National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                 1                    
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36             1                        
V   18                                      
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 CotedIvoire 12686 A 65 65
1 CotedIvoire 12687 A 65 65
2 CotedIvoire 12688 T 65 65
3 CotedIvoire 12689 A 65 65
4 CotedIvoire 12690 A 65 65
5 CotedIvoire 12691 T 65 65
6 CotedIvoire 12692 G 65 65
7 CotedIvoire 12693 A 65 65
8 CotedIvoire 12694 G 65 65
9 CotedIvoire 12695 C 65 65
10 CotedIvoire 12696 T 65 65
11 CotedIvoire 12697 T 65 65
12 CotedIvoire 12698 A 65 65
13 CotedIvoire 12699 G 65 65
14 CotedIvoire 12700 T 65 65
15 CotedIvoire 12701 C 65 65
16 CotedIvoire 12702 C 65 65
17 CotedIvoire 12703 T 65 65
18 CotedIvoire 12704 G 65 65
19 CotedIvoire 12705 T 65 65
20 CotedIvoire 12706 T 65 65
21 CotedIvoire 12707 G 65 65
22 CotedIvoire 12708 C 65 65
23 CotedIvoire 12709 A 65 65
24 CotedIvoire 12710 C 65 65
25 CotedIvoire 12711 T 65 65
26 CotedIvoire 12712 A 65 65
27 CotedIvoire 12713 C 65 65
28 CotedIvoire 12714 G 65 65
29 CotedIvoire 12715 A 65 65
30 CotedIvoire 12716 C 65 65
31 CotedIvoire 12717 A 65 65
32 CotedIvoire 12718 G 65 65
33 CotedIvoire 12719 A 65 65
34 CotedIvoire 12720 T 65 65
35 CotedIvoire 12721 G 65 65
36 CotedIvoire 12722 T 65 65
37 CotedIvoire 12723 C 65 65
38 CotedIvoire 12724 T 65 65
39 CotedIvoire 12725 T 65 65
40 CotedIvoire 12726 G 65 65
41 CotedIvoire 12727 T 65 65
42 CotedIvoire 12728 G 65 65
43 CotedIvoire 12729 C 65 65
44 CotedIvoire 12730 T 65 65
45 CotedIvoire 12731 G 65 65
46 CotedIvoire 12732 C 65 65
47 CotedIvoire 12733 C 65 65
48 CotedIvoire 12734 G 65 65
49 CotedIvoire 12735 G 65 65
50 CotedIvoire 12736 T 65 65
51 CotedIvoire 12737 A 65 65
52 CotedIvoire 12738 C 65 65
53 CotedIvoire 12739 T 65 65
54 CotedIvoire 12740 A 65 65
55 CotedIvoire 12741 C 65 65
56 CotedIvoire 12742 A 65 65
57 CotedIvoire 12743 C 65 65
58 CotedIvoire 12744 A 65 65
59 CotedIvoire 12745 A 65 65
60 CotedIvoire 12746 A 65 65
61 CotedIvoire 12747 C 65 65
62 CotedIvoire 12748 T 65 65
63 CotedIvoire 12749 G 65 65
64 CotedIvoire 12750 C 65 65
65 CotedIvoire 12751 T 65 65
66 CotedIvoire 12752 T 65 65
67 CotedIvoire 12753 G 65 65
68 CotedIvoire 12754 C 65 65
69 CotedIvoire 12755 A 65 65
70 CotedIvoire 12756 C 65 65
71 CotedIvoire 12757 T 65 65
72 CotedIvoire 12758 G 65 65
73 CotedIvoire 12759 A 65 65
74 CotedIvoire 12760 T 65 65
75 CotedIvoire 12761 G 65 65
76 CotedIvoire 12762 A 65 65
77 CotedIvoire 12763 C 65 65
78 CotedIvoire 12764 A 65 65
79 CotedIvoire 12765 A 65 65
