National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                                    
C   9   1                                  
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                 2                    
M   6                                      
N   21                     1                
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                               1      
V   18                                 1    
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Egypt 12686 A 364 364
1 Egypt 12687 A 364 364
2 Egypt 12688 T 364 364
3 Egypt 12689 A 364 364
4 Egypt 12690 A 364 364
5 Egypt 12691 T 364 364
6 Egypt 12692 G 364 364
7 Egypt 12693 A 364 364
8 Egypt 12694 G 364 364
9 Egypt 12695 C 364 364
10 Egypt 12696 T 364 364
11 Egypt 12697 T 364 364
12 Egypt 12698 A 364 364
13 Egypt 12699 G 364 364
14 Egypt 12700 T 364 364
15 Egypt 12701 C 364 364
16 Egypt 12702 C 364 364
17 Egypt 12703 T 364 364
18 Egypt 12704 G 364 364
19 Egypt 12705 T 364 364
20 Egypt 12706 T 364 364
21 Egypt 12707 G 364 364
22 Egypt 12708 C 364 364
23 Egypt 12709 A 364 364
24 Egypt 12710 C 364 364
25 Egypt 12711 T 364 364
26 Egypt 12712 A 364 364
27 Egypt 12713 C 364 364
28 Egypt 12714 G 364 364
29 Egypt 12715 A 364 364
30 Egypt 12716 C 364 364
31 Egypt 12717 A 364 364
32 Egypt 12718 G 364 364
33 Egypt 12719 A 364 364
34 Egypt 12720 T 364 364
35 Egypt 12721 G 364 364
36 Egypt 12722 T 364 364
37 Egypt 12723 C 364 364
38 Egypt 12724 T 364 364
39 Egypt 12725 T 364 364
40 Egypt 12726 G 364 364
41 Egypt 12727 T 364 364
42 Egypt 12728 G 364 364
43 Egypt 12729 C 364 364
44 Egypt 12730 T 364 364
45 Egypt 12731 G 364 364
46 Egypt 12732 C 364 364
47 Egypt 12733 C A 364 363 Ala4156Ala
48 Egypt 12734 G 364 364
49 Egypt 12735 G 364 364
50 Egypt 12736 T 364 364
51 Egypt 12737 A 364 364
52 Egypt 12738 C 364 364
53 Egypt 12739 T 364 364
54 Egypt 12740 A 365 365
55 Egypt 12741 C 365 365
56 Egypt 12742 A 365 365
57 Egypt 12743 C 365 365
58 Egypt 12744 A 365 364
59 Egypt 12745 A 365 364
60 Egypt 12746 A 365 364
61 Egypt 12747 C 365 365
62 Egypt 12748 T 365 364
63 Egypt 12749 G 365 365
64 Egypt 12750 C 365 365
65 Egypt 12751 T 365 365
66 Egypt 12752 T 365 365
67 Egypt 12753 G 365 365
68 Egypt 12754 C T 365 364 Cys4163Cys
69 Egypt 12755 A 365 365
70 Egypt 12756 C 365 365
71 Egypt 12757 T 365 365
72 Egypt 12758 G 365 365
73 Egypt 12759 A 365 365
74 Egypt 12760 T 365 365
75 Egypt 12761 G 365 365
76 Egypt 12762 A 365 365
77 Egypt 12763 C 365 365
78 Egypt 12764 A 365 365
79 Egypt 12765 A 365 365
80 Egypt 12766 T 365 365
81 Egypt 12767 G 365 365
82 Egypt 12768 C 365 365
83 Egypt 12769 G 365 365
84 Egypt 12770 T 365 365
85 Egypt 12771 T 365 365
86 Egypt 12772 A 365 365
87 Egypt 12773 G 365 365
88 Egypt 12774 C 365 365
89 Egypt 12775 T 365 365
90 Egypt 12776 T 365 365
91 Egypt 12777 A 365 365
92 Egypt 12778 C 365 365
93 Egypt 12779 T 365 365
94 Egypt 12780 A 365 365
95 Egypt 12781 C 365 365
96 Egypt 12782 A 365 365
97 Egypt 12783 A 365 365
98 Egypt 12784 C T 365 362 Asn4173Asn
99 Egypt 12785 A 365 365
100 Egypt 12786 C 365 365
101 Egypt 12787 A T 365 364 Thr4174Thr
