National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                                    
C   9   1                                  
D   18     1 1   1                          
E   9                                      
F   12                                      
G   27                             1        
I   6                                      
K   21                                      
L   45                 1                    
M   6             2                        
N   21                                      
P   18                               1      
Q   12                                      
R   18                                      
S   15                                      
T   36             1                        
V   18                                      
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Czech_Republic 12686 A 602 602
1 Czech_Republic 12687 A 602 602
2 Czech_Republic 12688 T 602 602
3 Czech_Republic 12689 A 602 602
4 Czech_Republic 12690 A 602 602
5 Czech_Republic 12691 T 602 602
6 Czech_Republic 12692 G 602 602
7 Czech_Republic 12693 A 602 602
8 Czech_Republic 12694 G 602 602
9 Czech_Republic 12695 C 602 602
10 Czech_Republic 12696 T 602 602
11 Czech_Republic 12697 T 602 602
12 Czech_Republic 12698 A 602 602
13 Czech_Republic 12699 G 602 602
14 Czech_Republic 12700 T 602 602
15 Czech_Republic 12701 C 602 602
16 Czech_Republic 12702 C 602 602
17 Czech_Republic 12703 T 602 602
18 Czech_Republic 12704 G 602 602
19 Czech_Republic 12705 T 602 602
20 Czech_Republic 12706 T 602 602
21 Czech_Republic 12707 G 602 602
22 Czech_Republic 12708 C 602 602
23 Czech_Republic 12709 A 602 602
24 Czech_Republic 12710 C 602 602
25 Czech_Republic 12711 T 602 602
26 Czech_Republic 12712 A 602 602
27 Czech_Republic 12713 C 602 602
28 Czech_Republic 12714 G 602 602
29 Czech_Republic 12715 A 602 602
30 Czech_Republic 12716 C 602 602
31 Czech_Republic 12717 A 602 602
32 Czech_Republic 12718 G 602 602
33 Czech_Republic 12719 A 602 602
34 Czech_Republic 12720 T 602 602
35 Czech_Republic 12721 G T 602 601 Met4152Ile
36 Czech_Republic 12722 T 602 602
37 Czech_Republic 12723 C 602 602
38 Czech_Republic 12724 T 602 602
39 Czech_Republic 12725 T 602 602
40 Czech_Republic 12726 G 602 602
41 Czech_Republic 12727 T 602 602
42 Czech_Republic 12728 G 602 602
43 Czech_Republic 12729 C 602 602
44 Czech_Republic 12730 T 602 602
45 Czech_Republic 12731 G 602 602
46 Czech_Republic 12732 C 602 602
47 Czech_Republic 12733 C 602 602
48 Czech_Republic 12734 G A 602 600 Gly4157Ser
49 Czech_Republic 12735 G 602 602
50 Czech_Republic 12736 T 602 602
51 Czech_Republic 12737 A 602 602
52 Czech_Republic 12738 C 602 602
53 Czech_Republic 12739 T 602 602
54 Czech_Republic 12740 A 602 602
55 Czech_Republic 12741 C 602 602
56 Czech_Republic 12742 A 602 602
57 Czech_Republic 12743 C 602 602
58 Czech_Republic 12744 A 602 602
59 Czech_Republic 12745 A 602 602
60 Czech_Republic 12746 A 602 602
61 Czech_Republic 12747 C 602 602
62 Czech_Republic 12748 T 602 602
63 Czech_Republic 12749 G 602 602
64 Czech_Republic 12750 C 602 602
65 Czech_Republic 12751 T 602 602
66 Czech_Republic 12752 T 602 602
67 Czech_Republic 12753 G 602 602
