National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6             1                        
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Croatia 12686 A 50 50
1 Croatia 12687 A 50 50
2 Croatia 12688 T 50 50
3 Croatia 12689 A 50 50
4 Croatia 12690 A 50 50
5 Croatia 12691 T 50 50
6 Croatia 12692 G 50 50
7 Croatia 12693 A 50 50
8 Croatia 12694 G 50 50
9 Croatia 12695 C 50 50
10 Croatia 12696 T 50 50
11 Croatia 12697 T 50 50
12 Croatia 12698 A 50 50
13 Croatia 12699 G 50 50
14 Croatia 12700 T 50 50
15 Croatia 12701 C 50 50
16 Croatia 12702 C 50 50
17 Croatia 12703 T 50 50
18 Croatia 12704 G 50 50
19 Croatia 12705 T 50 50
20 Croatia 12706 T 50 50
21 Croatia 12707 G 50 50
22 Croatia 12708 C 50 50
23 Croatia 12709 A 50 50
24 Croatia 12710 C 50 50
25 Croatia 12711 T 50 50
26 Croatia 12712 A 50 50
27 Croatia 12713 C 50 50
28 Croatia 12714 G 50 50
29 Croatia 12715 A 50 50
30 Croatia 12716 C 50 50
31 Croatia 12717 A 50 50
32 Croatia 12718 G 50 50
33 Croatia 12719 A 50 50
34 Croatia 12720 T 50 50
35 Croatia 12721 G 50 50
36 Croatia 12722 T 50 50
37 Croatia 12723 C 50 50
38 Croatia 12724 T 50 50
39 Croatia 12725 T 50 50
40 Croatia 12726 G 50 50
41 Croatia 12727 T 50 50
42 Croatia 12728 G 50 50
43 Croatia 12729 C 50 50
44 Croatia 12730 T 50 50
45 Croatia 12731 G 50 50
46 Croatia 12732 C 50 50
47 Croatia 12733 C 50 50
48 Croatia 12734 G 50 50
49 Croatia 12735 G 50 50
50 Croatia 12736 T 50 50
51 Croatia 12737 A 50 50
52 Croatia 12738 C 50 50
53 Croatia 12739 T 50 50
54 Croatia 12740 A 50 50
55 Croatia 12741 C 50 50
56 Croatia 12742 A 50 50
57 Croatia 12743 C 50 50
58 Croatia 12744 A 50 50
59 Croatia 12745 A 50 50
60 Croatia 12746 A 50 50
61 Croatia 12747 C 50 50
62 Croatia 12748 T 50 50
63 Croatia 12749 G 50 50
64 Croatia 12750 C 50 49
65 Croatia 12751 T 50 50
66 Croatia 12752 T 50 50
67 Croatia 12753 G 50 50
68 Croatia 12754 C 50 50
69 Croatia 12755 A 50 50
70 Croatia 12756 C 50 50
71 Croatia 12757 T 50 50
72 Croatia 12758 G 50 50
73 Croatia 12759 A 50 50
74 Croatia 12760 T 50 50
75 Croatia 12761 G 50 50
76 Croatia 12762 A 50 50
77 Croatia 12763 C 50 50
78 Croatia 12764 A 50 50
79 Croatia 12765 A 50 50
80 Croatia 12766 T 50 50
81 Croatia 12767 G 50 50
82 Croatia 12768 C 50 50
83 Croatia 12769 G 50 50
84 Croatia 12770 T 50 50
85 Croatia 12771 T 50 50
86 Croatia 12772 A 50 50
87 Croatia 12773 G 50 50
88 Croatia 12774 C 50 50
89 Croatia 12775 T 50 50
90 Croatia 12776 T 50 50
91 Croatia 12777 A 50 50
92 Croatia 12778 C 50 50
93 Croatia 12779 T 50 50
94 Croatia 12780 A 50 50
95 Croatia 12781 C 50 50
96 Croatia 12782 A 50 50
97 Croatia 12783 A 50 50
98 Croatia 12784 C 50 50
99 Croatia 12785 A 50 50
100 Croatia 12786 C 50 50
101 Croatia 12787 A 50 50
102 Croatia 12788 A 50 50
103 Croatia 12789 C 50 50
104 Croatia 12790 A 50 50
105 Croatia 12791 A 50 50
106 Croatia 12792 A 50 50
107 Croatia 12793 G 50 50
108 Croatia 12794 G 50 50
109 Croatia 12795 G 50 50
110 Croatia 12796 A 50 50
111 Croatia 12797 G 50 50
