National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30 3                               3 5    
C   9   1                                    
D   18 2   2 1   2           2                
E   9       1                                
F   12         2                              
G   27   1   1   2                   1   1    
H                                            
I   6               2                 1 1    
K   21                 2           1          
L   45         1         9                    
M   6               1                   1    
N   21                       2                
P   18                   3     2     2        
Q   12             2   1         1 1          
R   18           1                 3          
S   15         1     1       2       2        
T   36 3             11                 4      
V   18         1     1                   2    
W   3                                        
Y   15   1                                   4

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Denmark 12686 A 34733 34733
1 Denmark 12687 A 34733 34733
2 Denmark 12688 T 34733 34733
3 Denmark 12689 A 34733 34733
4 Denmark 12690 A 34733 34733
5 Denmark 12691 T 34733 34733
6 Denmark 12692 G 34733 34733
7 Denmark 12693 A 34733 34733
8 Denmark 12694 G 34733 34733
9 Denmark 12695 C 34733 34733
10 Denmark 12696 T 34733 34733
11 Denmark 12697 T 34733 34733
12 Denmark 12698 A 34733 34733
13 Denmark 12699 G A 34733 34730 Ser4145Asn
14 Denmark 12700 T 34733 34733
15 Denmark 12701 C 34733 34733
16 Denmark 12702 C 34733 34733
17 Denmark 12703 T 34733 34733
18 Denmark 12704 G 34733 34733
19 Denmark 12705 T 34733 34733
20 Denmark 12706 T A 34733 34732 Val4147Val
21 Denmark 12707 G 34733 34733
22 Denmark 12708 C T 34733 34731 Ala4148Val
23 Denmark 12709 A 34733 34733
24 Denmark 12710 C 34733 34733
25 Denmark 12711 T 34733 34733
26 Denmark 12712 A 34733 34733
27 Denmark 12713 C 34733 34733
28 Denmark 12714 G 34733 34733
29 Denmark 12715 A 34733 34733
30 Denmark 12716 C 34733 34733
31 Denmark 12717 A 34733 34733
32 Denmark 12718 G T 34733 34730 Gln4151His
33 Denmark 12719 A 34733 34733
34 Denmark 12720 T 34733 34733
35 Denmark 12721 G 34733 34733
36 Denmark 12722 T 34733 34733
37 Denmark 12723 C T 34733 34732 Ser4153Phe
38 Denmark 12724 T 34733 34733
39 Denmark 12725 T 34733 34733
40 Denmark 12726 G 34733 34733
41 Denmark 12727 T 34733 34733
42 Denmark 12728 G 34733 34733
43 Denmark 12729 C T 34733 34732 Ala4155Val
44 Denmark 12730 T 34733 34733
45 Denmark 12731 G 34733 34733
46 Denmark 12732 C 34733 34733
47 Denmark 12733 C A,T 34757 34740 Ala4156Ala-p.Ala4156Ala
48 Denmark 12734 G 34757 34757
49 Denmark 12735 G 34757 34757
50 Denmark 12736 T 34757 34757
51 Denmark 12737 A G 34757 34756 Thr4158Ala
52 Denmark 12738 C T 34757 34736 Thr4158Ile
53 Denmark 12739 T A 34757 34754 Thr4158Thr
54 Denmark 12740 A 34757 34757
55 Denmark 12741 C T 34757 34753 Thr4159Ile
56 Denmark 12742 A 34757 34757
57 Denmark 12743 C 34757 34755
58 Denmark 12744 A 34757 34757
59 Denmark 12745 A 34757 34756
60 Denmark 12746 A 34757 34757
61 Denmark 12747 C T 34757 34751 Thr4161Ile
62 Denmark 12748 T C 34757 34740 Thr4161Thr
63 Denmark 12749 G A 34757 34756 Ala4162Thr
64 Denmark 12750 C 34757 34757
65 Denmark 12751 T 34757 34757
