National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cyprus 12686 A 8 8
1 Cyprus 12687 A 8 8
2 Cyprus 12688 T 8 8
3 Cyprus 12689 A 8 8
4 Cyprus 12690 A 8 8
5 Cyprus 12691 T 8 8
6 Cyprus 12692 G 8 8
7 Cyprus 12693 A 8 8
8 Cyprus 12694 G 8 8
9 Cyprus 12695 C 8 8
10 Cyprus 12696 T 8 8
11 Cyprus 12697 T 8 8
12 Cyprus 12698 A 8 8
13 Cyprus 12699 G 8 8
14 Cyprus 12700 T 8 8
15 Cyprus 12701 C 8 8
16 Cyprus 12702 C 8 8
17 Cyprus 12703 T 8 8
18 Cyprus 12704 G 8 8
19 Cyprus 12705 T 8 8
20 Cyprus 12706 T 8 8
21 Cyprus 12707 G 8 8
22 Cyprus 12708 C 8 8
23 Cyprus 12709 A 8 8
24 Cyprus 12710 C 8 8
25 Cyprus 12711 T 8 8
26 Cyprus 12712 A 8 8
27 Cyprus 12713 C 8 8
28 Cyprus 12714 G 8 8
29 Cyprus 12715 A 8 8
30 Cyprus 12716 C 8 8
31 Cyprus 12717 A 8 8
32 Cyprus 12718 G 8 8
33 Cyprus 12719 A 8 8
34 Cyprus 12720 T 8 8
35 Cyprus 12721 G 8 8
36 Cyprus 12722 T 8 8
37 Cyprus 12723 C 8 8
38 Cyprus 12724 T 8 8
39 Cyprus 12725 T 8 8
40 Cyprus 12726 G 8 8
41 Cyprus 12727 T 8 8
42 Cyprus 12728 G 8 8
43 Cyprus 12729 C 8 8
44 Cyprus 12730 T 8 8
45 Cyprus 12731 G 8 8
46 Cyprus 12732 C 8 8
47 Cyprus 12733 C 8 8
48 Cyprus 12734 G 8 8
49 Cyprus 12735 G 8 8
50 Cyprus 12736 T 8 8
51 Cyprus 12737 A 8 8
52 Cyprus 12738 C 8 8
53 Cyprus 12739 T 8 8
54 Cyprus 12740 A 8 8
55 Cyprus 12741 C 8 8
56 Cyprus 12742 A 8 8
57 Cyprus 12743 C 8 8
58 Cyprus 12744 A 8 8
59 Cyprus 12745 A 8 8
60 Cyprus 12746 A 8 8
61 Cyprus 12747 C 8 8
62 Cyprus 12748 T 8 8
63 Cyprus 12749 G 8 8
64 Cyprus 12750 C 8 8
65 Cyprus 12751 T 8 8
66 Cyprus 12752 T 8 8
67 Cyprus 12753 G 8 8
68 Cyprus 12754 C 8 8
69 Cyprus 12755 A 8 8
70 Cyprus 12756 C 8 8
71 Cyprus 12757 T 8 8
72 Cyprus 12758 G 8 8
73 Cyprus 12759 A 8 8
74 Cyprus 12760 T 8 8
75 Cyprus 12761 G 8 8
76 Cyprus 12762 A 8 8
77 Cyprus 12763 C 8 8
78 Cyprus 12764 A 8 8
79 Cyprus 12765 A 8 8
80 Cyprus 12766 T 8 8
81 Cyprus 12767 G 8 8
82 Cyprus 12768 C 8 8
83 Cyprus 12769 G 8 8
84 Cyprus 12770 T 8 8
85 Cyprus 12771 T 8 8
86 Cyprus 12772 A 8 8
87 Cyprus 12773 G 8 8
88 Cyprus 12774 C 8 8
89 Cyprus 12775 T 8 8
90 Cyprus 12776 T 8 8
91 Cyprus 12777 A 8 8
92 Cyprus 12778 C 8 8
93 Cyprus 12779 T 8 8
94 Cyprus 12780 A 8 8
95 Cyprus 12781 C 8 8
96 Cyprus 12782 A 8 8
97 Cyprus 12783 A 8 8
98 Cyprus 12784 C 8 8
99 Cyprus 12785 A 8 8
100 Cyprus 12786 C 8 8
101 Cyprus 12787 A 8 8
102 Cyprus 12788 A 8 8
103 Cyprus 12789 C 8 8
104 Cyprus 12790 A 8 8
105 Cyprus 12791 A 8 8
106 Cyprus 12792 A 8 8
107 Cyprus 12793 G 8 8
108 Cyprus 12794 G 8 8
109 Cyprus 12795 G 8 8
110 Cyprus 12796 A 8 8
111 Cyprus 12797 G 8 8
112 Cyprus 12798 G 8 8
113 Cyprus 12799 T 8 8