68 Czech_Republic 12754 C T 602 601 Cys4163Cys
69 Czech_Republic 12755 A 602 602
70 Czech_Republic 12756 C 602 602
71 Czech_Republic 12757 T 602 602
72 Czech_Republic 12758 G 602 602
73 Czech_Republic 12759 A 602 602
74 Czech_Republic 12760 T 602 602
75 Czech_Republic 12761 G 602 602
76 Czech_Republic 12762 A 602 602
77 Czech_Republic 12763 C 602 602
78 Czech_Republic 12764 A 602 602
79 Czech_Republic 12765 A 602 602
80 Czech_Republic 12766 T 602 602
81 Czech_Republic 12767 G 602 602
82 Czech_Republic 12768 C 602 602
83 Czech_Republic 12769 G T 602 600 Ala4168Ala
84 Czech_Republic 12770 T 602 602
85 Czech_Republic 12771 T 602 602
86 Czech_Republic 12772 A 602 602
87 Czech_Republic 12773 G 602 602
88 Czech_Republic 12774 C 602 602
89 Czech_Republic 12775 T 602 602
90 Czech_Republic 12776 T 602 602
91 Czech_Republic 12777 A 602 602
92 Czech_Republic 12778 C 602 602
93 Czech_Republic 12779 T 602 602
94 Czech_Republic 12780 A 602 602
95 Czech_Republic 12781 C T 602 601 Tyr4172Tyr
96 Czech_Republic 12782 A 602 602
97 Czech_Republic 12783 A 602 602
98 Czech_Republic 12784 C 602 602
99 Czech_Republic 12785 A 602 602
100 Czech_Republic 12786 C 602 602
101 Czech_Republic 12787 A 602 602
102 Czech_Republic 12788 A 602 602
103 Czech_Republic 12789 C T 602 601 Thr4175Ile
104 Czech_Republic 12790 A 602 602
105 Czech_Republic 12791 A 602 602
106 Czech_Republic 12792 A 602 602
107 Czech_Republic 12793 G 602 602
108 Czech_Republic 12794 G 602 602
109 Czech_Republic 12795 G 602 602
110 Czech_Republic 12796 A 602 602
111 Czech_Republic 12797 G 602 602
112 Czech_Republic 12798 G 602 602
113 Czech_Republic 12799 T 602 602
114 Czech_Republic 12800 A 602 602
115 Czech_Republic 12801 G 602 602
116 Czech_Republic 12802 G 602 602
117 Czech_Republic 12803 T 602 602
118 Czech_Republic 12804 T 602 602
119 Czech_Republic 12805 T 602 602
120 Czech_Republic 12806 G 602 602
121 Czech_Republic 12807 T 602 602
122 Czech_Republic 12808 A 602 602
123 Czech_Republic 12809 C 602 602
124 Czech_Republic 12810 T 602 602
125 Czech_Republic 12811 T 602 602
126 Czech_Republic 12812 G 602 602
127 Czech_Republic 12813 C 602 602
128 Czech_Republic 12814 A 602 602
129 Czech_Republic 12815 C 602 602
130 Czech_Republic 12816 T 602 602
131 Czech_Republic 12817 G 602 602
132 Czech_Republic 12818 T 602 602
133 Czech_Republic 12819 T 602 602
134 Czech_Republic 12820 A G 602 601 Leu4185Leu
135 Czech_Republic 12821 T 602 602
136 Czech_Republic 12822 C 602 602
137 Czech_Republic 12823 C 602 602
138 Czech_Republic 12824 G 602 602
139 Czech_Republic 12825 A 602 602
140 Czech_Republic 12826 T 602 602
141 Czech_Republic 12827 T 602 602
142 Czech_Republic 12828 T 602 602
143 Czech_Republic 12829 A 602 602
144 Czech_Republic 12830 C 602 602
145 Czech_Republic 12831 A 602 602
146 Czech_Republic 12832 G 602 602
147 Czech_Republic 12833 G 602 602
148 Czech_Republic 12834 A G 602 601 Asp4190Gly
149 Czech_Republic 12835 T C 602 601 Asp4190Asp
150 Czech_Republic 12836 T 602 602
151 Czech_Republic 12837 T 602 602
152 Czech_Republic 12838 G 602 602
153 Czech_Republic 12839 A 602 602
154 Czech_Republic 12840 A 602 602
155 Czech_Republic 12841 A 602 602
156 Czech_Republic 12842 T 602 602
157 Czech_Republic 12843 G 602 602