66 Denmark 12752 T 34757 34757
67 Denmark 12753 G 34757 34757
68 Denmark 12754 C 34757 34757
69 Denmark 12755 A G 34757 34756 Thr4164Ala
70 Denmark 12756 C T 34757 34751 Thr4164Ile
71 Denmark 12757 T 34757 34757
72 Denmark 12758 G A 34757 34756 Asp4165Asn
73 Denmark 12759 A G,C 34757 34729 Asp4165Gly-p.Asp4165Ala
74 Denmark 12760 T 34757 34757
75 Denmark 12761 G 34757 34757
76 Denmark 12762 A G 34757 34756 Asp4166Gly
77 Denmark 12763 C T,A 34757 34747 Asp4166Glu-p.Asp4166Asp
78 Denmark 12764 A 34757 34757
79 Denmark 12765 A 34757 34757
80 Denmark 12766 T 34757 34757
81 Denmark 12767 G 34757 34757
82 Denmark 12768 C 34757 34757
83 Denmark 12769 G T 34757 34750 Ala4168Ala
84 Denmark 12770 T 34757 34757
85 Denmark 12771 T 34757 34757
86 Denmark 12772 A 34757 34757
87 Denmark 12773 G 34757 34757
88 Denmark 12774 C T 34756 34751 Ala4170Val
89 Denmark 12775 T 34756 34756
90 Denmark 12776 T 34756 34756
91 Denmark 12777 A 34756 34756
92 Denmark 12778 C T 34755 34741 Tyr4171Tyr
93 Denmark 12779 T 34755 34755
94 Denmark 12780 A 33902 33899
95 Denmark 12781 C T 33902 33787 Tyr4172Tyr
96 Denmark 12782 A 33902 33899
97 Denmark 12783 A 33902 33899
98 Denmark 12784 C T 33902 33879 Asn4173Asn
99 Denmark 12785 A 33902 33899
100 Denmark 12786 C T 33902 33897 Thr4174Ile
101 Denmark 12787 A 33902 33899
102 Denmark 12788 A 33902 33898
103 Denmark 12789 C T 33902 33874 Thr4175Ile
104 Denmark 12790 A 33902 33899
105 Denmark 12791 A 33902 33898
106 Denmark 12792 A G 33902 33897 Lys4176Arg
107 Denmark 12793 G A 33902 33898 Lys4176Lys
108 Denmark 12794 G 33902 33899
109 Denmark 12795 G A 33902 33895 Gly4177Glu
110 Denmark 12796 A 33902 33900
111 Denmark 12797 G T,A 33902 33892 Gly4178Cys-p.Gly4178Ser
112 Denmark 12798 G T 33902 33899 Gly4178Val
113 Denmark 12799 T 33902 33900
114 Denmark 12800 A 33902 33900
115 Denmark 12801 G 33902 33900
116 Denmark 12802 G A 33902 33897 Arg4179Arg
117 Denmark 12803 T 33902 33900
118 Denmark 12804 T 33902 33900
119 Denmark 12805 T 33902 33900
120 Denmark 12806 G A 33902 33886 Val4181Ile
121 Denmark 12807 T 33902 33902
122 Denmark 12808 A 33902 33902
123 Denmark 12809 C T 33902 33879 Leu4182Phe
124 Denmark 12810 T 33902 33902
125 Denmark 12811 T 33902 33901
126 Denmark 12812 G 33902 33902
127 Denmark 12813 C 33902 33902
128 Denmark 12814 A 33902 33902
129 Denmark 12815 C T 33902 33900 Leu4184Leu
130 Denmark 12816 T 33902 33901
131 Denmark 12817 G T 33902 33901 Leu4184Leu
132 Denmark 12818 T 33902 33902
133 Denmark 12819 T 33902 33902
134 Denmark 12820 A G 33902 33900 Leu4185Leu
135 Denmark 12821 T 33902 33901
136 Denmark 12822 C 33902 33902
137 Denmark 12823 C T,A 33902 33846 Ser4186Ser-p.Ser4186Ser
138 Denmark 12824 G A 33902 33838 Asp4187Asn
139 Denmark 12825 A C 33902 33901 Asp4187Ala
140 Denmark 12826 T 33902 33902
141 Denmark 12827 T 33902 33902
142 Denmark 12828 T 33902 33902
143 Denmark 12829 A 33902 33902
144 Denmark 12830 C A 33902 33901 Gln4189Lys
145 Denmark 12831 A G 33902 33901 Gln4189Arg
146 Denmark 12832 G T,A 33902 33895 Gln4189His-p.Gln4189Gln
147 Denmark 12833 G 33902 33902
148 Denmark 12834 A 33902 33902
149 Denmark 12835 T 33902 33902
150 Denmark 12836 T C 33903 33884 Leu4191Leu
151 Denmark 12837 T 33903 33903
152 Denmark 12838 G A 33903 33871 Leu4191Leu
153 Denmark 12839 A 33903 33903
