National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cuba 12686 A 2 2
1 Cuba 12687 A 2 2
2 Cuba 12688 T 2 2
3 Cuba 12689 A 2 2
4 Cuba 12690 A 2 2
5 Cuba 12691 T 2 2
6 Cuba 12692 G 2 2
7 Cuba 12693 A 2 2
8 Cuba 12694 G 2 2
9 Cuba 12695 C 2 2
10 Cuba 12696 T 2 2
11 Cuba 12697 T 2 2
12 Cuba 12698 A 2 2
13 Cuba 12699 G 2 2
14 Cuba 12700 T 2 2
15 Cuba 12701 C 2 2
16 Cuba 12702 C 2 2
17 Cuba 12703 T 2 2
18 Cuba 12704 G 2 2
19 Cuba 12705 T 2 2
20 Cuba 12706 T 2 2
21 Cuba 12707 G 2 2
22 Cuba 12708 C 2 2
23 Cuba 12709 A 2 2
24 Cuba 12710 C 2 2
25 Cuba 12711 T 2 2
26 Cuba 12712 A 2 2
27 Cuba 12713 C 2 2
28 Cuba 12714 G 2 2
29 Cuba 12715 A 2 2
30 Cuba 12716 C 2 2
31 Cuba 12717 A 2 2
32 Cuba 12718 G 2 2
33 Cuba 12719 A 2 2
34 Cuba 12720 T 2 2
35 Cuba 12721 G 2 2
36 Cuba 12722 T 2 2
37 Cuba 12723 C 2 2
38 Cuba 12724 T 2 2
39 Cuba 12725 T 2 2
40 Cuba 12726 G 2 2
41 Cuba 12727 T 2 2
42 Cuba 12728 G 2 2
43 Cuba 12729 C 2 2
44 Cuba 12730 T 2 2
45 Cuba 12731 G 2 2
46 Cuba 12732 C 2 2
47 Cuba 12733 C 2 2
48 Cuba 12734 G 2 2
49 Cuba 12735 G 2 2
50 Cuba 12736 T 2 2
51 Cuba 12737 A 2 2
52 Cuba 12738 C 2 2
53 Cuba 12739 T 2 2
54 Cuba 12740 A 2 2
55 Cuba 12741 C 2 2
56 Cuba 12742 A 2 2
57 Cuba 12743 C 2 2
58 Cuba 12744 A 2 2
59 Cuba 12745 A 2 2
60 Cuba 12746 A 2 2
61 Cuba 12747 C 2 2
62 Cuba 12748 T 2 2
63 Cuba 12749 G 2 2
64 Cuba 12750 C 2 2
65 Cuba 12751 T 2 2
66 Cuba 12752 T 2 2
67 Cuba 12753 G 2 2
68 Cuba 12754 C 2 2
69 Cuba 12755 A 2 2
70 Cuba 12756 C 2 2
71 Cuba 12757 T 2 2
72 Cuba 12758 G 2 2
73 Cuba 12759 A 2 2
74 Cuba 12760 T 2 2
75 Cuba 12761 G 2 2
76 Cuba 12762 A 2 2
77 Cuba 12763 C 2 2
78 Cuba 12764 A 2 2
79 Cuba 12765 A 2 2
80 Cuba 12766 T 2 2
81 Cuba 12767 G 2 2
82 Cuba 12768 C 2 2
83 Cuba 12769 G 2 2
84 Cuba 12770 T 2 2
85 Cuba 12771 T 2 2
86 Cuba 12772 A 2 2
87 Cuba 12773 G 2 2
88 Cuba 12774 C 2 2
89 Cuba 12775 T 2 2
90 Cuba 12776 T 2 2
91 Cuba 12777 A 2 2
92 Cuba 12778 C 2 2
93 Cuba 12779 T 2 2
94 Cuba 12780 A 2 2
95 Cuba 12781 C 2 2
96 Cuba 12782 A 2 2
97 Cuba 12783 A 2 2
98 Cuba 12784 C 2 2
99 Cuba 12785 A 2 2
100 Cuba 12786 C 2 2
101 Cuba 12787 A 2 2
102 Cuba 12788 A 2 2
103 Cuba 12789 C 2 2
104 Cuba 12790 A 2 2
105 Cuba 12791 A 2 2
106 Cuba 12792 A 2 2
107 Cuba 12793 G 2 2
108 Cuba 12794 G 2 2
109 Cuba 12795 G 2 2
110 Cuba 12796 A 2 2
111 Cuba 12797 G 2 2
112 Cuba 12798 G 2 2
113 Cuba 12799 T 2 2
114 Cuba 12800 A 2 2