102 Egypt 12788 A 365 365
103 Egypt 12789 C 365 365
104 Egypt 12790 A 365 365
105 Egypt 12791 A 365 365
106 Egypt 12792 A 365 365
107 Egypt 12793 G 365 365
108 Egypt 12794 G 365 365
109 Egypt 12795 G 365 365
110 Egypt 12796 A 365 365
111 Egypt 12797 G 365 365
112 Egypt 12798 G 365 365
113 Egypt 12799 T 365 365
114 Egypt 12800 A 365 365
115 Egypt 12801 G 365 365
116 Egypt 12802 G 365 365
117 Egypt 12803 T 365 365
118 Egypt 12804 T 365 365
119 Egypt 12805 T 365 365
120 Egypt 12806 G 365 365
121 Egypt 12807 T 365 365
122 Egypt 12808 A 365 365
123 Egypt 12809 C 365 365
124 Egypt 12810 T 365 365
125 Egypt 12811 T 365 365
126 Egypt 12812 G 365 365
127 Egypt 12813 C 365 365
128 Egypt 12814 A 365 365
129 Egypt 12815 C T 365 362 Leu4184Leu
130 Egypt 12816 T 365 365
131 Egypt 12817 G T 365 364 Leu4184Leu
132 Egypt 12818 T 365 365
133 Egypt 12819 T 365 365
134 Egypt 12820 A 365 365
135 Egypt 12821 T 365 365
136 Egypt 12822 C 365 365
137 Egypt 12823 C 365 365
138 Egypt 12824 G 365 365
139 Egypt 12825 A 365 365
140 Egypt 12826 T 365 364
141 Egypt 12827 T 365 365
142 Egypt 12828 T 365 365
143 Egypt 12829 A 365 365
144 Egypt 12830 C 365 365
145 Egypt 12831 A 365 365
146 Egypt 12832 G 365 365
147 Egypt 12833 G 365 365
148 Egypt 12834 A 365 365
149 Egypt 12835 T 365 365
150 Egypt 12836 T 365 365
151 Egypt 12837 T 365 365
152 Egypt 12838 G 365 365
153 Egypt 12839 A 365 365
154 Egypt 12840 A 365 365
155 Egypt 12841 A 365 365
156 Egypt 12842 T 365 365
157 Egypt 12843 G 365 365
158 Egypt 12844 G 365 365
159 Egypt 12845 G 365 365
160 Egypt 12846 C 365 365
161 Egypt 12847 T 365 365
162 Egypt 12848 A 365 365
163 Egypt 12849 G 365 365
164 Egypt 12850 A 365 365
165 Egypt 12851 T 365 365
166 Egypt 12852 T 365 365
167 Egypt 12853 C 365 365
168 Egypt 12854 C 365 365
169 Egypt 12855 C 365 365
170 Egypt 12856 T 365 365
171 Egypt 12857 A 365 365
172 Egypt 12858 A 365 365
173 Egypt 12859 G 365 365
174 Egypt 12860 A 365 365
175 Egypt 12861 G 365 365
176 Egypt 12862 T 365 365
177 Egypt 12863 G 365 365
178 Egypt 12864 A 365 365
179 Egypt 12865 T 365 365
180 Egypt 12866 G 365 365
181 Egypt 12867 G 365 365
182 Egypt 12868 A 365 365
183 Egypt 12869 A 365 365
184 Egypt 12870 C 365 365
185 Egypt 12871 T 365 365
186 Egypt 12872 G 365 365
187 Egypt 12873 G 365 365
188 Egypt 12874 T 365 365
189 Egypt 12875 A 365 365
190 Egypt 12876 C 365 365
191 Egypt 12877 T 365 365
192 Egypt 12878 A 365 365
193 Egypt 12879 T 365 365
194 Egypt 12880 C 365 365
195 Egypt 12881 T 365 365
196 Egypt 12882 A 365 365
197 Egypt 12883 T 365 365
198 Egypt 12884 A 365 365
199 Egypt 12885 C 365 365
200 Egypt 12886 A 365 365
201 Egypt 12887 G 365 365
202 Egypt 12888 A 365 365
203 Egypt 12889 A 365 365
204 Egypt 12890 C 365 365
205 Egypt 12891 T 365 365
206 Egypt 12892 G 365 365
207 Egypt 12893 G 365 365
208 Egypt 12894 A 365 365
209 Egypt 12895 A 365 365
210 Egypt 12896 C 365 365
211 Egypt 12897 C 365 365
212 Egypt 12898 A 365 365
213 Egypt 12899 C 365 365
214 Egypt 12900 C 365 365
215 Egypt 12901 T 365 365
216 Egypt 12902 T 365 365
217 Egypt 12903 G 365 365
218 Egypt 12904 T 365 365
219 Egypt 12905 A 365 365