158 Czech_Republic 12844 G 602 602
159 Czech_Republic 12845 G 602 602
160 Czech_Republic 12846 C 602 602
161 Czech_Republic 12847 T 602 602
162 Czech_Republic 12848 A 602 602
163 Czech_Republic 12849 G 602 601
164 Czech_Republic 12850 A 602 602
165 Czech_Republic 12851 T 602 602
166 Czech_Republic 12852 T 602 602
167 Czech_Republic 12853 C 602 601
168 Czech_Republic 12854 C 602 602
169 Czech_Republic 12855 C 602 602
170 Czech_Republic 12856 T 602 602
171 Czech_Republic 12857 A 602 602
172 Czech_Republic 12858 A 602 602
173 Czech_Republic 12859 G 602 602
174 Czech_Republic 12860 A 602 602
175 Czech_Republic 12861 G 602 602
176 Czech_Republic 12862 T 602 602
177 Czech_Republic 12863 G 602 602
178 Czech_Republic 12864 A 602 602
179 Czech_Republic 12865 T 602 602
180 Czech_Republic 12866 G 602 602
181 Czech_Republic 12867 G 602 602
182 Czech_Republic 12868 A 602 602
183 Czech_Republic 12869 A 602 602
184 Czech_Republic 12870 C 602 602
185 Czech_Republic 12871 T 602 602
186 Czech_Republic 12872 G 602 602
187 Czech_Republic 12873 G 602 602
188 Czech_Republic 12874 T 602 602
189 Czech_Republic 12875 A 602 602
190 Czech_Republic 12876 C 602 602
191 Czech_Republic 12877 T 602 602
192 Czech_Republic 12878 A 602 602
193 Czech_Republic 12879 T 602 602
194 Czech_Republic 12880 C 602 602
195 Czech_Republic 12881 T 602 602
196 Czech_Republic 12882 A 602 602
197 Czech_Republic 12883 T 602 602
198 Czech_Republic 12884 A 602 602
199 Czech_Republic 12885 C 602 602
200 Czech_Republic 12886 A 602 602
201 Czech_Republic 12887 G 602 602
202 Czech_Republic 12888 A 602 602
203 Czech_Republic 12889 A 602 602
204 Czech_Republic 12890 C 602 602
205 Czech_Republic 12891 T 602 602
206 Czech_Republic 12892 G 602 602
207 Czech_Republic 12893 G 602 602
208 Czech_Republic 12894 A 602 602
209 Czech_Republic 12895 A 602 602
210 Czech_Republic 12896 C 602 602
211 Czech_Republic 12897 C 602 602
212 Czech_Republic 12898 A 602 602
213 Czech_Republic 12899 C 602 602
214 Czech_Republic 12900 C 602 602
215 Czech_Republic 12901 T 602 602
216 Czech_Republic 12902 T 602 602
217 Czech_Republic 12903 G 602 602
218 Czech_Republic 12904 T 602 602
219 Czech_Republic 12905 A 602 602
220 Czech_Republic 12906 G 602 602
221 Czech_Republic 12907 G 602 602
222 Czech_Republic 12908 T 602 602
223 Czech_Republic 12909 T 602 602
224 Czech_Republic 12910 T 602 602
225 Czech_Republic 12911 G 602 602
226 Czech_Republic 12912 T 602 602
227 Czech_Republic 12913 T 602 602
228 Czech_Republic 12914 A 602 602
229 Czech_Republic 12915 C 602 602
230 Czech_Republic 12916 A 602 602
231 Czech_Republic 12917 G 602 602
232 Czech_Republic 12918 A 602 602
233 Czech_Republic 12919 C A 602 601 Asp4218Glu
234 Czech_Republic 12920 A 602 602
235 Czech_Republic 12921 C 602 602
236 Czech_Republic 12922 A 602 602
237 Czech_Republic 12923 C A 602 601 Pro4220Thr
238 Czech_Republic 12924 C 602 602
239 Czech_Republic 12925 T 602 602
240 Czech_Republic 12926 A 602 602
241 Czech_Republic 12927 A 602 602
242 Czech_Republic 12928 A 602 602
243 Czech_Republic 12929 G 602 602
244 Czech_Republic 12930 G 602 602
245 Czech_Republic 12931 T 602 602
246 Czech_Republic 12932 C 602 602
247 Czech_Republic 12933 C 602 602