115 Cuba 12801 G 2 2
116 Cuba 12802 G 2 2
117 Cuba 12803 T 2 2
118 Cuba 12804 T 2 2
119 Cuba 12805 T 2 2
120 Cuba 12806 G 2 2
121 Cuba 12807 T 2 2
122 Cuba 12808 A 2 2
123 Cuba 12809 C 2 2
124 Cuba 12810 T 2 2
125 Cuba 12811 T 2 2
126 Cuba 12812 G 2 2
127 Cuba 12813 C 2 2
128 Cuba 12814 A 2 2
129 Cuba 12815 C 2 2
130 Cuba 12816 T 2 2
131 Cuba 12817 G 2 2
132 Cuba 12818 T 2 2
133 Cuba 12819 T 2 2
134 Cuba 12820 A 2 2
135 Cuba 12821 T 2 2
136 Cuba 12822 C 2 2
137 Cuba 12823 C 2 2
138 Cuba 12824 G 2 2
139 Cuba 12825 A 2 2
140 Cuba 12826 T 2 2
141 Cuba 12827 T 2 2
142 Cuba 12828 T 2 2
143 Cuba 12829 A 2 2
144 Cuba 12830 C 2 2
145 Cuba 12831 A 2 2
146 Cuba 12832 G 2 2
147 Cuba 12833 G 2 2
148 Cuba 12834 A 2 2
149 Cuba 12835 T 2 2
150 Cuba 12836 T 2 2
151 Cuba 12837 T 2 2
152 Cuba 12838 G 2 2
153 Cuba 12839 A 2 2
154 Cuba 12840 A 2 2
155 Cuba 12841 A 2 2
156 Cuba 12842 T 2 2
157 Cuba 12843 G 2 2
158 Cuba 12844 G 2 2
159 Cuba 12845 G 2 2
160 Cuba 12846 C 2 2
161 Cuba 12847 T 2 2
162 Cuba 12848 A 2 2
163 Cuba 12849 G 2 2
164 Cuba 12850 A 2 2
165 Cuba 12851 T 2 2
166 Cuba 12852 T 2 2
167 Cuba 12853 C 2 2
168 Cuba 12854 C 2 2
169 Cuba 12855 C 2 2
170 Cuba 12856 T 2 2
171 Cuba 12857 A 2 2
172 Cuba 12858 A 2 2
173 Cuba 12859 G 2 2
174 Cuba 12860 A 2 2
175 Cuba 12861 G 2 2
176 Cuba 12862 T 2 2
177 Cuba 12863 G 2 2
178 Cuba 12864 A 2 2
179 Cuba 12865 T 2 2
180 Cuba 12866 G 2 2
181 Cuba 12867 G 2 2
182 Cuba 12868 A 2 2
183 Cuba 12869 A 2 2
184 Cuba 12870 C 2 2
185 Cuba 12871 T 2 2
186 Cuba 12872 G 2 2
187 Cuba 12873 G 2 2
188 Cuba 12874 T 2 2
189 Cuba 12875 A 2 2
190 Cuba 12876 C 2 2
191 Cuba 12877 T 2 2
192 Cuba 12878 A 2 2
193 Cuba 12879 T 2 2
194 Cuba 12880 C 2 2
195 Cuba 12881 T 2 2
196 Cuba 12882 A 2 2
197 Cuba 12883 T 2 2
198 Cuba 12884 A 2 2
199 Cuba 12885 C 2 2
200 Cuba 12886 A 2 2
201 Cuba 12887 G 2 2
202 Cuba 12888 A 2 2
203 Cuba 12889 A 2 2
204 Cuba 12890 C 2 2
205 Cuba 12891 T 2 2
206 Cuba 12892 G 2 2
207 Cuba 12893 G 2 2
208 Cuba 12894 A 2 2
209 Cuba 12895 A 2 2
210 Cuba 12896 C 2 2
211 Cuba 12897 C 2 2
212 Cuba 12898 A 2 2
213 Cuba 12899 C 2 2
214 Cuba 12900 C 2 2
215 Cuba 12901 T 2 2
216 Cuba 12902 T 2 2
217 Cuba 12903 G 2 2
218 Cuba 12904 T 2 2
219 Cuba 12905 A 2 2
220 Cuba 12906 G 2 2
221 Cuba 12907 G 2 2
222 Cuba 12908 T 2 2
223 Cuba 12909 T 2 2
224 Cuba 12910 T 2 2
225 Cuba 12911 G 2 2
226 Cuba 12912 T 2 2
