National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                               1      
C   9   1                                  
D   18                     1                
E   9                                      
F   12                 1                    
G   27           1               1          
I   6             1                        
K   21               1                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15         1                            
T   36             2                        
V   18                                      
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Chile 12686 A 958 958
1 Chile 12687 A 958 958
2 Chile 12688 T 958 958
3 Chile 12689 A 958 958
4 Chile 12690 A 958 958
5 Chile 12691 T 958 958
6 Chile 12692 G 958 958
7 Chile 12693 A 958 958
8 Chile 12694 G 958 958
9 Chile 12695 C 958 958
10 Chile 12696 T 958 958
11 Chile 12697 T 958 958
12 Chile 12698 A 958 958
13 Chile 12699 G 958 958
14 Chile 12700 T 958 958
15 Chile 12701 C 958 958
16 Chile 12702 C 958 958
17 Chile 12703 T 958 958
18 Chile 12704 G 958 958
19 Chile 12705 T 958 958
20 Chile 12706 T 958 958
21 Chile 12707 G 958 958
22 Chile 12708 C 958 958
23 Chile 12709 A 958 958
24 Chile 12710 C 958 958
25 Chile 12711 T 961 961
26 Chile 12712 A 961 961
27 Chile 12713 C 961 961
28 Chile 12714 G 961 961
29 Chile 12715 A 961 961
30 Chile 12716 C 961 961
31 Chile 12717 A 961 961
32 Chile 12718 G 961 961
33 Chile 12719 A 961 961
34 Chile 12720 T 961 961
35 Chile 12721 G 961 961
36 Chile 12722 T 961 961
37 Chile 12723 C T 961 959 Ser4153Phe
38 Chile 12724 T 961 961
39 Chile 12725 T 961 961
40 Chile 12726 G 961 961
41 Chile 12727 T 961 961
42 Chile 12728 G 961 961
43 Chile 12729 C 961 961
44 Chile 12730 T 961 961
45 Chile 12731 G 961 961
46 Chile 12732 C 961 961
47 Chile 12733 C 961 961
48 Chile 12734 G 961 961
49 Chile 12735 G 961 961
50 Chile 12736 T 961 961
51 Chile 12737 A 961 961
52 Chile 12738 C 961 961
53 Chile 12739 T 961 961
54 Chile 12740 A 961 961
55 Chile 12741 C 961 961
56 Chile 12742 A 961 961
57 Chile 12743 C 961 961
58 Chile 12744 A 961 961
59 Chile 12745 A 961 961
60 Chile 12746 A 961 961
61 Chile 12747 C T 961 960 Thr4161Ile
62 Chile 12748 T 961 961
63 Chile 12749 G 961 961
64 Chile 12750 C 961 961
65 Chile 12751 T 961 961
66 Chile 12752 T 961 961
67 Chile 12753 G 961 961
68 Chile 12754 C T 961 960 Cys4163Cys
69 Chile 12755 A 961 961
70 Chile 12756 C 961 961
71 Chile 12757 T 961 961
72 Chile 12758 G 961 961
73 Chile 12759 A 961 961
74 Chile 12760 T 961 961
75 Chile 12761 G A 961 960 Asp4166Asn
76 Chile 12762 A 961 961
77 Chile 12763 C 961 961
78 Chile 12764 A 961 961
79 Chile 12765 A 961 961
80 Chile 12766 T 961 961
81 Chile 12767 G 961 961
82 Chile 12768 C 961 961
83 Chile 12769 G 961 961
84 Chile 12770 T 961 961
85 Chile 12771 T 961 961
86 Chile 12772 A 961 961
87 Chile 12773 G 961 961
88 Chile 12774 C 961 961
89 Chile 12775 T 961 961
90 Chile 12776 T 961 961
91 Chile 12777 A 961 961
92 Chile 12778 C 961 961
93 Chile 12779 T 961 961
94 Chile 12780 A 961 961
95 Chile 12781 C T 961 958 Tyr4172Tyr
96 Chile 12782 A 961 961
97 Chile 12783 A 961 961
98 Chile 12784 C 961 961
