National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                                    
C   9   1                                  
D   18                                      
E   9                                      
F   12                                      
G   27                             1        
I   6                                      
K   21                                      
L   45                                      
M   6                                 1    
N   21                     1                
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36             1                        
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Colombia 12686 A 283 283
1 Colombia 12687 A 283 283
2 Colombia 12688 T 283 283
3 Colombia 12689 A 283 283
4 Colombia 12690 A 283 283
5 Colombia 12691 T 283 283
6 Colombia 12692 G 283 283
7 Colombia 12693 A 283 283
8 Colombia 12694 G 283 283
9 Colombia 12695 C 283 283
10 Colombia 12696 T 283 283
11 Colombia 12697 T 283 283
12 Colombia 12698 A 283 283
13 Colombia 12699 G 283 283
14 Colombia 12700 T 283 283
15 Colombia 12701 C 283 283
16 Colombia 12702 C 283 283
17 Colombia 12703 T 283 283
18 Colombia 12704 G 283 283
19 Colombia 12705 T 283 283
20 Colombia 12706 T 283 283
21 Colombia 12707 G 283 283
22 Colombia 12708 C 283 283
23 Colombia 12709 A 283 283
24 Colombia 12710 C 283 283
25 Colombia 12711 T 283 283
26 Colombia 12712 A 283 283
27 Colombia 12713 C 283 283
28 Colombia 12714 G 283 283
29 Colombia 12715 A 283 283
30 Colombia 12716 C 283 283
31 Colombia 12717 A 283 283
32 Colombia 12718 G 283 283
33 Colombia 12719 A 283 283
34 Colombia 12720 T 283 283
35 Colombia 12721 G 283 283
36 Colombia 12722 T 283 283
37 Colombia 12723 C 283 283
38 Colombia 12724 T 283 283
39 Colombia 12725 T 283 283
40 Colombia 12726 G 283 283
41 Colombia 12727 T 283 283
42 Colombia 12728 G 283 283
43 Colombia 12729 C 283 283
44 Colombia 12730 T G 283 282 Ala4155Ala
45 Colombia 12731 G 283 283
46 Colombia 12732 C 283 283
47 Colombia 12733 C 288 288
48 Colombia 12734 G 288 288
49 Colombia 12735 G 288 288
50 Colombia 12736 T 288 288
51 Colombia 12737 A 288 288
52 Colombia 12738 C 288 288
53 Colombia 12739 T 288 288
54 Colombia 12740 A 288 288
55 Colombia 12741 C 288 288
56 Colombia 12742 A 288 288
57 Colombia 12743 C 288 288
58 Colombia 12744 A 288 288
59 Colombia 12745 A 288 288
60 Colombia 12746 A 288 288
61 Colombia 12747 C 288 288
62 Colombia 12748 T 288 288
63 Colombia 12749 G 288 288
64 Colombia 12750 C 288 288
65 Colombia 12751 T 288 288
66 Colombia 12752 T 288 288
67 Colombia 12753 G 288 288
68 Colombia 12754 C T 288 287 Cys4163Cys
69 Colombia 12755 A 288 288
70 Colombia 12756 C 288 288
71 Colombia 12757 T 288 288
72 Colombia 12758 G 288 288
73 Colombia 12759 A 288 288
74 Colombia 12760 T 288 288
75 Colombia 12761 G 288 288
76 Colombia 12762 A 288 288
77 Colombia 12763 C 288 288
78 Colombia 12764 A 288 288
79 Colombia 12765 A 288 288
80 Colombia 12766 T 288 288
81 Colombia 12767 G 288 288
82 Colombia 12768 C 288 288
83 Colombia 12769 G 288 288
84 Colombia 12770 T 288 288
85 Colombia 12771 T 288 288
86 Colombia 12772 A 288 288
87 Colombia 12773 G 288 288
88 Colombia 12774 C 288 288
89 Colombia 12775 T 288 288
90 Colombia 12776 T 288 288
91 Colombia 12777 A 288 288
92 Colombia 12778 C 288 288
93 Colombia 12779 T 288 288
94 Colombia 12780 A 286 286
95 Colombia 12781 C 286 286
96 Colombia 12782 A 286 286
97 Colombia 12783 A 286 286
98 Colombia 12784 C 286 286
99 Colombia 12785 A 286 286