80 CotedIvoire 12766 T 65 65
81 CotedIvoire 12767 G 65 65
82 CotedIvoire 12768 C 65 65
83 CotedIvoire 12769 G 65 65
84 CotedIvoire 12770 T 65 65
85 CotedIvoire 12771 T 65 65
86 CotedIvoire 12772 A 65 65
87 CotedIvoire 12773 G 65 65
88 CotedIvoire 12774 C 65 65
89 CotedIvoire 12775 T 65 65
90 CotedIvoire 12776 T 65 65
91 CotedIvoire 12777 A 65 65
92 CotedIvoire 12778 C T 65 64 Tyr4171Tyr
93 CotedIvoire 12779 T 65 65
94 CotedIvoire 12780 A 65 65
95 CotedIvoire 12781 C 65 65
96 CotedIvoire 12782 A 65 65
97 CotedIvoire 12783 A 65 65
98 CotedIvoire 12784 C 65 65
99 CotedIvoire 12785 A 65 65
100 CotedIvoire 12786 C 65 65
101 CotedIvoire 12787 A 65 65
102 CotedIvoire 12788 A 65 65
103 CotedIvoire 12789 C 65 65
104 CotedIvoire 12790 A 65 65
105 CotedIvoire 12791 A 65 65
106 CotedIvoire 12792 A 65 65
107 CotedIvoire 12793 G 65 65
108 CotedIvoire 12794 G 65 65
109 CotedIvoire 12795 G 65 65
110 CotedIvoire 12796 A 65 65
111 CotedIvoire 12797 G 65 65
112 CotedIvoire 12798 G 65 65
113 CotedIvoire 12799 T 65 65
114 CotedIvoire 12800 A 65 65
115 CotedIvoire 12801 G 65 65
116 CotedIvoire 12802 G 65 65
117 CotedIvoire 12803 T 65 65
118 CotedIvoire 12804 T 65 65
119 CotedIvoire 12805 T 65 65
120 CotedIvoire 12806 G 65 65
121 CotedIvoire 12807 T 65 65
122 CotedIvoire 12808 A 65 65
123 CotedIvoire 12809 C 65 65
124 CotedIvoire 12810 T 65 65
125 CotedIvoire 12811 T 65 65
126 CotedIvoire 12812 G 65 65
127 CotedIvoire 12813 C 65 65
128 CotedIvoire 12814 A 65 65
129 CotedIvoire 12815 C 65 65
130 CotedIvoire 12816 T 65 65
131 CotedIvoire 12817 G 65 65
132 CotedIvoire 12818 T 65 65
133 CotedIvoire 12819 T 65 65
134 CotedIvoire 12820 A G 65 35 Leu4185Leu
135 CotedIvoire 12821 T 65 65
136 CotedIvoire 12822 C 65 65
137 CotedIvoire 12823 C 65 65
138 CotedIvoire 12824 G 65 65
139 CotedIvoire 12825 A 65 65
140 CotedIvoire 12826 T 65 65
141 CotedIvoire 12827 T 65 65
142 CotedIvoire 12828 T 65 65
143 CotedIvoire 12829 A 65 65
144 CotedIvoire 12830 C 65 65
145 CotedIvoire 12831 A 65 65
146 CotedIvoire 12832 G 65 65
147 CotedIvoire 12833 G 65 65
148 CotedIvoire 12834 A 65 65
149 CotedIvoire 12835 T 65 65
150 CotedIvoire 12836 T 65 65
151 CotedIvoire 12837 T 65 65
152 CotedIvoire 12838 G 65 65
153 CotedIvoire 12839 A 65 65
154 CotedIvoire 12840 A 65 65
155 CotedIvoire 12841 A 65 65
156 CotedIvoire 12842 T 65 65
157 CotedIvoire 12843 G 65 65
158 CotedIvoire 12844 G 65 65
159 CotedIvoire 12845 G 65 65
160 CotedIvoire 12846 C 65 65
161 CotedIvoire 12847 T 65 65
162 CotedIvoire 12848 A 65 65
163 CotedIvoire 12849 G 65 65
164 CotedIvoire 12850 A 65 65
165 CotedIvoire 12851 T 65 65