114 Cyprus 12800 A 8 8
115 Cyprus 12801 G 8 8
116 Cyprus 12802 G 8 8
117 Cyprus 12803 T 8 8
118 Cyprus 12804 T 8 8
119 Cyprus 12805 T 8 8
120 Cyprus 12806 G 8 8
121 Cyprus 12807 T 8 8
122 Cyprus 12808 A 8 8
123 Cyprus 12809 C 8 8
124 Cyprus 12810 T 8 8
125 Cyprus 12811 T 8 8
126 Cyprus 12812 G 8 8
127 Cyprus 12813 C 8 8
128 Cyprus 12814 A 8 8
129 Cyprus 12815 C 8 8
130 Cyprus 12816 T 8 8
131 Cyprus 12817 G 8 8
132 Cyprus 12818 T 8 8
133 Cyprus 12819 T 8 8
134 Cyprus 12820 A 8 8
135 Cyprus 12821 T 8 8
136 Cyprus 12822 C 8 8
137 Cyprus 12823 C 8 8
138 Cyprus 12824 G 8 8
139 Cyprus 12825 A 8 8
140 Cyprus 12826 T 8 8
141 Cyprus 12827 T 8 8
142 Cyprus 12828 T 8 8
143 Cyprus 12829 A 8 8
144 Cyprus 12830 C 8 8
145 Cyprus 12831 A 8 8
146 Cyprus 12832 G 8 8
147 Cyprus 12833 G 8 8
148 Cyprus 12834 A 8 8
149 Cyprus 12835 T 8 8
150 Cyprus 12836 T 8 8
151 Cyprus 12837 T 8 8
152 Cyprus 12838 G 8 8
153 Cyprus 12839 A 8 8
154 Cyprus 12840 A 8 8
155 Cyprus 12841 A 8 8
156 Cyprus 12842 T 8 8
157 Cyprus 12843 G 8 8
158 Cyprus 12844 G 8 8
159 Cyprus 12845 G 8 8
160 Cyprus 12846 C 8 8
161 Cyprus 12847 T 8 8
162 Cyprus 12848 A 8 8
163 Cyprus 12849 G 8 8
164 Cyprus 12850 A 8 8
165 Cyprus 12851 T 8 8
166 Cyprus 12852 T 8 8
167 Cyprus 12853 C 8 8
168 Cyprus 12854 C 8 8
169 Cyprus 12855 C 8 8
170 Cyprus 12856 T 8 8
171 Cyprus 12857 A 8 8
172 Cyprus 12858 A 8 8
173 Cyprus 12859 G 8 8
174 Cyprus 12860 A 8 8
175 Cyprus 12861 G 8 8
176 Cyprus 12862 T 8 8
177 Cyprus 12863 G 8 8
178 Cyprus 12864 A 8 8
179 Cyprus 12865 T 8 8
180 Cyprus 12866 G 8 8
181 Cyprus 12867 G 8 8
182 Cyprus 12868 A 8 8
183 Cyprus 12869 A 8 8
184 Cyprus 12870 C 8 8
185 Cyprus 12871 T 8 8
186 Cyprus 12872 G 8 8
187 Cyprus 12873 G 8 8
188 Cyprus 12874 T 8 8
189 Cyprus 12875 A 8 8
190 Cyprus 12876 C 8 8
191 Cyprus 12877 T 8 8
192 Cyprus 12878 A 8 8
193 Cyprus 12879 T 8 8
194 Cyprus 12880 C 8 8
195 Cyprus 12881 T 8 8
196 Cyprus 12882 A 8 8
197 Cyprus 12883 T 8 8
198 Cyprus 12884 A 8 8
199 Cyprus 12885 C 8 8
200 Cyprus 12886 A 8 8
201 Cyprus 12887 G 8 8
202 Cyprus 12888 A 8 8
203 Cyprus 12889 A 8 8
204 Cyprus 12890 C 8 8
205 Cyprus 12891 T 8 8
206 Cyprus 12892 G 8 8
207 Cyprus 12893 G 8 8
208 Cyprus 12894 A 8 8
209 Cyprus 12895 A 8 8
210 Cyprus 12896 C 8 8
211 Cyprus 12897 C 8 8
212 Cyprus 12898 A 8 8
213 Cyprus 12899 C 8 8
214 Cyprus 12900 C 8 8
215 Cyprus 12901 T 8 8
216 Cyprus 12902 T 8 8
217 Cyprus 12903 G 8 8
218 Cyprus 12904 T 8 8
219 Cyprus 12905 A 8 8
220 Cyprus 12906 G 8 8
221 Cyprus 12907 G 8 8
222 Cyprus 12908 T 8 8
223 Cyprus 12909 T 8 8
224 Cyprus 12910 T 8 8
225 Cyprus 12911 G 8 8
226 Cyprus 12912 T 8 8