99 Chile 12785 A 961 961
100 Chile 12786 C T 961 959 Thr4174Ile
101 Chile 12787 A 961 961
102 Chile 12788 A 961 961
103 Chile 12789 C 961 960
104 Chile 12790 A 961 961
105 Chile 12791 A 961 961
106 Chile 12792 A 961 961
107 Chile 12793 G 961 961
108 Chile 12794 G A 961 959 Gly4177Arg
109 Chile 12795 G 961 961
110 Chile 12796 A 961 961
111 Chile 12797 G 961 961
112 Chile 12798 G 961 961
113 Chile 12799 T 961 961
114 Chile 12800 A 961 961
115 Chile 12801 G 961 961
116 Chile 12802 G 961 961
117 Chile 12803 T 960 960
118 Chile 12804 T 960 960
119 Chile 12805 T 960 960
120 Chile 12806 G 960 960
121 Chile 12807 T 960 960
122 Chile 12808 A 960 960
123 Chile 12809 C 960 960
124 Chile 12810 T 960 960
125 Chile 12811 T 960 960
126 Chile 12812 G 960 960
127 Chile 12813 C 960 960
128 Chile 12814 A 960 960
129 Chile 12815 C 960 960
130 Chile 12816 T 960 960
131 Chile 12817 G 960 959
132 Chile 12818 T 960 960
133 Chile 12819 T 960 960
134 Chile 12820 A 960 960
135 Chile 12821 T 960 960
136 Chile 12822 C 960 960
137 Chile 12823 C 960 960
138 Chile 12824 G 960 960
139 Chile 12825 A 960 960
140 Chile 12826 T 960 960
141 Chile 12827 T 960 960
142 Chile 12828 T 960 960
143 Chile 12829 A 960 960
144 Chile 12830 C 960 960
145 Chile 12831 A 960 960
146 Chile 12832 G 960 960
147 Chile 12833 G 960 960
148 Chile 12834 A 960 960
149 Chile 12835 T 960 960
150 Chile 12836 T 960 960
151 Chile 12837 T 960 960
152 Chile 12838 G 960 960
153 Chile 12839 A 960 960
154 Chile 12840 A 960 960
155 Chile 12841 A G 960 959 Lys4192Lys
156 Chile 12842 T 960 960
157 Chile 12843 G 960 960
158 Chile 12844 G 960 960
159 Chile 12845 G 960 960
160 Chile 12846 C 960 960
161 Chile 12847 T 960 960
162 Chile 12848 A 960 960
163 Chile 12849 G 960 960
164 Chile 12850 A 960 960
165 Chile 12851 T 960 960
166 Chile 12852 T 960 960
167 Chile 12853 C 960 960
168 Chile 12854 C 960 960
169 Chile 12855 C 960 960
170 Chile 12856 T 960 960
171 Chile 12857 A 960 960
172 Chile 12858 A 960 959
173 Chile 12859 G 960 960
174 Chile 12860 A 960 960
175 Chile 12861 G 960 960
176 Chile 12862 T 960 960
177 Chile 12863 G 960 960
178 Chile 12864 A 961 961
179 Chile 12865 T 961 961
180 Chile 12866 G 961 961
181 Chile 12867 G 961 961
182 Chile 12868 A 961 961
183 Chile 12869 A 961 961
184 Chile 12870 C 961 961
185 Chile 12871 T 961 961
186 Chile 12872 G 961 961
187 Chile 12873 G 961 961
188 Chile 12874 T 961 961
189 Chile 12875 A 961 961
190 Chile 12876 C 961 961
191 Chile 12877 T 961 961
192 Chile 12878 A 961 961
193 Chile 12879 T 961 961
194 Chile 12880 C T 961 960 Ile4205Ile
195 Chile 12881 T 961 961
196 Chile 12882 A 961 961
197 Chile 12883 T 961 961
198 Chile 12884 A 961 961
199 Chile 12885 C 961 961
200 Chile 12886 A 961 961
201 Chile 12887 G 961 961
202 Chile 12888 A 961 961
203 Chile 12889 A 961 961
204 Chile 12890 C 961 961
205 Chile 12891 T 961 961
206 Chile 12892 G 961 961
207 Chile 12893 G 961 961
208 Chile 12894 A 961 961
209 Chile 12895 A 961 961
210 Chile 12896 C 961 961
211 Chile 12897 C 961 961
212 Chile 12898 A 961 961
213 Chile 12899 C 961 961
214 Chile 12900 C 961 961
215 Chile 12901 T 961 961
216 Chile 12902 T 961 961
217 Chile 12903 G 961 961
218 Chile 12904 T 961 961