154 Denmark 12840 A 33903 33903
155 Denmark 12841 A G 33903 33901 Lys4192Lys
156 Denmark 12842 T 33903 33902
157 Denmark 12843 G 33903 33902
158 Denmark 12844 G 33904 33903
159 Denmark 12845 G A 33904 33900 Ala4194Thr
160 Denmark 12846 C T 33904 33901 Ala4194Val
161 Denmark 12847 T 33904 33902
162 Denmark 12848 A 33904 33902
163 Denmark 12849 G 33904 33902
164 Denmark 12850 A G 33904 33901 Arg4195Arg
165 Denmark 12851 T 33904 33902
166 Denmark 12852 T 33904 33902
167 Denmark 12853 C T 33904 33900 Phe4196Phe
168 Denmark 12854 C T 33904 33893 Pro4197Ser
169 Denmark 12855 C T 33904 33898 Pro4197Leu
170 Denmark 12856 T C 33904 33901 Pro4197Pro
171 Denmark 12857 A 33904 33902
172 Denmark 12858 A 33904 33902
173 Denmark 12859 G 33904 33902
174 Denmark 12860 A 33904 33902
175 Denmark 12861 G 33905 33903
176 Denmark 12862 T 33905 33903
177 Denmark 12863 G 33905 33904
178 Denmark 12864 A 33905 33904
179 Denmark 12865 T C 33905 33903 Asp4200Asp
180 Denmark 12866 G 33905 33904
181 Denmark 12867 G 33905 33904
182 Denmark 12868 A 33905 33904
183 Denmark 12869 A G 33905 33899 Thr4202Ala
184 Denmark 12870 C 33905 33903
185 Denmark 12871 T 33905 33904
186 Denmark 12872 G 33905 33904
187 Denmark 12873 G 33905 33904
188 Denmark 12874 T 33905 33904
189 Denmark 12875 A 33905 33904
190 Denmark 12876 C T 33905 33902 Thr4204Ile
191 Denmark 12877 T C 33905 33904 Thr4204Thr
192 Denmark 12878 A G 33905 33904 Ile4205Val
193 Denmark 12879 T C 33905 33904 Ile4205Thr
194 Denmark 12880 C T 33905 33889 Ile4205Ile
195 Denmark 12881 T 33905 33905
196 Denmark 12882 A 33905 33905
197 Denmark 12883 T C 33905 33903 Tyr4206Tyr
198 Denmark 12884 A 33905 33905
199 Denmark 12885 C T 33905 33887 Thr4207Ile
200 Denmark 12886 A G 33905 33903 Thr4207Thr
201 Denmark 12887 G 33905 33905
202 Denmark 12888 A 33905 33905
203 Denmark 12889 A G 33905 33904 Glu4208Glu
204 Denmark 12890 C 33905 33904
205 Denmark 12891 T 33905 33905
206 Denmark 12892 G A 33905 33895 Leu4209Leu
207 Denmark 12893 G 33905 33904
208 Denmark 12894 A 33905 33905
209 Denmark 12895 A 33905 33905
210 Denmark 12896 C 33905 33905
211 Denmark 12897 C T 33905 33902 Pro4211Leu
212 Denmark 12898 A 33905 33905
213 Denmark 12899 C 33905 33905
214 Denmark 12900 C 33905 33905
215 Denmark 12901 T C 33905 33904 Pro4212Pro
216 Denmark 12902 T 33905 33905
217 Denmark 12903 G 33905 33905
218 Denmark 12904 T C 33905 33896 Cys4213Cys
219 Denmark 12905 A G 33905 33904 Arg4214Gly
220 Denmark 12906 G 33905 33905
221 Denmark 12907 G 33905 33904
222 Denmark 12908 T 33905 33905
223 Denmark 12909 T 33905 33905
224 Denmark 12910 T C 33905 33897 Phe4215Phe
225 Denmark 12911 G T 33905 33904 Val4216Phe
226 Denmark 12912 T 33905 33905
227 Denmark 12913 T 33905 33905
228 Denmark 12914 A 33905 33905
229 Denmark 12915 C T 33905 33890 Thr4217Ile
230 Denmark 12916 A 33905 33905
231 Denmark 12917 G 33905 33905
232 Denmark 12918 A 33905 33905
233 Denmark 12919 C 33905 33905
234 Denmark 12920 A 33905 33905
235 Denmark 12921 C T 33905 33900 Thr4219Ile
236 Denmark 12922 A 33905 33905
237 Denmark 12923 C T 33905 33889 Pro4220Ser
238 Denmark 12924 C T 33906 33900 Pro4220Leu
239 Denmark 12925 T 33906 33905
240 Denmark 12926 A 33906 33906
241 Denmark 12927 A 33906 33906
242 Denmark 12928 A 33906 33905
243 Denmark 12929 G 33906 33906