112 Croatia 12798 G 50 50
113 Croatia 12799 T 50 50
114 Croatia 12800 A 50 50
115 Croatia 12801 G 50 50
116 Croatia 12802 G 50 50
117 Croatia 12803 T 50 50
118 Croatia 12804 T 50 50
119 Croatia 12805 T 50 50
120 Croatia 12806 G 50 50
121 Croatia 12807 T 50 50
122 Croatia 12808 A 50 50
123 Croatia 12809 C 50 50
124 Croatia 12810 T 50 50
125 Croatia 12811 T 50 50
126 Croatia 12812 G 50 50
127 Croatia 12813 C 50 50
128 Croatia 12814 A 50 50
129 Croatia 12815 C 50 50
130 Croatia 12816 T 50 50
131 Croatia 12817 G 50 50
132 Croatia 12818 T 50 50
133 Croatia 12819 T 50 50
134 Croatia 12820 A 50 50
135 Croatia 12821 T 50 50
136 Croatia 12822 C 50 50
137 Croatia 12823 C 50 50
138 Croatia 12824 G 50 50
139 Croatia 12825 A 50 50
140 Croatia 12826 T 50 50
141 Croatia 12827 T 50 50
142 Croatia 12828 T 50 50
143 Croatia 12829 A 50 50
144 Croatia 12830 C 50 50
145 Croatia 12831 A 50 50
146 Croatia 12832 G 50 50
147 Croatia 12833 G 50 50
148 Croatia 12834 A 50 50
149 Croatia 12835 T 50 50
150 Croatia 12836 T 50 50
151 Croatia 12837 T 50 50
152 Croatia 12838 G 50 50
153 Croatia 12839 A 50 50
154 Croatia 12840 A 50 50
155 Croatia 12841 A 50 50
156 Croatia 12842 T 50 50
157 Croatia 12843 G 50 50
158 Croatia 12844 G 50 50
159 Croatia 12845 G 50 50
160 Croatia 12846 C 50 50
161 Croatia 12847 T 50 50
162 Croatia 12848 A 50 50
163 Croatia 12849 G 50 50
164 Croatia 12850 A 50 50
165 Croatia 12851 T 50 50
166 Croatia 12852 T 50 50
167 Croatia 12853 C 50 50
168 Croatia 12854 C 50 50
169 Croatia 12855 C 50 50
170 Croatia 12856 T 50 50
171 Croatia 12857 A 50 50
172 Croatia 12858 A 50 50
173 Croatia 12859 G 50 50
174 Croatia 12860 A 50 50
175 Croatia 12861 G 50 50
176 Croatia 12862 T 50 50
177 Croatia 12863 G 50 50
178 Croatia 12864 A 50 50
179 Croatia 12865 T 50 50
180 Croatia 12866 G 50 50
181 Croatia 12867 G 50 50
182 Croatia 12868 A 50 50
183 Croatia 12869 A 50 50
184 Croatia 12870 C 50 50
185 Croatia 12871 T 50 50
186 Croatia 12872 G 50 50
187 Croatia 12873 G 50 50
188 Croatia 12874 T 50 50
189 Croatia 12875 A 50 50
190 Croatia 12876 C 50 50
191 Croatia 12877 T 50 50
192 Croatia 12878 A 50 50
193 Croatia 12879 T 50 50
194 Croatia 12880 C 50 50
195 Croatia 12881 T 50 50
196 Croatia 12882 A 50 50
197 Croatia 12883 T 50 50
198 Croatia 12884 A 50 50
199 Croatia 12885 C 50 50
200 Croatia 12886 A 50 50
201 Croatia 12887 G 50 50
202 Croatia 12888 A 50 50
203 Croatia 12889 A 50 50
204 Croatia 12890 C 50 50
205 Croatia 12891 T 50 50
206 Croatia 12892 G 50 50
207 Croatia 12893 G 50 50
208 Croatia 12894 A 50 50
209 Croatia 12895 A 50 50
210 Croatia 12896 C 50 50
211 Croatia 12897 C 50 50
212 Croatia 12898 A 50 50
213 Croatia 12899 C 50 50
214 Croatia 12900 C 50 50
215 Croatia 12901 T 50 50
216 Croatia 12902 T 50 50
217 Croatia 12903 G 50 50
218 Croatia 12904 T 50 50
219 Croatia 12905 A 50 50
220 Croatia 12906 G 50 50
221 Croatia 12907 G 50 50
222 Croatia 12908 T 50 50
223 Croatia 12909 T 50 50
224 Croatia 12910 T 50 50
225 Croatia 12911 G 50 50