227 Cuba 12913 T 2 2
228 Cuba 12914 A 2 2
229 Cuba 12915 C 2 2
230 Cuba 12916 A 2 2
231 Cuba 12917 G 2 2
232 Cuba 12918 A 2 2
233 Cuba 12919 C 2 2
234 Cuba 12920 A 2 2
235 Cuba 12921 C 2 2
236 Cuba 12922 A 2 2
237 Cuba 12923 C 2 2
238 Cuba 12924 C 2 2
239 Cuba 12925 T 2 2
240 Cuba 12926 A 2 2
241 Cuba 12927 A 2 2
242 Cuba 12928 A 2 2
243 Cuba 12929 G 2 2
244 Cuba 12930 G 2 2
245 Cuba 12931 T 2 2
246 Cuba 12932 C 2 2
247 Cuba 12933 C 2 2
248 Cuba 12934 T 2 2
249 Cuba 12935 A 2 2
250 Cuba 12936 A 2 2
251 Cuba 12937 A 2 2
252 Cuba 12938 G 2 2
253 Cuba 12939 T 2 2
254 Cuba 12940 G 2 2
255 Cuba 12941 A 2 2
256 Cuba 12942 A 2 2
257 Cuba 12943 G 2 2
258 Cuba 12944 T 2 2
259 Cuba 12945 A 2 2
260 Cuba 12946 T 2 2
261 Cuba 12947 T 2 2
262 Cuba 12948 T 2 2
263 Cuba 12949 A 2 2
264 Cuba 12950 T 2 2
265 Cuba 12951 A 2 2
266 Cuba 12952 C 2 2
267 Cuba 12953 T 2 2
268 Cuba 12954 T 2 2
269 Cuba 12955 T 2 2
270 Cuba 12956 A 2 2
271 Cuba 12957 T 2 2
272 Cuba 12958 T 2 2
273 Cuba 12959 A 2 2
274 Cuba 12960 A 2 2
275 Cuba 12961 A 2 2
276 Cuba 12962 G 2 2
277 Cuba 12963 G 2 2
278 Cuba 12964 A 2 2
279 Cuba 12965 T 2 2
280 Cuba 12966 T 2 2
281 Cuba 12967 A 2 2
282 Cuba 12968 A 2 2
283 Cuba 12969 A 2 2
284 Cuba 12970 C 2 2
285 Cuba 12971 A 2 2
286 Cuba 12972 A 2 2
287 Cuba 12973 C 2 2
288 Cuba 12974 C 2 2
289 Cuba 12975 T 2 2
290 Cuba 12976 A 2 2
291 Cuba 12977 A 2 2
292 Cuba 12978 A 2 2
293 Cuba 12979 T 2 2
294 Cuba 12980 A 2 2
295 Cuba 12981 G 2 2
296 Cuba 12982 A 2 2
297 Cuba 12983 G 2 2
298 Cuba 12984 G 2 2
299 Cuba 12985 T 2 2
300 Cuba 12986 A 2 2
301 Cuba 12987 T 2 2
302 Cuba 12988 G 2 2
303 Cuba 12989 G 2 2
304 Cuba 12990 T 2 2
305 Cuba 12991 A 2 2
306 Cuba 12992 C 2 2
307 Cuba 12993 T 2 2
308 Cuba 12994 T 2 2
309 Cuba 12995 G 2 2
310 Cuba 12996 G 2 2
311 Cuba 12997 T 2 2
312 Cuba 12998 A 2 2
313 Cuba 12999 G 2 2
314 Cuba 13000 T 2 2
315 Cuba 13001 T 2 2
316 Cuba 13002 T 2 2
317 Cuba 13003 A 2 2
318 Cuba 13004 G 2 2
319 Cuba 13005 C 2 2
320 Cuba 13006 T 2 2
321 Cuba 13007 G 2 2
322 Cuba 13008 C 2 2
323 Cuba 13009 C 2 2
324 Cuba 13010 A 2 2
325 Cuba 13011 C 2 2
326 Cuba 13012 A 2 2
327 Cuba 13013 G 2 2
328 Cuba 13014 T 2 2
329 Cuba 13015 A 2 2
330 Cuba 13016 C 2 2
331 Cuba 13017 G 2 2
332 Cuba 13018 T 2 2
333 Cuba 13019 C 2 2
334 Cuba 13020 T 2 2
335 Cuba 13021 A 2 2
336 Cuba 13022 C 2 2
337 Cuba 13023 A 2 2
338 Cuba 13024 A 2 2