219 Chile 12905 A 961 961
220 Chile 12906 G 961 961
221 Chile 12907 G 961 961
222 Chile 12908 T 961 961
223 Chile 12909 T 961 961
224 Chile 12910 T A 961 960 Phe4215Leu
225 Chile 12911 G 961 961
226 Chile 12912 T 961 961
227 Chile 12913 T 961 961
228 Chile 12914 A 961 961
229 Chile 12915 C 961 961
230 Chile 12916 A 961 961
231 Chile 12917 G 961 961
232 Chile 12918 A 961 961
233 Chile 12919 C 961 961
234 Chile 12920 A 961 961
235 Chile 12921 C 961 961
236 Chile 12922 A 961 961
237 Chile 12923 C 961 961
238 Chile 12924 C 961 961
239 Chile 12925 T 961 961
240 Chile 12926 A 961 961
241 Chile 12927 A 961 961
242 Chile 12928 A 961 961
243 Chile 12929 G 961 961
244 Chile 12930 G 961 961
245 Chile 12931 T 961 961
246 Chile 12932 C 961 960
247 Chile 12933 C 961 961
248 Chile 12934 T 961 961
249 Chile 12935 A 961 961
250 Chile 12936 A 961 961
251 Chile 12937 A 961 961
252 Chile 12938 G 961 961
253 Chile 12939 T 961 961
254 Chile 12940 G 961 961
255 Chile 12941 A 961 961
256 Chile 12942 A 961 961
257 Chile 12943 G 961 961
258 Chile 12944 T 961 961
259 Chile 12945 A 961 961
260 Chile 12946 T 961 961
261 Chile 12947 T 961 961
262 Chile 12948 T 961 961
263 Chile 12949 A 961 961
264 Chile 12950 T 961 961
265 Chile 12951 A 961 961
266 Chile 12952 C 961 961
267 Chile 12953 T 961 961
268 Chile 12954 T 961 961
269 Chile 12955 T 961 961
270 Chile 12956 A 961 961
271 Chile 12957 T 961 961
272 Chile 12958 T 961 961
273 Chile 12959 A 961 961
274 Chile 12960 A 961 961
275 Chile 12961 A 961 961
276 Chile 12962 G 961 961
277 Chile 12963 G 961 961
278 Chile 12964 A 961 961
279 Chile 12965 T 961 961
280 Chile 12966 T 961 961
281 Chile 12967 A 961 961
282 Chile 12968 A 961 961
283 Chile 12969 A 961 961
284 Chile 12970 C 961 961
285 Chile 12971 A 961 961
286 Chile 12972 A 961 961
287 Chile 12973 C 961 961
288 Chile 12974 C 961 961
289 Chile 12975 T 961 961
290 Chile 12976 A 961 961
291 Chile 12977 A 961 961
292 Chile 12978 A 961 961
293 Chile 12979 T 961 961
294 Chile 12980 A 961 961
295 Chile 12981 G 961 961
296 Chile 12982 A 961 961
297 Chile 12983 G 961 961
298 Chile 12984 G 961 961
299 Chile 12985 T C 961 960 Gly4240Gly
300 Chile 12986 A 961 961
301 Chile 12987 T 961 961
302 Chile 12988 G 961 961
303 Chile 12989 G 961 961
304 Chile 12990 T 961 961
305 Chile 12991 A 961 961
306 Chile 12992 C 961 961
307 Chile 12993 T 961 961
308 Chile 12994 T 961 961
309 Chile 12995 G 961 961
310 Chile 12996 G 961 961
311 Chile 12997 T 961 961
312 Chile 12998 A 961 961
313 Chile 12999 G 961 961
314 Chile 13000 T 961 961
315 Chile 13001 T 961 961
316 Chile 13002 T 961 961
317 Chile 13003 A 961 961
318 Chile 13004 G A 961 960 Ala4247Thr
319 Chile 13005 C 961 961
320 Chile 13006 T 961 961
321 Chile 13007 G 961 961
322 Chile 13008 C 961 961
323 Chile 13009 C 961 961
324 Chile 13010 A 961 961
325 Chile 13011 C 961 961
326 Chile 13012 A 961 961
327 Chile 13013 G 961 961
328 Chile 13014 T 961 961
329 Chile 13015 A 961 961
330 Chile 13016 C 961 961
331 Chile 13017 G 961 961
332 Chile 13018 T 961 961
333 Chile 13019 C 961 961
334 Chile 13020 T 961 961
335 Chile 13021 A 961 961
336 Chile 13022 C 961 961
337 Chile 13023 A 961 961
338 Chile 13024 A 961 961