220 Egypt 12906 G 365 365
221 Egypt 12907 G 365 365
222 Egypt 12908 T 365 365
223 Egypt 12909 T 365 365
224 Egypt 12910 T 365 365
225 Egypt 12911 G 365 365
226 Egypt 12912 T 365 365
227 Egypt 12913 T 365 365
228 Egypt 12914 A 365 365
229 Egypt 12915 C 365 365
230 Egypt 12916 A 365 365
231 Egypt 12917 G 365 365
232 Egypt 12918 A 365 365
233 Egypt 12919 C 365 365
234 Egypt 12920 A 365 365
235 Egypt 12921 C 365 365
236 Egypt 12922 A 365 365
237 Egypt 12923 C 365 365
238 Egypt 12924 C 365 365
239 Egypt 12925 T 365 365
240 Egypt 12926 A 365 365
241 Egypt 12927 A 365 365
242 Egypt 12928 A 365 365
243 Egypt 12929 G 365 365
244 Egypt 12930 G 365 365
245 Egypt 12931 T 365 365
246 Egypt 12932 C 365 365
247 Egypt 12933 C 365 365
248 Egypt 12934 T 365 365
249 Egypt 12935 A 365 365
250 Egypt 12936 A 365 365
251 Egypt 12937 A 365 365
252 Egypt 12938 G 365 364
253 Egypt 12939 T 364 364
254 Egypt 12940 G 364 364
255 Egypt 12941 A 364 364
256 Egypt 12942 A 364 364
257 Egypt 12943 G 364 364
258 Egypt 12944 T 364 364
259 Egypt 12945 A 364 364
260 Egypt 12946 T 364 364
261 Egypt 12947 T 364 364
262 Egypt 12948 T 364 364
263 Egypt 12949 A 364 364
264 Egypt 12950 T 364 364
265 Egypt 12951 A 364 364
266 Egypt 12952 C 364 364
267 Egypt 12953 T 364 364
268 Egypt 12954 T 364 364
269 Egypt 12955 T 364 364
270 Egypt 12956 A 364 364
271 Egypt 12957 T 364 364
272 Egypt 12958 T 364 364
273 Egypt 12959 A 364 364
274 Egypt 12960 A 364 364
275 Egypt 12961 A 364 364
276 Egypt 12962 G 364 364
277 Egypt 12963 G 364 364
278 Egypt 12964 A 364 364
279 Egypt 12965 T 364 364
280 Egypt 12966 T 364 364
281 Egypt 12967 A 364 364
282 Egypt 12968 A 364 364
283 Egypt 12969 A 364 364
284 Egypt 12970 C 364 364
285 Egypt 12971 A 364 364
286 Egypt 12972 A 364 364
287 Egypt 12973 C 364 364
288 Egypt 12974 C 364 364
289 Egypt 12975 T 364 364
290 Egypt 12976 A 364 364
291 Egypt 12977 A 364 364
292 Egypt 12978 A 364 364
293 Egypt 12979 T 364 364
294 Egypt 12980 A 364 364
295 Egypt 12981 G 364 364
296 Egypt 12982 A 364 364
297 Egypt 12983 G 364 364
298 Egypt 12984 G 364 364
299 Egypt 12985 T 364 364
300 Egypt 12986 A 364 364
301 Egypt 12987 T 364 364
302 Egypt 12988 G 364 364
303 Egypt 12989 G 364 364
304 Egypt 12990 T 364 364
305 Egypt 12991 A 364 364
306 Egypt 12992 C 364 364
307 Egypt 12993 T 364 364
308 Egypt 12994 T 364 364
309 Egypt 12995 G 364 364
310 Egypt 12996 G 364 364
311 Egypt 12997 T 364 364
312 Egypt 12998 A 364 364
313 Egypt 12999 G 364 364
314 Egypt 13000 T 364 364
315 Egypt 13001 T 364 364
316 Egypt 13002 T 364 364
317 Egypt 13003 A 364 364
318 Egypt 13004 G 364 364
319 Egypt 13005 C 364 364
320 Egypt 13006 T 364 364
321 Egypt 13007 G 364 364
322 Egypt 13008 C 364 364
323 Egypt 13009 C 364 364
324 Egypt 13010 A 364 364
325 Egypt 13011 C 364 364
326 Egypt 13012 A 364 364
327 Egypt 13013 G 364 364
328 Egypt 13014 T 364 364
329 Egypt 13015 A G 364 363 Val4250Val
330 Egypt 13016 C 364 364
331 Egypt 13017 G 364 364
332 Egypt 13018 T 364 364
333 Egypt 13019 C 364 364
334 Egypt 13020 T 364 364
335 Egypt 13021 A 364 364
336 Egypt 13022 C 364 364
337 Egypt 13023 A 364 364
338 Egypt 13024 A 364 364