226 Croatia 12912 T 50 50
227 Croatia 12913 T 50 50
228 Croatia 12914 A 50 50
229 Croatia 12915 C 50 50
230 Croatia 12916 A 50 50
231 Croatia 12917 G 50 50
232 Croatia 12918 A 50 50
233 Croatia 12919 C 50 50
234 Croatia 12920 A 50 50
235 Croatia 12921 C 50 50
236 Croatia 12922 A 50 50
237 Croatia 12923 C 50 50
238 Croatia 12924 C 50 50
239 Croatia 12925 T 50 50
240 Croatia 12926 A 50 50
241 Croatia 12927 A 50 50
242 Croatia 12928 A 50 50
243 Croatia 12929 G 50 50
244 Croatia 12930 G 50 50
245 Croatia 12931 T 50 50
246 Croatia 12932 C 50 50
247 Croatia 12933 C 50 50
248 Croatia 12934 T 50 50
249 Croatia 12935 A 50 50
250 Croatia 12936 A 50 50
251 Croatia 12937 A 50 50
252 Croatia 12938 G 50 50
253 Croatia 12939 T 50 50
254 Croatia 12940 G 50 50
255 Croatia 12941 A 50 50
256 Croatia 12942 A 50 50
257 Croatia 12943 G 50 50
258 Croatia 12944 T 50 50
259 Croatia 12945 A 50 50
260 Croatia 12946 T 50 50
261 Croatia 12947 T 50 50
262 Croatia 12948 T 50 50
263 Croatia 12949 A 50 50
264 Croatia 12950 T 50 50
265 Croatia 12951 A 50 50
266 Croatia 12952 C 50 50
267 Croatia 12953 T 50 50
268 Croatia 12954 T 50 50
269 Croatia 12955 T 50 50
270 Croatia 12956 A 50 50
271 Croatia 12957 T 50 50
272 Croatia 12958 T 50 50
273 Croatia 12959 A 50 50
274 Croatia 12960 A 50 50
275 Croatia 12961 A 50 50
276 Croatia 12962 G 50 50
277 Croatia 12963 G 50 50
278 Croatia 12964 A 50 50
279 Croatia 12965 T 50 50
280 Croatia 12966 T 50 50
281 Croatia 12967 A 50 50
282 Croatia 12968 A 50 50
283 Croatia 12969 A 50 50
284 Croatia 12970 C 50 50
285 Croatia 12971 A 50 50
286 Croatia 12972 A 50 50
287 Croatia 12973 C 50 50
288 Croatia 12974 C 50 50
289 Croatia 12975 T 50 50
290 Croatia 12976 A 50 50
291 Croatia 12977 A 50 50
292 Croatia 12978 A 50 50
293 Croatia 12979 T 50 50
294 Croatia 12980 A 50 50
295 Croatia 12981 G 50 50
296 Croatia 12982 A 50 50
297 Croatia 12983 G 50 50
298 Croatia 12984 G 50 50
299 Croatia 12985 T 50 50
300 Croatia 12986 A 50 50
301 Croatia 12987 T 50 50
302 Croatia 12988 G T 50 47 Met4241Ile
303 Croatia 12989 G 50 50
304 Croatia 12990 T 50 50
305 Croatia 12991 A 50 50
306 Croatia 12992 C 50 50
307 Croatia 12993 T 50 50
308 Croatia 12994 T 50 50
309 Croatia 12995 G 50 50
310 Croatia 12996 G 50 50
311 Croatia 12997 T 50 50
312 Croatia 12998 A 50 50
313 Croatia 12999 G 50 50
314 Croatia 13000 T 50 50
315 Croatia 13001 T 50 50
316 Croatia 13002 T 50 50
317 Croatia 13003 A 50 50
318 Croatia 13004 G 50 50
319 Croatia 13005 C 50 50
320 Croatia 13006 T 50 50
321 Croatia 13007 G 50 50
322 Croatia 13008 C 50 50
323 Croatia 13009 C 50 50
324 Croatia 13010 A 50 50
325 Croatia 13011 C 50 50
326 Croatia 13012 A 50 50
327 Croatia 13013 G 50 50
328 Croatia 13014 T 50 50
329 Croatia 13015 A 50 50
330 Croatia 13016 C 50 50
331 Croatia 13017 G 50 50
332 Croatia 13018 T 50 50
333 Croatia 13019 C 50 50
334 Croatia 13020 T 50 50
335 Croatia 13021 A 50 50
336 Croatia 13022 C 50 50
337 Croatia 13023 A 50 50
338 Croatia 13024 A 50 50