100 Colombia 12786 C 286 286
101 Colombia 12787 A 286 286
102 Colombia 12788 A 286 286
103 Colombia 12789 C T 286 284 Thr4175Ile
104 Colombia 12790 A 286 286
105 Colombia 12791 A 286 286
106 Colombia 12792 A 286 286
107 Colombia 12793 G 286 286
108 Colombia 12794 G 286 286
109 Colombia 12795 G 286 286
110 Colombia 12796 A 286 286
111 Colombia 12797 G A 286 285 Gly4178Ser
112 Colombia 12798 G 286 286
113 Colombia 12799 T 286 286
114 Colombia 12800 A 286 286
115 Colombia 12801 G 286 286
116 Colombia 12802 G 286 286
117 Colombia 12803 T 286 286
118 Colombia 12804 T 286 286
119 Colombia 12805 T 286 286
120 Colombia 12806 G 286 286
121 Colombia 12807 T 286 286
122 Colombia 12808 A 286 286
123 Colombia 12809 C 286 286
124 Colombia 12810 T 286 286
125 Colombia 12811 T 286 286
126 Colombia 12812 G 286 286
127 Colombia 12813 C 286 286
128 Colombia 12814 A 286 286
129 Colombia 12815 C 286 286
130 Colombia 12816 T 286 286
131 Colombia 12817 G 286 286
132 Colombia 12818 T 286 286
133 Colombia 12819 T 286 286
134 Colombia 12820 A 286 286
135 Colombia 12821 T 286 286
136 Colombia 12822 C 286 286
137 Colombia 12823 C 286 286
138 Colombia 12824 G 286 286
139 Colombia 12825 A 286 286
140 Colombia 12826 T 286 286
141 Colombia 12827 T 286 286
142 Colombia 12828 T 286 286
143 Colombia 12829 A 286 286
144 Colombia 12830 C 286 286
145 Colombia 12831 A 286 286
146 Colombia 12832 G 286 286
147 Colombia 12833 G 286 286
148 Colombia 12834 A 286 286
149 Colombia 12835 T 286 286
150 Colombia 12836 T 286 286
151 Colombia 12837 T 286 286
152 Colombia 12838 G 286 286
153 Colombia 12839 A 286 286
154 Colombia 12840 A 286 286
155 Colombia 12841 A 286 286
156 Colombia 12842 T 286 286
157 Colombia 12843 G 286 286
158 Colombia 12844 G 286 286
159 Colombia 12845 G 286 286
160 Colombia 12846 C 286 286
161 Colombia 12847 T 286 286
162 Colombia 12848 A 286 286
163 Colombia 12849 G 286 286
164 Colombia 12850 A 286 286
165 Colombia 12851 T 286 286
166 Colombia 12852 T 286 286
167 Colombia 12853 C 286 286
168 Colombia 12854 C 286 286
169 Colombia 12855 C 286 286
170 Colombia 12856 T 286 286
171 Colombia 12857 A 286 286
172 Colombia 12858 A 286 286
173 Colombia 12859 G 286 286
174 Colombia 12860 A 286 286
175 Colombia 12861 G 286 286
176 Colombia 12862 T 286 286
177 Colombia 12863 G 286 286
178 Colombia 12864 A 286 286
179 Colombia 12865 T 286 286
180 Colombia 12866 G 286 286
181 Colombia 12867 G 286 286
182 Colombia 12868 A 286 286
183 Colombia 12869 A 286 286
184 Colombia 12870 C 286 286
185 Colombia 12871 T 286 286
186 Colombia 12872 G 286 286
187 Colombia 12873 G 286 286
188 Colombia 12874 T 286 286
189 Colombia 12875 A 286 286
190 Colombia 12876 C 286 286
191 Colombia 12877 T 286 286
192 Colombia 12878 A 286 286
193 Colombia 12879 T 286 286
194 Colombia 12880 C 286 286
195 Colombia 12881 T 286 286
196 Colombia 12882 A 286 286
197 Colombia 12883 T 286 286
198 Colombia 12884 A 286 286
199 Colombia 12885 C 286 286
200 Colombia 12886 A 286 286
201 Colombia 12887 G 286 286
202 Colombia 12888 A 286 286
203 Colombia 12889 A 286 286
204 Colombia 12890 C 286 286
205 Colombia 12891 T 286 286
206 Colombia 12892 G 286 286
207 Colombia 12893 G 286 286
208 Colombia 12894 A 286 286
209 Colombia 12895 A 286 286
210 Colombia 12896 C 286 286
211 Colombia 12897 C 286 286
212 Colombia 12898 A 286 286
213 Colombia 12899 C 286 286
214 Colombia 12900 C 286 286
215 Colombia 12901 T 286 286
216 Colombia 12902 T 286 286
217 Colombia 12903 G 286 286
218 Colombia 12904 T 286 286