166 CotedIvoire 12852 T 65 65
167 CotedIvoire 12853 C 65 65
168 CotedIvoire 12854 C 65 65
169 CotedIvoire 12855 C 65 65
170 CotedIvoire 12856 T 65 65
171 CotedIvoire 12857 A 65 65
172 CotedIvoire 12858 A 65 65
173 CotedIvoire 12859 G 65 65
174 CotedIvoire 12860 A 65 65
175 CotedIvoire 12861 G 65 65
176 CotedIvoire 12862 T 65 65
177 CotedIvoire 12863 G 65 65
178 CotedIvoire 12864 A 65 65
179 CotedIvoire 12865 T 65 65
180 CotedIvoire 12866 G 65 65
181 CotedIvoire 12867 G 65 65
182 CotedIvoire 12868 A 65 65
183 CotedIvoire 12869 A 65 65
184 CotedIvoire 12870 C T 65 64 Thr4202Ile
185 CotedIvoire 12871 T 65 65
186 CotedIvoire 12872 G 65 65
187 CotedIvoire 12873 G 65 65
188 CotedIvoire 12874 T 65 65
189 CotedIvoire 12875 A 65 65
190 CotedIvoire 12876 C 65 65
191 CotedIvoire 12877 T 65 65
192 CotedIvoire 12878 A 65 65
193 CotedIvoire 12879 T 65 65
194 CotedIvoire 12880 C 65 65
195 CotedIvoire 12881 T 65 65
196 CotedIvoire 12882 A 65 65
197 CotedIvoire 12883 T 65 65
198 CotedIvoire 12884 A 65 65
199 CotedIvoire 12885 C 65 65
200 CotedIvoire 12886 A 65 65
201 CotedIvoire 12887 G 65 65
202 CotedIvoire 12888 A 65 65
203 CotedIvoire 12889 A 65 65
204 CotedIvoire 12890 C 65 65
205 CotedIvoire 12891 T 65 65
206 CotedIvoire 12892 G 65 65
207 CotedIvoire 12893 G 65 65
208 CotedIvoire 12894 A 65 65
209 CotedIvoire 12895 A 65 65
210 CotedIvoire 12896 C 65 65
211 CotedIvoire 12897 C 65 65
212 CotedIvoire 12898 A 65 65
213 CotedIvoire 12899 C 65 65
214 CotedIvoire 12900 C 65 65
215 CotedIvoire 12901 T 65 65
216 CotedIvoire 12902 T 65 65
217 CotedIvoire 12903 G 65 65
218 CotedIvoire 12904 T 65 65
219 CotedIvoire 12905 A 65 65
220 CotedIvoire 12906 G 65 65
221 CotedIvoire 12907 G 65 65
222 CotedIvoire 12908 T 65 65
223 CotedIvoire 12909 T 65 65
224 CotedIvoire 12910 T 65 65
225 CotedIvoire 12911 G 65 65
226 CotedIvoire 12912 T 65 65
227 CotedIvoire 12913 T 65 65
228 CotedIvoire 12914 A 65 65
229 CotedIvoire 12915 C 65 65
230 CotedIvoire 12916 A 65 65
231 CotedIvoire 12917 G 65 65
232 CotedIvoire 12918 A 65 65
233 CotedIvoire 12919 C 65 65
234 CotedIvoire 12920 A 65 65
235 CotedIvoire 12921 C 65 65
236 CotedIvoire 12922 A 65 65
237 CotedIvoire 12923 C 65 65
238 CotedIvoire 12924 C 65 65
239 CotedIvoire 12925 T 65 65
240 CotedIvoire 12926 A 65 65
241 CotedIvoire 12927 A 65 65
242 CotedIvoire 12928 A 65 65
243 CotedIvoire 12929 G 65 65
244 CotedIvoire 12930 G 65 65
245 CotedIvoire 12931 T 65 65
246 CotedIvoire 12932 C 65 65
247 CotedIvoire 12933 C 65 65
248 CotedIvoire 12934 T 65 65
249 CotedIvoire 12935 A 65 65
250 CotedIvoire 12936 A 65 65
251 CotedIvoire 12937 A 65 65
