 C 190435 190434
31 England 12717 A 190435 190433
32 England 12718 G A 190439 190428 Gln4151Gln
33 England 12719 A C 190439 190435 Met4152Leu
34 England 12720 T 190439 190437
35 England 12721 G T 190440 190431 Met4152Ile
36 England 12722 T C 190442 190438 Ser4153Pro
37 England 12723 C 190442 190439
38 England 12724 T G 190442 190437 Ser4153Ser
39 England 12725 T 190442 190439
40 England 12726 G 190442 190439
41 England 12727 T 190442 190438
42 England 12728 G A 190442 190420 Ala4155Thr
43 England 12729 C T 190442 190435 Ala4155Val
44 England 12730 T C,A 190442 190424 Ala4155Ala-p.Ala4155Ala
45 England 12731 G A 190442 190428 Ala4156Thr
46 England 12732 C 190442 190435
47 England 12733 C T,A 190576 190076 Ala4156Ala-p.Ala4156Ala
48 England 12734 G A 190577 190558 Gly4157Ser
49 England 12735 G 190578 190578
50 England 12736 T C 190578 190568 Gly4157Gly
51 England 12737 A G 190578 190575 Thr4158Ala
52 England 12738 C T,A 190578 190550 Thr4158Ile-p.Thr4158Asn
53 England 12739 T C 190578 190575 Thr4158Thr
54 England 12740 A 190578 190577
55 England 12741 C T,A 190579 190449 Thr4159Ile-p.Thr4159Lys
56 England 12742 A G 190579 190544 Thr4159Thr
57 England 12743 C 190579 190578
58 England 12744 A 190579 190576
59 England 12745 A 190579 190579
60 England 12746 A C,G 190563 190559 Thr4161Pro-p.Thr4161Ala
61 England 12747 C T,A,G 190563 190507 Thr4161Asn-p.Thr4161Ser
62 England 12748 T C,A 190563 190561 Thr4161Thr-p.Thr4161Thr
63 England 12749 G A 190563 190560 Ala4162Thr
64 England 12750 C T 190563 190542 Ala4162Val
65 England 12751 T 190563 190560
66 England 12752 T 190563 190562
67 England 12753 G 190564 190564
68 England 12754 C T 190564 190532 Cys4163Cys
69 England 12755 A G 190564 190558 Thr4164Ala
70 England 12756 C T,A 190564 190455 Thr4164Ile-p.Thr4164Asn
71 England 12757 T C 190564 190560 Thr4164Thr
72 England 12758 G A 190565 190561 Asp4165Asn
73 England 12759 A G,C 190565 190483 Asp4165Gly-p.Asp4165Ala
74 England 12760 T C 190565 190495 Asp4165Asp
75 England 12761 G 190565 190565
76 England 12762 A G,C 190565 190563 Asp4166Gly-p.Asp4166Ala
77 England 12763 C T 190565 190526 Asp4166Asp
78 England 12764 A 190565 190565
79 England 12765 A 190565 190565
80 England 12766 T 190565 190563
81 England 12767 G 190565 190565
82 England 12768 C 190565 190565
83 England 12769 G T,A 190565 190496 Ala4168Ala-p.Ala4168Ala
84 England 12770 T G,C 190565 190563 Leu4169Val-p.Leu4169Leu
85 England 12771 T C 190565 190562 Leu4169Ser
86 England 12772 A G 190565 190557 Leu4169Leu
87 England 12773 G 190565 190565
88 England 12774 C T 190565 190559 Ala4170Val
89 England 12775 T C 190565 190559 Ala4170Ala
90 England 12776 T 190566 190565
91 England 12777 A 190566 190566
92 England 12778 C T 190566 190535 Tyr4171Tyr
93 England 12779 T C 190566 190560 Tyr4172His
94 England 12780 A 190437 190435
95 England 12781 C T 190435 190307 Tyr4172Tyr
96 England 12782 A 190435 190430
97 England 12783 A 190435 190432
98 England 12784 C T 190435 190331 Asn4173Asn
99 England 12785 A G 190435 190430 Thr4174Ala
100 England 12786 C T 190435 190389 Thr4174Ile
101 England 12787 A G,C 190435 190424 Thr4174Thr-p.Thr4174Thr
102 England 12788 A G 190435 190428 Thr4175Ala
103 England 12789 C T 190435 190293 Thr4175Ile
104 England 12790 A G,T,C 190434 190422 Thr4175Thr-p.Thr4175Thr
105 England 12791 A 190434 190433
106 England 12792 A G 190434 190406 Lys4176Arg
