National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15         1                            
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 El_Salvador 12686 A 6 6
1 El_Salvador 12687 A 6 6
2 El_Salvador 12688 T 6 6
3 El_Salvador 12689 A 6 6
4 El_Salvador 12690 A 6 6
5 El_Salvador 12691 T 6 6
6 El_Salvador 12692 G 6 6
7 El_Salvador 12693 A 6 6
8 El_Salvador 12694 G 6 6
9 El_Salvador 12695 C 6 6
10 El_Salvador 12696 T 6 6
11 El_Salvador 12697 T 6 6
12 El_Salvador 12698 A 6 6
13 El_Salvador 12699 G 6 6
14 El_Salvador 12700 T 6 6
15 El_Salvador 12701 C 6 6
16 El_Salvador 12702 C 6 6
17 El_Salvador 12703 T 6 6
18 El_Salvador 12704 G 6 6
19 El_Salvador 12705 T 6 6
20 El_Salvador 12706 T 6 6
21 El_Salvador 12707 G 6 6
22 El_Salvador 12708 C 6 6
23 El_Salvador 12709 A 6 6
24 El_Salvador 12710 C 6 6
25 El_Salvador 12711 T 6 6
26 El_Salvador 12712 A 6 6
27 El_Salvador 12713 C 6 6
28 El_Salvador 12714 G 6 6
29 El_Salvador 12715 A 6 6
30 El_Salvador 12716 C 6 6
31 El_Salvador 12717 A 6 6
32 El_Salvador 12718 G 6 6
33 El_Salvador 12719 A 6 6
34 El_Salvador 12720 T 6 6
35 El_Salvador 12721 G 6 6
36 El_Salvador 12722 T 6 6
37 El_Salvador 12723 C T 6 5 Ser4153Phe
38 El_Salvador 12724 T 6 6
39 El_Salvador 12725 T 6 6
40 El_Salvador 12726 G 6 6
41 El_Salvador 12727 T 6 6
42 El_Salvador 12728 G 6 6
43 El_Salvador 12729 C 6 6
44 El_Salvador 12730 T 6 6
45 El_Salvador 12731 G 6 6
46 El_Salvador 12732 C 6 6
47 El_Salvador 12733 C 6 6
48 El_Salvador 12734 G 6 6
49 El_Salvador 12735 G 6 6
50 El_Salvador 12736 T 6 6
51 El_Salvador 12737 A 6 6
52 El_Salvador 12738 C 6 6
53 El_Salvador 12739 T 6 6
54 El_Salvador 12740 A 6 6
55 El_Salvador 12741 C 6 6
56 El_Salvador 12742 A 6 6
57 El_Salvador 12743 C 6 6
58 El_Salvador 12744 A 6 6
59 El_Salvador 12745 A 6 6
60 El_Salvador 12746 A 6 6
61 El_Salvador 12747 C 6 6
62 El_Salvador 12748 T 6 6
63 El_Salvador 12749 G 6 6
64 El_Salvador 12750 C 6 6
65 El_Salvador 12751 T 6 6
66 El_Salvador 12752 T 6 6
67 El_Salvador 12753 G 6 6
68 El_Salvador 12754 C 6 6
69 El_Salvador 12755 A 6 6
70 El_Salvador 12756 C 6 6
71 El_Salvador 12757 T 6 6
72 El_Salvador 12758 G 6 6
73 El_Salvador 12759 A 6 6
74 El_Salvador 12760 T 6 6
75 El_Salvador 12761 G 6 6
76 El_Salvador 12762 A 6 6
77 El_Salvador 12763 C 6 6
78 El_Salvador 12764 A 6 6
79 El_Salvador 12765 A 6 6
80 El_Salvador 12766 T 6 6
81 El_Salvador 12767 G 6 6
82 El_Salvador 12768 C 6 6
83 El_Salvador 12769 G 6 6
84 El_Salvador 12770 T 6 6
85 El_Salvador 12771 T 6 6
86 El_Salvador 12772 A 6 6
87 El_Salvador 12773 G 6 6
88 El_Salvador 12774 C 6 6
89 El_Salvador 12775 T 6 6
90 El_Salvador 12776 T 6 6
91 El_Salvador 12777 A 6 6
92 El_Salvador 12778 C 6 6
93 El_Salvador 12779 T 6 6
94 El_Salvador 12780 A 6 6
95 El_Salvador 12781 C 6 6
96 El_Salvador 12782 A 6 6
97 El_Salvador 12783 A 6 6
98 El_Salvador 12784 C 6 6
99 El_Salvador 12785 A 6 6
100 El_Salvador 12786 C 6 6
101 El_Salvador 12787 A 6 6
102 El_Salvador 12788 A 6 6
103 El_Salvador 12789 C 6 6
104 El_Salvador 12790 A 6 6
105 El_Salvador 12791 A 6 6
106 El_Salvador 12792 A 6 6
107 El_Salvador 12793 G 6 6
108 El_Salvador 12794 G 6 6
109 El_Salvador 12795 G 6 6
110 El_Salvador 12796 A 6 6
111 El_Salvador 12797 G 6 6