252 CotedIvoire 12938 G 65 65
253 CotedIvoire 12939 T 65 65
254 CotedIvoire 12940 G 65 65
255 CotedIvoire 12941 A 65 65
256 CotedIvoire 12942 A 65 65
257 CotedIvoire 12943 G 65 65
258 CotedIvoire 12944 T 65 65
259 CotedIvoire 12945 A 65 65
260 CotedIvoire 12946 T 65 65
261 CotedIvoire 12947 T 65 65
262 CotedIvoire 12948 T 65 65
263 CotedIvoire 12949 A 65 65
264 CotedIvoire 12950 T 65 65
265 CotedIvoire 12951 A 65 65
266 CotedIvoire 12952 C 65 65
267 CotedIvoire 12953 T 65 65
268 CotedIvoire 12954 T 65 65
269 CotedIvoire 12955 T 65 65
270 CotedIvoire 12956 A 65 65
271 CotedIvoire 12957 T 65 65
272 CotedIvoire 12958 T 65 65
273 CotedIvoire 12959 A 65 65
274 CotedIvoire 12960 A 65 65
275 CotedIvoire 12961 A 65 65
276 CotedIvoire 12962 G 65 65
277 CotedIvoire 12963 G 65 65
278 CotedIvoire 12964 A 65 65
279 CotedIvoire 12965 T 65 65
280 CotedIvoire 12966 T 65 65
281 CotedIvoire 12967 A 65 65
282 CotedIvoire 12968 A 65 65
283 CotedIvoire 12969 A 65 65
284 CotedIvoire 12970 C 65 65
285 CotedIvoire 12971 A 65 65
286 CotedIvoire 12972 A 65 65
287 CotedIvoire 12973 C 65 65
288 CotedIvoire 12974 C 65 65
289 CotedIvoire 12975 T 65 65
290 CotedIvoire 12976 A 65 65
291 CotedIvoire 12977 A 65 65
292 CotedIvoire 12978 A 65 65
293 CotedIvoire 12979 T 65 65
294 CotedIvoire 12980 A 65 65
295 CotedIvoire 12981 G 65 65
296 CotedIvoire 12982 A 65 65
297 CotedIvoire 12983 G 65 65
298 CotedIvoire 12984 G 65 65
299 CotedIvoire 12985 T 65 65
300 CotedIvoire 12986 A 65 65
301 CotedIvoire 12987 T 65 65
302 CotedIvoire 12988 G 65 65
303 CotedIvoire 12989 G 65 65
304 CotedIvoire 12990 T 65 65
305 CotedIvoire 12991 A 65 65
306 CotedIvoire 12992 C 65 65
307 CotedIvoire 12993 T 65 65
308 CotedIvoire 12994 T 65 65
309 CotedIvoire 12995 G 65 65
310 CotedIvoire 12996 G 65 65
311 CotedIvoire 12997 T 65 65
312 CotedIvoire 12998 A 65 65
313 CotedIvoire 12999 G 65 65
314 CotedIvoire 13000 T 65 65
315 CotedIvoire 13001 T 65 65
316 CotedIvoire 13002 T 65 65
317 CotedIvoire 13003 A 65 65
318 CotedIvoire 13004 G 65 65
319 CotedIvoire 13005 C 65 65
320 CotedIvoire 13006 T 65 65
321 CotedIvoire 13007 G 65 65
322 CotedIvoire 13008 C 65 65
323 CotedIvoire 13009 C 65 65
324 CotedIvoire 13010 A 65 65
325 CotedIvoire 13011 C 65 65
326 CotedIvoire 13012 A 65 65
327 CotedIvoire 13013 G 65 65
328 CotedIvoire 13014 T 65 65
329 CotedIvoire 13015 A 65 65
330 CotedIvoire 13016 C 65 65
331 CotedIvoire 13017 G 65 65
332 CotedIvoire 13018 T 65 65
333 CotedIvoire 13019 C 65 65
334 CotedIvoire 13020 T 65 65
335 CotedIvoire 13021 A 65 65
336 CotedIvoire 13022 C 65 65
337 CotedIvoire 13023 A 65 65
338 CotedIvoire 13024 A 65 65