107 England 12793 G T,A 190436 190346 Lys4176Asn-p.Lys4176Lys
108 England 12794 G A 190436 190404 Gly4177Arg
109 England 12795 G A 190433 190427 Gly4177Glu
110 England 12796 A C,G 190424 190395 Gly4177Gly-p.Gly4177Gly
111 England 12797 G T,A 190419 190292 Gly4178Cys-p.Gly4178Ser
112 England 12798 G 190416 190413
113 England 12799 T 190415 190411
114 England 12800 A 190415 190410
115 England 12801 G A 190414 190398 Arg4179Lys
116 England 12802 G A 190413 190402 Arg4179Arg
117 England 12803 T C 190411 190398 Phe4180Leu
118 England 12804 T 190410 190406
119 England 12805 T C,A 190409 190398 Phe4180Leu-p.Phe4180Phe
120 England 12806 G 190425 190419
121 England 12807 T 190425 190421
122 England 12808 A 190425 190421
123 England 12809 C T,A 190425 189687 Leu4182Phe-p.Leu4182Ile
124 England 12810 T 190425 190418
125 England 12811 T A,C 190426 190416 Leu4182Leu-p.Leu4182Leu
126 England 12812 G 190426 190421
127 England 12813 C 190426 190420
128 England 12814 A 190426 190420
129 England 12815 C T 190426 190376 Leu4184Leu
130 England 12816 T 190426 190422
131 England 12817 G T,A 190426 190400 Leu4184Leu-p.Leu4184Leu
132 England 12818 T 190426 190424
133 England 12819 T 190426 190424
134 England 12820 A G 190426 190399 Leu4185Leu
135 England 12821 T G 190426 190420 Ser4186Ala
136 England 12822 C 190426 190420
137 England 12823 C T,A 190426 190300 Ser4186Ser-p.Ser4186Ser
138 England 12824 G A 190426 190392 Asp4187Asn
139 England 12825 A G 190426 190417 Asp4187Gly
140 England 12826 T G,C 190426 190409 Asp4187Glu-p.Asp4187Asp
141 England 12827 T C 190426 190413 Leu4188Leu
142 England 12828 T 190426 190424
143 England 12829 A 190426 190423
144 England 12830 C A 190426 190418 Gln4189Lys
145 England 12831 A G 190426 190419 Gln4189Arg
146 England 12832 G T,A 190426 190396 Gln4189His-p.Gln4189Gln
147 England 12833 G A 190426 190418 Asp4190Asn
148 England 12834 A G 190426 190421 Asp4190Gly
149 England 12835 T C 190426 190418 Asp4190Asp
150 England 12836 T C 190426 190422 Leu4191Leu
151 England 12837 T G,C 190426 190420 Leu4191Trp-p.Leu4191Ser
152 England 12838 G T,A 190426 190413 Leu4191Phe-p.Leu4191Leu
153 England 12839 A C 190426 190407 Lys4192Gln
154 England 12840 A 190426 190424
155 England 12841 A G 190426 190421 Lys4192Lys
156 England 12842 T 190426 190423
157 England 12843 G 190426 190421
158 England 12844 G T 190426 190421 Trp4193Cys
159 England 12845 G A,T 190426 190411 Ala4194Thr-p.Ala4194Ser
160 England 12846 C T 190426 190417 Ala4194Val
161 England 12847 T C 190426 190420 Ala4194Ala
162 England 12848 A G 190426 190414 Arg4195Gly
163 England 12849 G A 190426 190408 Arg4195Lys
164 England 12850 A G 190426 190413 Arg4195Arg
165 England 12851 T 190426 190417
166 England 12852 T 190426 190415
167 England 12853 C T 190426 190407 Phe4196Phe
168 England 12854 C T,A,G 190426 190374 Pro4197Thr-p.Pro4197Ala
169 England 12855 C T,A 190426 190392 Pro4197Leu-p.Pro4197His
170 England 12856 T C,G,A 190426 190409 Pro4197Pro-p.Pro4197Pro
171 England 12857 A 190426 190419
172 England 12858 A G 190425 190416 Lys4198Arg
173 England 12859 G T,A 190425 190414 Lys4198Asn-p.Lys4198Lys
174 England 12860 A G 190425 190416 Ser4199Gly
175 England 12861 G T 190425 190356 Ser4199Ile
176 England 12862 T C 190425 190411 Ser4199Ser
177 England 12863 G 190425 190415
178 England 12864 A G 190425 190406 Asp4200Gly
179 England 12865 T C 190425 190062 Asp4200Asp
180 England 12866 G A 190425 190408 Gly4201Arg