219 Colombia 12905 A 286 286
220 Colombia 12906 G 286 286
221 Colombia 12907 G 286 286
222 Colombia 12908 T 286 286
223 Colombia 12909 T 286 286
224 Colombia 12910 T 286 286
225 Colombia 12911 G 286 286
226 Colombia 12912 T 286 286
227 Colombia 12913 T 286 286
228 Colombia 12914 A 286 286
229 Colombia 12915 C 286 286
230 Colombia 12916 A 286 286
231 Colombia 12917 G 286 286
232 Colombia 12918 A 286 286
233 Colombia 12919 C 286 286
234 Colombia 12920 A 286 286
235 Colombia 12921 C 286 286
236 Colombia 12922 A 286 286
237 Colombia 12923 C 286 286
238 Colombia 12924 C 286 286
239 Colombia 12925 T 286 286
240 Colombia 12926 A 286 286
241 Colombia 12927 A 286 286
242 Colombia 12928 A 286 286
243 Colombia 12929 G 286 286
244 Colombia 12930 G 286 286
245 Colombia 12931 T 286 286
246 Colombia 12932 C 286 286
247 Colombia 12933 C 286 286
248 Colombia 12934 T 286 286
249 Colombia 12935 A 286 286
250 Colombia 12936 A 286 286
251 Colombia 12937 A 286 286
252 Colombia 12938 G 286 286
253 Colombia 12939 T 286 286
254 Colombia 12940 G 286 286
255 Colombia 12941 A 286 286
256 Colombia 12942 A 286 286
257 Colombia 12943 G 286 286
258 Colombia 12944 T 286 286
259 Colombia 12945 A 286 286
260 Colombia 12946 T 286 286
261 Colombia 12947 T 286 286
262 Colombia 12948 T 286 286
263 Colombia 12949 A 286 286
264 Colombia 12950 T 286 286
265 Colombia 12951 A 286 286
266 Colombia 12952 C 286 285
267 Colombia 12953 T 286 286
268 Colombia 12954 T 286 286
269 Colombia 12955 T 286 286
270 Colombia 12956 A 286 286
271 Colombia 12957 T 286 286
272 Colombia 12958 T 286 286
273 Colombia 12959 A 286 286
274 Colombia 12960 A 286 286
275 Colombia 12961 A 286 286
276 Colombia 12962 G 286 286
277 Colombia 12963 G 286 286
278 Colombia 12964 A 286 286
279 Colombia 12965 T 286 286
280 Colombia 12966 T 286 286
281 Colombia 12967 A 286 286
282 Colombia 12968 A 286 286
283 Colombia 12969 A 286 286
284 Colombia 12970 C T 286 284 Asn4235Asn
285 Colombia 12971 A 286 286
286 Colombia 12972 A 286 286
287 Colombia 12973 C 286 286
288 Colombia 12974 C 286 286
289 Colombia 12975 T 286 286
290 Colombia 12976 A 286 286
291 Colombia 12977 A 286 286
292 Colombia 12978 A 286 286
293 Colombia 12979 T 286 286
294 Colombia 12980 A 286 286
295 Colombia 12981 G 286 286
296 Colombia 12982 A 286 286
297 Colombia 12983 G 286 286
298 Colombia 12984 G 286 286
299 Colombia 12985 T 286 286
300 Colombia 12986 A G 286 284 Met4241Val
301 Colombia 12987 T 286 286
302 Colombia 12988 G 286 286
303 Colombia 12989 G 286 286
304 Colombia 12990 T 286 286
305 Colombia 12991 A 286 286
306 Colombia 12992 C 286 286
307 Colombia 12993 T 286 286
308 Colombia 12994 T 286 286
309 Colombia 12995 G 286 286
310 Colombia 12996 G 286 286
311 Colombia 12997 T 286 286
312 Colombia 12998 A 286 286
313 Colombia 12999 G 286 286
314 Colombia 13000 T 286 286
315 Colombia 13001 T 286 286
316 Colombia 13002 T 286 286
317 Colombia 13003 A 286 286
318 Colombia 13004 G 286 286
319 Colombia 13005 C 286 286
320 Colombia 13006 T 286 286
321 Colombia 13007 G 286 286
322 Colombia 13008 C 286 286
323 Colombia 13009 C 286 286
324 Colombia 13010 A 286 286
325 Colombia 13011 C 286 286
326 Colombia 13012 A 286 286
327 Colombia 13013 G 286 286
328 Colombia 13014 T 286 286
329 Colombia 13015 A 286 286
330 Colombia 13016 C 286 286
331 Colombia 13017 G 286 286
332 Colombia 13018 T 286 286
333 Colombia 13019 C 286 286
334 Colombia 13020 T 286 286
335 Colombia 13021 A 286 286
336 Colombia 13022 C 286 286
337 Colombia 13023 A 286 286
338 Colombia 13024 A 286 286