227 Cyprus 12913 T 8 8
228 Cyprus 12914 A 8 8
229 Cyprus 12915 C 8 8
230 Cyprus 12916 A 8 8
231 Cyprus 12917 G 8 8
232 Cyprus 12918 A 8 8
233 Cyprus 12919 C 8 8
234 Cyprus 12920 A 8 8
235 Cyprus 12921 C 8 8
236 Cyprus 12922 A 8 8
237 Cyprus 12923 C 8 8
238 Cyprus 12924 C 8 8
239 Cyprus 12925 T 8 8
240 Cyprus 12926 A 8 8
241 Cyprus 12927 A 8 8
242 Cyprus 12928 A 8 8
243 Cyprus 12929 G 8 8
244 Cyprus 12930 G 8 8
245 Cyprus 12931 T 8 8
246 Cyprus 12932 C 8 8
247 Cyprus 12933 C 8 8
248 Cyprus 12934 T 8 8
249 Cyprus 12935 A 8 8
250 Cyprus 12936 A 8 8
251 Cyprus 12937 A 8 8
252 Cyprus 12938 G 8 8
253 Cyprus 12939 T 8 8
254 Cyprus 12940 G 8 8
255 Cyprus 12941 A 8 8
256 Cyprus 12942 A 8 8
257 Cyprus 12943 G 8 8
258 Cyprus 12944 T 8 8
259 Cyprus 12945 A 8 8
260 Cyprus 12946 T 8 8
261 Cyprus 12947 T 8 8
262 Cyprus 12948 T 8 8
263 Cyprus 12949 A 8 8
264 Cyprus 12950 T 8 8
265 Cyprus 12951 A 8 8
266 Cyprus 12952 C 8 8
267 Cyprus 12953 T 8 8
268 Cyprus 12954 T 8 8
269 Cyprus 12955 T 8 8
270 Cyprus 12956 A 8 8
271 Cyprus 12957 T 8 8
272 Cyprus 12958 T 8 8
273 Cyprus 12959 A 8 8
274 Cyprus 12960 A 8 8
275 Cyprus 12961 A 8 8
276 Cyprus 12962 G 8 8
277 Cyprus 12963 G 8 8
278 Cyprus 12964 A 8 8
279 Cyprus 12965 T 8 8
280 Cyprus 12966 T 8 8
281 Cyprus 12967 A 8 8
282 Cyprus 12968 A 8 8
283 Cyprus 12969 A 8 8
284 Cyprus 12970 C 8 8
285 Cyprus 12971 A 8 8
286 Cyprus 12972 A 8 8
287 Cyprus 12973 C 8 8
288 Cyprus 12974 C 8 8
289 Cyprus 12975 T 8 8
290 Cyprus 12976 A 8 8
291 Cyprus 12977 A 8 8
292 Cyprus 12978 A 8 8
293 Cyprus 12979 T 8 8
294 Cyprus 12980 A 8 8
295 Cyprus 12981 G 8 8
296 Cyprus 12982 A 8 8
297 Cyprus 12983 G 8 8
298 Cyprus 12984 G 8 8
299 Cyprus 12985 T 8 8
300 Cyprus 12986 A 8 8
301 Cyprus 12987 T 8 8
302 Cyprus 12988 G 8 8
303 Cyprus 12989 G 8 8
304 Cyprus 12990 T 8 8
305 Cyprus 12991 A 8 8
306 Cyprus 12992 C 8 8
307 Cyprus 12993 T 8 8
308 Cyprus 12994 T 8 8
309 Cyprus 12995 G 8 8
310 Cyprus 12996 G 8 8
311 Cyprus 12997 T 8 8
312 Cyprus 12998 A 8 8
313 Cyprus 12999 G 8 8
314 Cyprus 13000 T 8 8
315 Cyprus 13001 T 8 8
316 Cyprus 13002 T 8 8
317 Cyprus 13003 A 8 8
318 Cyprus 13004 G 8 8
319 Cyprus 13005 C 8 8
320 Cyprus 13006 T 8 8
321 Cyprus 13007 G 8 8
322 Cyprus 13008 C 8 8
323 Cyprus 13009 C 8 8
324 Cyprus 13010 A 8 8
325 Cyprus 13011 C 8 8
326 Cyprus 13012 A 8 8
327 Cyprus 13013 G 8 8
328 Cyprus 13014 T 8 8
329 Cyprus 13015 A 8 8
330 Cyprus 13016 C 8 8
331 Cyprus 13017 G 8 8
332 Cyprus 13018 T 8 8
333 Cyprus 13019 C 8 8
334 Cyprus 13020 T 8 8
335 Cyprus 13021 A 8 8
336 Cyprus 13022 C 8 8
337 Cyprus 13023 A 8 8
338 Cyprus 13024 A 8 8