181 England 12867 G A 190424 190414 Gly4201Glu
182 England 12868 A G 190424 190412 Gly4201Gly
183 England 12869 A 190424 190413
184 England 12870 C T 190424 190371 Thr4202Ile
185 England 12871 T G,C,A 190424 190405 Thr4202Thr-p.Thr4202Thr
186 England 12872 G A 190424 190375 Gly4203Ser
187 England 12873 G 190424 190415
188 England 12874 T C 190424 190414 Gly4203Gly
189 England 12875 A 190427 190420
190 England 12876 C T,A 190427 190410 Thr4204Ile-p.Thr4204Asn
191 England 12877 T C 190427 190408 Thr4204Thr
192 England 12878 A G 190448 190435 Ile4205Val
193 England 12879 T 190448 190443
194 England 12880 C T,A 190448 190265 Ile4205Ile-p.Ile4205Ile
195 England 12881 T 190448 190443
196 England 12882 A 190448 190443
197 England 12883 T C 190448 190426 Tyr4206Tyr
198 England 12884 A T 190448 190440 Thr4207Ser
199 England 12885 C T 190448 190398 Thr4207Ile
200 England 12886 A G,C 190448 190416 Thr4207Thr-p.Thr4207Thr
201 England 12887 G 190448 190437
202 England 12888 A C 190448 190430 Glu4208Ala
203 England 12889 A G 190448 190416 Glu4208Glu
204 England 12890 C T 190447 190428 Leu4209Leu
205 England 12891 T 190447 190434
206 England 12892 G A,T 190447 190424 Leu4209Leu-p.Leu4209Leu
207 England 12893 G 190447 190437
208 England 12894 A 190447 190437
209 England 12895 A G 190447 190436 Glu4210Glu
210 England 12896 C T,A 190450 190382 Pro4211Ser-p.Pro4211Thr
211 England 12897 C T 190450 190434 Pro4211Leu
212 England 12898 A G 190450 190440 Pro4211Pro
213 England 12899 C T 190450 190443 Pro4212Ser
214 England 12900 C 190450 190441
215 England 12901 T C,G 190449 190439 Pro4212Pro-p.Pro4212Pro
216 England 12902 T 190449 190441
217 England 12903 G 190449 190438
218 England 12904 T 190449 190443
219 England 12905 A G 190449 190437 Arg4214Gly
220 England 12906 G A 190449 190440 Arg4214Lys
221 England 12907 G A 190449 190378 Arg4214Arg
222 England 12908 T 190449 190438
223 England 12909 T 190449 190442
224 England 12910 T A 190449 190412 Phe4215Leu
225 England 12911 G A 190449 190396 Val4216Ile
226 England 12912 T 190449 190443
227 England 12913 T C 190449 190439 Val4216Val
228 England 12914 A 190449 190445
229 England 12915 C T 190449 190315 Thr4217Ile
230 England 12916 A G 190449 190439 Thr4217Thr
231 England 12917 G A,T 190449 190408 Asp4218Asn-p.Asp4218Tyr
232 England 12918 A G 190449 190441 Asp4218Gly
233 England 12919 C T 190449 190360 Asp4218Asp
234 England 12920 A 190449 190444
235 England 12921 C T 190449 190432 Thr4219Ile
236 England 12922 A G 190449 190443 Thr4219Thr
237 England 12923 C T 190449 190410 Pro4220Ser
238 England 12924 C T,A 190449 190376 Pro4220Leu-p.Pro4220His
239 England 12925 T 190449 190443
240 England 12926 A 190449 190446
241 England 12927 A G,C 190448 190442 Lys4221Arg-p.Lys4221Thr
242 England 12928 A G,C 190448 190428 Lys4221Asn-p.Lys4221Lys
243 England 12929 G T 190447 190439 Gly4222Cys
244 England 12930 G 190447 190445
245 England 12931 T C 190446 190443 Gly4222Gly
246 England 12932 C T 190437 190416 Pro4223Ser
247 England 12933 C T 190437 190336 Pro4223Leu
248 England 12934 T 190437 190421
249 England 12935 A 190437 190418
250 England 12936 A G 190437 190415 Lys4224Arg
251 England 12937 A 190437 190421
252 England 12938 G T,A 190437 190415 Val4225Leu-p.Val4225Met
253 England 12939 T 190437 190417
254 England 12940 G T 190437 190362 Val4225Val
255 England 12941 A 190436 190416
256 England 12942 A 190436 190418