112 El_Salvador 12798 G 6 6
113 El_Salvador 12799 T 6 6
114 El_Salvador 12800 A 6 6
115 El_Salvador 12801 G 6 6
116 El_Salvador 12802 G 6 6
117 El_Salvador 12803 T 6 6
118 El_Salvador 12804 T 6 6
119 El_Salvador 12805 T 6 6
120 El_Salvador 12806 G 6 6
121 El_Salvador 12807 T 6 6
122 El_Salvador 12808 A 6 6
123 El_Salvador 12809 C 6 6
124 El_Salvador 12810 T 6 6
125 El_Salvador 12811 T 6 6
126 El_Salvador 12812 G 6 6
127 El_Salvador 12813 C 6 6
128 El_Salvador 12814 A 6 6
129 El_Salvador 12815 C 6 6
130 El_Salvador 12816 T 6 6
131 El_Salvador 12817 G 6 6
132 El_Salvador 12818 T 6 6
133 El_Salvador 12819 T 6 6
134 El_Salvador 12820 A 6 6
135 El_Salvador 12821 T 6 6
136 El_Salvador 12822 C 6 6
137 El_Salvador 12823 C 6 6
138 El_Salvador 12824 G 6 6
139 El_Salvador 12825 A 6 6
140 El_Salvador 12826 T 6 6
141 El_Salvador 12827 T 6 6
142 El_Salvador 12828 T 6 6
143 El_Salvador 12829 A 6 6
144 El_Salvador 12830 C 6 6
145 El_Salvador 12831 A 6 6
146 El_Salvador 12832 G 6 6
147 El_Salvador 12833 G 6 6
148 El_Salvador 12834 A 6 6
149 El_Salvador 12835 T 6 6
150 El_Salvador 12836 T 6 6
151 El_Salvador 12837 T 6 6
152 El_Salvador 12838 G 6 6
153 El_Salvador 12839 A 6 6
154 El_Salvador 12840 A 6 6
155 El_Salvador 12841 A 6 6
156 El_Salvador 12842 T 6 6
157 El_Salvador 12843 G 6 6
158 El_Salvador 12844 G 6 6
159 El_Salvador 12845 G 6 6
160 El_Salvador 12846 C 6 6
161 El_Salvador 12847 T 6 6
162 El_Salvador 12848 A 6 6
163 El_Salvador 12849 G 6 6
164 El_Salvador 12850 A 6 6
165 El_Salvador 12851 T 6 6
166 El_Salvador 12852 T 6 6
167 El_Salvador 12853 C 6 6
168 El_Salvador 12854 C 6 6
169 El_Salvador 12855 C 6 6
170 El_Salvador 12856 T 6 6
171 El_Salvador 12857 A 6 6
172 El_Salvador 12858 A 6 6
173 El_Salvador 12859 G 6 6
174 El_Salvador 12860 A 6 6
175 El_Salvador 12861 G 6 6
176 El_Salvador 12862 T 6 6
177 El_Salvador 12863 G 6 6
178 El_Salvador 12864 A 6 6
179 El_Salvador 12865 T 6 6
180 El_Salvador 12866 G 6 6
181 El_Salvador 12867 G 6 6
182 El_Salvador 12868 A 6 6
183 El_Salvador 12869 A 6 6
184 El_Salvador 12870 C 6 6
185 El_Salvador 12871 T 6 6
186 El_Salvador 12872 G 6 6
187 El_Salvador 12873 G 6 6
188 El_Salvador 12874 T 6 6
189 El_Salvador 12875 A 6 6
190 El_Salvador 12876 C 6 6
191 El_Salvador 12877 T 6 6
192 El_Salvador 12878 A 6 6
193 El_Salvador 12879 T 6 6
194 El_Salvador 12880 C 6 6
195 El_Salvador 12881 T 6 6
196 El_Salvador 12882 A 6 6
197 El_Salvador 12883 T 6 6
198 El_Salvador 12884 A 6 6
199 El_Salvador 12885 C 6 6
200 El_Salvador 12886 A 6 6
201 El_Salvador 12887 G 6 6
202 El_Salvador 12888 A 6 6
203 El_Salvador 12889 A 6 6
204 El_Salvador 12890 C 6 6
205 El_Salvador 12891 T 6 6
206 El_Salvador 12892 G 6 6
207 El_Salvador 12893 G 6 6
208 El_Salvador 12894 A 6 6
209 El_Salvador 12895 A 6 6
210 El_Salvador 12896 C 6 6
211 El_Salvador 12897 C 6 6
212 El_Salvador 12898 A 6 6
213 El_Salvador 12899 C 6 6
214 El_Salvador 12900 C 6 6
215 El_Salvador 12901 T 6 6
216 El_Salvador 12902 T 6 6
217 El_Salvador 12903 G 6 6
218 El_Salvador 12904 T 6 6
219 El_Salvador 12905 A 6 6
220 El_Salvador 12906 G 6 6
221 El_Salvador 12907 G 6 6
222 El_Salvador 12908 T 6 6
223 El_Salvador 12909 T 6 6
224 El_Salvador 12910 T 6 6