248 Czech_Republic 12934 T 602 602
249 Czech_Republic 12935 A 602 602
250 Czech_Republic 12936 A 602 602
251 Czech_Republic 12937 A 602 602
252 Czech_Republic 12938 G 602 602
253 Czech_Republic 12939 T 602 602
254 Czech_Republic 12940 G 602 602
255 Czech_Republic 12941 A 602 602
256 Czech_Republic 12942 A 602 602
257 Czech_Republic 12943 G 602 602
258 Czech_Republic 12944 T 602 602
259 Czech_Republic 12945 A 602 602
260 Czech_Republic 12946 T 602 602
261 Czech_Republic 12947 T 602 602
262 Czech_Republic 12948 T 602 602
263 Czech_Republic 12949 A 602 602
264 Czech_Republic 12950 T 602 602
265 Czech_Republic 12951 A 602 602
266 Czech_Republic 12952 C 602 602
267 Czech_Republic 12953 T 602 602
268 Czech_Republic 12954 T 602 602
269 Czech_Republic 12955 T 602 602
270 Czech_Republic 12956 A 602 602
271 Czech_Republic 12957 T 602 602
272 Czech_Republic 12958 T 602 602
273 Czech_Republic 12959 A 602 602
274 Czech_Republic 12960 A 602 602
275 Czech_Republic 12961 A 602 602
276 Czech_Republic 12962 G 602 602
277 Czech_Republic 12963 G 602 602
278 Czech_Republic 12964 A 602 602
279 Czech_Republic 12965 T 602 602
280 Czech_Republic 12966 T 602 602
281 Czech_Republic 12967 A 602 602
282 Czech_Republic 12968 A 602 602
283 Czech_Republic 12969 A 602 602
284 Czech_Republic 12970 C 602 602
285 Czech_Republic 12971 A 602 602
286 Czech_Republic 12972 A 602 602
287 Czech_Republic 12973 C 602 602
288 Czech_Republic 12974 C 602 602
289 Czech_Republic 12975 T 602 602
290 Czech_Republic 12976 A 602 602
291 Czech_Republic 12977 A 602 602
292 Czech_Republic 12978 A 602 602
293 Czech_Republic 12979 T 602 602
294 Czech_Republic 12980 A 602 602
295 Czech_Republic 12981 G 602 602
296 Czech_Republic 12982 A 602 602
297 Czech_Republic 12983 G 602 602
298 Czech_Republic 12984 G 602 602
299 Czech_Republic 12985 T 602 602
300 Czech_Republic 12986 A 602 602
301 Czech_Republic 12987 T 602 602
302 Czech_Republic 12988 G T 602 439 Met4241Ile
303 Czech_Republic 12989 G 602 602
304 Czech_Republic 12990 T 602 602
305 Czech_Republic 12991 A 602 602
306 Czech_Republic 12992 C 602 602
307 Czech_Republic 12993 T 602 602
308 Czech_Republic 12994 T 602 602
309 Czech_Republic 12995 G 602 602
310 Czech_Republic 12996 G 602 602
311 Czech_Republic 12997 T 602 602
312 Czech_Republic 12998 A 602 602
313 Czech_Republic 12999 G 602 602
314 Czech_Republic 13000 T 602 602
315 Czech_Republic 13001 T 602 602
316 Czech_Republic 13002 T 602 602
317 Czech_Republic 13003 A 602 602
318 Czech_Republic 13004 G 602 602
319 Czech_Republic 13005 C 602 602
320 Czech_Republic 13006 T 602 602
321 Czech_Republic 13007 G 602 602
322 Czech_Republic 13008 C 602 602
323 Czech_Republic 13009 C 602 602
324 Czech_Republic 13010 A 602 602
325 Czech_Republic 13011 C 602 602
326 Czech_Republic 13012 A 602 602
327 Czech_Republic 13013 G 602 602
328 Czech_Republic 13014 T 602 602
329 Czech_Republic 13015 A 602 602
330 Czech_Republic 13016 C 602 602
331 Czech_Republic 13017 G 602 602
332 Czech_Republic 13018 T 602 602
333 Czech_Republic 13019 C 602 602
334 Czech_Republic 13020 T 602 602
335 Czech_Republic 13021 A 602 602
336 Czech_Republic 13022 C 602 602
337 Czech_Republic 13023 A 602 602
338 Czech_Republic 13024 A 602 602