257 England 12943 G T 190436 190417 Lys4226Asn
258 England 12944 T C 190436 190416 Tyr4227His
259 England 12945 A 190436 190418
260 England 12946 T 190435 190413
261 England 12947 T C 190435 190413 Leu4228Leu
262 England 12948 T 190435 190417
263 England 12949 A G 190435 190388 Leu4228Leu
264 England 12950 T 190435 190416
265 England 12951 A 190435 190413
266 England 12952 C T 190435 190403 Tyr4229Tyr
267 England 12953 T C 190433 190409 Phe4230Leu
268 England 12954 T 190433 190412
269 England 12955 T 190433 190410
270 England 12956 A G 190433 190413 Ile4231Val
271 England 12957 T 190433 190413
272 England 12958 T C 190433 190405 Ile4231Ile
273 England 12959 A 190433 190407
274 England 12960 A G 190433 190384 Lys4232Arg
275 England 12961 A G 190433 190408 Lys4232Lys
276 England 12962 G 190433 190417
277 England 12963 G 190433 190417
278 England 12964 A G,T 190433 190382 Gly4233Gly-p.Gly4233Gly
279 England 12965 T 190433 190417
280 England 12966 T 190434 190419
281 England 12967 A 190434 190420
282 England 12968 A 190433 190420
283 England 12969 A 190433 190420
284 England 12970 C T 190433 188787 Asn4235Asn
285 England 12971 A 190432 190418
286 England 12972 A G 190432 190420 Asn4236Ser
287 England 12973 C T 190432 190397 Asn4236Asn
288 England 12974 C T,A 190432 190402 Leu4237Ile-p.Leu4237Leu
289 England 12975 T 190432 190422
290 England 12976 A T,G 190432 190418 Leu4237Leu-p.Leu4237Leu
291 England 12977 A 190431 190424
292 England 12978 A 190431 190429
293 England 12979 T 190431 190427
294 England 12980 A 190429 190424
295 England 12981 G 190429 190426
296 England 12982 A G 190429 190428 Arg4239Arg
297 England 12983 G 190429 190425
298 England 12984 G 190428 190428
299 England 12985 T 190426 190423
300 England 12986 A G 190426 190416 Met4241Val
301 England 12987 T C,A 190425 190418 Met4241Thr-p.Met4241Lys
302 England 12988 G T,A 190425 187736 Met4241Ile-p.Met4241Ile
303 England 12989 G A 190425 190421 Val4242Ile
304 England 12990 T 190425 190425
305 England 12991 A T 190425 190423 Val4242Val
306 England 12992 C T 190425 190422 Leu4243Phe
307 England 12993 T 190425 190424
308 England 12994 T 190425 190424
309 England 12995 G 190425 190424
310 England 12996 G 190425 190424
311 England 12997 T A 190425 190421 Gly4244Gly
312 England 12998 A G 190424 190421 Ser4245Gly
313 England 12999 G A 190424 190418 Ser4245Asn
314 England 13000 T C 190424 190416 Ser4245Ser
315 England 13001 T 190424 190421
316 England 13002 T 190424 190424
317 England 13003 A G 190424 190417 Leu4246Leu
318 England 13004 G T,A 190424 190397 Ala4247Ser-p.Ala4247Thr
319 England 13005 C T 190424 190414 Ala4247Val
320 England 13006 T C,A 190424 190327 Ala4247Ala-p.Ala4247Ala
321 England 13007 G C 190424 190422 Ala4248Pro
322 England 13008 C T 190424 190421 Ala4248Val
323 England 13009 C T 190424 190233 Ala4248Ala
324 England 13010 A 190424 190424
325 England 13011 C T 190424 190227 Thr4249Ile
326 England 13012 A G 190424 190420 Thr4249Thr
327 England 13013 G 190424 190423
328 England 13014 T 190423 190422
329 England 13015 A 190423 190422
330 England 13016 C 190423 190423
331 England 13017 G 190423 190423
332 England 13018 T C 190423 190419 Arg4251Arg
333 England 13019 C T 190422 190138 Leu4252Leu
334 England 13020 T 190422 190422
335 England 13021 A 190422 190422
336 England 13022 C 190422 190421
337 England 13023 A 190421 190421
338 England 13024 A 190420 190420