225 El_Salvador 12911 G 6 6
226 El_Salvador 12912 T 6 6
227 El_Salvador 12913 T 6 6
228 El_Salvador 12914 A 6 6
229 El_Salvador 12915 C 6 6
230 El_Salvador 12916 A 6 6
231 El_Salvador 12917 G 6 6
232 El_Salvador 12918 A 6 6
233 El_Salvador 12919 C 6 6
234 El_Salvador 12920 A 6 6
235 El_Salvador 12921 C 6 6
236 El_Salvador 12922 A 6 6
237 El_Salvador 12923 C 6 6
238 El_Salvador 12924 C 6 6
239 El_Salvador 12925 T 6 6
240 El_Salvador 12926 A 6 6
241 El_Salvador 12927 A 6 6
242 El_Salvador 12928 A 6 6
243 El_Salvador 12929 G 6 6
244 El_Salvador 12930 G 6 6
245 El_Salvador 12931 T 6 6
246 El_Salvador 12932 C 6 6
247 El_Salvador 12933 C 6 6
248 El_Salvador 12934 T 6 6
249 El_Salvador 12935 A 6 6
250 El_Salvador 12936 A 6 6
251 El_Salvador 12937 A 6 6
252 El_Salvador 12938 G 6 6
253 El_Salvador 12939 T 6 6
254 El_Salvador 12940 G 6 6
255 El_Salvador 12941 A 6 6
256 El_Salvador 12942 A 6 6
257 El_Salvador 12943 G 6 6
258 El_Salvador 12944 T 6 6
259 El_Salvador 12945 A 6 6
260 El_Salvador 12946 T 6 6
261 El_Salvador 12947 T 6 6
262 El_Salvador 12948 T 6 6
263 El_Salvador 12949 A 6 6
264 El_Salvador 12950 T 6 6
265 El_Salvador 12951 A 6 6
266 El_Salvador 12952 C 6 6
267 El_Salvador 12953 T 6 6
268 El_Salvador 12954 T 6 6
269 El_Salvador 12955 T 6 6
270 El_Salvador 12956 A 6 6
271 El_Salvador 12957 T 6 6
272 El_Salvador 12958 T 6 6
273 El_Salvador 12959 A 6 6
274 El_Salvador 12960 A 6 6
275 El_Salvador 12961 A 6 6
276 El_Salvador 12962 G 6 6
277 El_Salvador 12963 G 6 6
278 El_Salvador 12964 A 6 6
279 El_Salvador 12965 T 6 6
280 El_Salvador 12966 T 6 6
281 El_Salvador 12967 A 6 6
282 El_Salvador 12968 A 6 6
283 El_Salvador 12969 A 6 6
284 El_Salvador 12970 C 6 6
285 El_Salvador 12971 A 6 6
286 El_Salvador 12972 A 6 6
287 El_Salvador 12973 C 6 6
288 El_Salvador 12974 C 6 6
289 El_Salvador 12975 T 6 6
290 El_Salvador 12976 A 6 6
291 El_Salvador 12977 A 6 6
292 El_Salvador 12978 A 6 6
293 El_Salvador 12979 T 6 6
294 El_Salvador 12980 A 6 6
295 El_Salvador 12981 G 6 6
296 El_Salvador 12982 A 6 6
297 El_Salvador 12983 G 6 6
298 El_Salvador 12984 G 6 6
299 El_Salvador 12985 T 6 6
300 El_Salvador 12986 A 6 6
301 El_Salvador 12987 T 6 6
302 El_Salvador 12988 G 6 6
303 El_Salvador 12989 G 6 6
304 El_Salvador 12990 T 6 6
305 El_Salvador 12991 A 6 6
306 El_Salvador 12992 C 6 6
307 El_Salvador 12993 T 6 6
308 El_Salvador 12994 T 6 6
309 El_Salvador 12995 G 6 6
310 El_Salvador 12996 G 6 6
311 El_Salvador 12997 T 6 6
312 El_Salvador 12998 A 6 6
313 El_Salvador 12999 G 6 6
314 El_Salvador 13000 T 6 6
315 El_Salvador 13001 T 6 6
316 El_Salvador 13002 T 6 6
317 El_Salvador 13003 A 6 6
318 El_Salvador 13004 G 6 6
319 El_Salvador 13005 C 6 6
320 El_Salvador 13006 T 6 6
321 El_Salvador 13007 G 6 6
322 El_Salvador 13008 C 6 6
323 El_Salvador 13009 C 6 6
324 El_Salvador 13010 A 6 6
325 El_Salvador 13011 C 6 6
326 El_Salvador 13012 A 6 6
327 El_Salvador 13013 G 6 6
328 El_Salvador 13014 T 6 6
329 El_Salvador 13015 A 6 6
330 El_Salvador 13016 C 6 6
331 El_Salvador 13017 G 6 6
332 El_Salvador 13018 T 6 6
333 El_Salvador 13019 C 6 6
334 El_Salvador 13020 T 6 6
335 El_Salvador 13021 A 6 6
336 El_Salvador 13022 C 6 6
337 El_Salvador 13023 A 6 6
338 El_Salvador 13024 A 6 6