244 Denmark 12930 G 33906 33906
245 Denmark 12931 T 33906 33906
246 Denmark 12932 C 33906 33906
247 Denmark 12933 C 33906 33906
248 Denmark 12934 T 33906 33906
249 Denmark 12935 A 33906 33906
250 Denmark 12936 A 33906 33906
251 Denmark 12937 A 33906 33906
252 Denmark 12938 G 33906 33906
253 Denmark 12939 T 33906 33906
254 Denmark 12940 G 33906 33906
255 Denmark 12941 A 33906 33906
256 Denmark 12942 A 33906 33906
257 Denmark 12943 G 33906 33906
258 Denmark 12944 T 33906 33906
259 Denmark 12945 A G 33906 33889 Tyr4227Cys
260 Denmark 12946 T 33906 33906
261 Denmark 12947 T 33906 33906
262 Denmark 12948 T 33906 33906
263 Denmark 12949 A G 33906 33905 Leu4228Leu
264 Denmark 12950 T 33906 33906
265 Denmark 12951 A 33906 33906
266 Denmark 12952 C T 33906 33897 Tyr4229Tyr
267 Denmark 12953 T 33906 33906
268 Denmark 12954 T 33906 33906
269 Denmark 12955 T 33906 33906
270 Denmark 12956 A 33906 33906
271 Denmark 12957 T 33906 33906
272 Denmark 12958 T C 33906 33903 Ile4231Ile
273 Denmark 12959 A 33906 33906
274 Denmark 12960 A 33906 33906
275 Denmark 12961 A 33906 33906
276 Denmark 12962 G 33906 33906
277 Denmark 12963 G 33906 33906
278 Denmark 12964 A G 33906 33746 Gly4233Gly
279 Denmark 12965 T 33906 33906
280 Denmark 12966 T 33906 33905
281 Denmark 12967 A 33906 33906
282 Denmark 12968 A 33906 33906
283 Denmark 12969 A 33906 33906
284 Denmark 12970 C T 33906 33881 Asn4235Asn
285 Denmark 12971 A 33906 33905
286 Denmark 12972 A 33906 33906
287 Denmark 12973 C 33906 33906
288 Denmark 12974 C T 33906 33905 Leu4237Leu
289 Denmark 12975 T 33906 33906
290 Denmark 12976 A 33906 33906
291 Denmark 12977 A 33906 33906
292 Denmark 12978 A 33906 33906
293 Denmark 12979 T 33906 33906
294 Denmark 12980 A 33906 33906
295 Denmark 12981 G 33906 33906
296 Denmark 12982 A 33906 33906
297 Denmark 12983 G 33906 33906
298 Denmark 12984 G 33906 33906
299 Denmark 12985 T C 33906 33904 Gly4240Gly
300 Denmark 12986 A G 33906 33903 Met4241Val
301 Denmark 12987 T 33906 33906
302 Denmark 12988 G T 33906 31041 Met4241Ile
303 Denmark 12989 G 33906 33906
304 Denmark 12990 T 33906 33906
305 Denmark 12991 A G 33906 33855 Val4242Val
306 Denmark 12992 C 33906 33906
307 Denmark 12993 T 33906 33906
308 Denmark 12994 T 33906 33906
309 Denmark 12995 G 33906 33906
310 Denmark 12996 G 33906 33906
311 Denmark 12997 T 33906 33906
312 Denmark 12998 A 33906 33906
313 Denmark 12999 G T,A 33906 33903 Ser4245Ile-p.Ser4245Asn
314 Denmark 13000 T 33906 33906
315 Denmark 13001 T 33906 33905
316 Denmark 13002 T 33906 33906
317 Denmark 13003 A 33906 33905
318 Denmark 13004 G 33906 33906
319 Denmark 13005 C T 33906 33905 Ala4247Val
320 Denmark 13006 T 33906 33906
321 Denmark 13007 G A 33906 33905 Ala4248Thr
322 Denmark 13008 C 33906 33906
323 Denmark 13009 C 33906 33904
324 Denmark 13010 A 33906 33906
325 Denmark 13011 C T 33906 33901 Thr4249Ile
326 Denmark 13012 A 33906 33906
327 Denmark 13013 G 33906 33906
328 Denmark 13014 T 33906 33906
329 Denmark 13015 A 33906 33906
330 Denmark 13016 C 33906 33906
331 Denmark 13017 G 33906 33906
332 Denmark 13018 T C 33906 33905 Arg4251Arg
333 Denmark 13019 C T 33906 33899 Leu4252Leu
334 Denmark 13020 T 33906 33906
335 Denmark 13021 A 33906 33906
336 Denmark 13022 C 33906 33906
337 Denmark 13023 A 33906 33906
338 Denmark 13024 A 33905 33905