National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 2                             1      
C   9   1                                  
D   18     1                                
E   9                                      
F   12                                      
G   27           2               1     1    
I   6             1                   1    
K   21                     1                
L   45         1   2   8 1                  
M   6                                 1    
N   21                     4                
P   18                 1           2        
Q   12               1                      
R   18                           1          
S   15                             1        
T   36 1           7                 2      
V   18                                      
W   3                                      
Y   15                                     2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Canada 12686 A 8554 8554
1 Canada 12687 A 8554 8554
2 Canada 12688 T C 8554 8553 Asn4141Asn
3 Canada 12689 A 8554 8554
4 Canada 12690 A 8554 8554
5 Canada 12691 T 8554 8554
6 Canada 12692 G 8554 8554
7 Canada 12693 A 8554 8554
8 Canada 12694 G 8554 8554
9 Canada 12695 C 8554 8552
10 Canada 12696 T 8554 8554
11 Canada 12697 T 8554 8554
12 Canada 12698 A 8554 8554
13 Canada 12699 G 8554 8554
14 Canada 12700 T 8554 8554
15 Canada 12701 C 8554 8554
16 Canada 12702 C 8554 8554
17 Canada 12703 T 8554 8554
18 Canada 12704 G 8554 8554
19 Canada 12705 T 8554 8554
20 Canada 12706 T 8554 8554
21 Canada 12707 G A 8554 8553 Ala4148Thr
22 Canada 12708 C 8554 8554
23 Canada 12709 A 8554 8554
24 Canada 12710 C T 8554 8552 Leu4149Leu
25 Canada 12711 T 8554 8554
26 Canada 12712 A 8554 8554
27 Canada 12713 C 8554 8554
28 Canada 12714 G 8554 8554
29 Canada 12715 A 8554 8554
30 Canada 12716 C 8554 8554
31 Canada 12717 A 8554 8554
32 Canada 12718 G 8554 8554
33 Canada 12719 A 8554 8554
34 Canada 12720 T 8554 8554
35 Canada 12721 G 8554 8554
36 Canada 12722 T 8554 8554
37 Canada 12723 C 8554 8554
38 Canada 12724 T 8554 8554
39 Canada 12725 T 8554 8554
40 Canada 12726 G 8554 8554
41 Canada 12727 T 8554 8554
42 Canada 12728 G 8554 8554
43 Canada 12729 C 8554 8554
44 Canada 12730 T 8554 8554
45 Canada 12731 G 8554 8554
46 Canada 12732 C 8554 8554
47 Canada 12733 C 8560 8560
48 Canada 12734 G 8560 8560
49 Canada 12735 G 8560 8560
50 Canada 12736 T C 8560 8559 Gly4157Gly
51 Canada 12737 A 8560 8560
52 Canada 12738 C 8560 8559
53 Canada 12739 T C 8560 8558 Thr4158Thr
54 Canada 12740 A 8560 8560
55 Canada 12741 C T 8560 8559 Thr4159Ile
56 Canada 12742 A 8560 8560
57 Canada 12743 C 8560 8560
58 Canada 12744 A 8560 8560
59 Canada 12745 A 8560 8560
60 Canada 12746 A 8560 8560
61 Canada 12747 C T 8560 8557 Thr4161Ile
62 Canada 12748 T C 8560 8522 Thr4161Thr
63 Canada 12749 G 8560 8560
64 Canada 12750 C 8560 8560
65 Canada 12751 T 8560 8560
66 Canada 12752 T 8560 8560
67 Canada 12753 G 8560 8560
68 Canada 12754 C T 8560 8559 Cys4163Cys
69 Canada 12755 A 8560 8560
70 Canada 12756 C T 8560 8557 Thr4164Ile
71 Canada 12757 T 8560 8560
72 Canada 12758 G 8560 8560
73 Canada 12759 A 8560 8560
74 Canada 12760 T 8560 8560
75 Canada 12761 G 8560 8560
76 Canada 12762 A 8560 8560
77 Canada 12763 C T 8560 8558 Asp4166Asp
78 Canada 12764 A 8560 8560
79 Canada 12765 A 8560 8560
80 Canada 12766 T 8560 8560
81 Canada 12767 G 8560 8560
82 Canada 12768 C 8560 8560
83 Canada 12769 G T 8560 8559 Ala4168Ala
84 Canada 12770 T 8560 8560
85 Canada 12771 T 8560 8560
86 Canada 12772 A 8560 8560
87 Canada 12773 G 8560 8560
88 Canada 12774 C 8560 8559
89 Canada 12775 T 8560 8560
90 Canada 12776 T 8560 8560
91 Canada 12777 A 8560 8560
92 Canada 12778 C T 8560 8556 Tyr4171Tyr
93 Canada 12779 T 8560 8560
94 Canada 12780 A 8553 8552
95 Canada 12781 C T 8552 8548 Tyr4172Tyr
96 Canada 12782 A 8552 8552
97 Canada 12783 A 8552 8552
98 Canada 12784 C 8552 8552
99 Canada 12785 A 8552 8552
100 Canada 12786 C T 8552 8542 Thr4174Ile
101 Canada 12787 A 8552 8552
102 Canada 12788 A 8552 8552
103 Canada 12789 C T 8552 8550 Thr4175Ile
104 Canada 12790 A 8552 8552
105 Canada 12791 A 8552 8552
106 Canada 12792 A 8552 8552
107 Canada 12793 G T 8552 8551 Lys4176Asn
108 Canada 12794 G A 8552 8549 Gly4177Arg
109 Canada 12795 G 8552 8552
110 Canada 12796 A 8552 8552
111 Canada 12797 G 8552 8552
112 Canada 12798 G T 8552 8551 Gly4178Val
113 Canada 12799 T 8552 8552
114 Canada 12800 A 8552 8552
115 Canada 12801 G 8552 8552
116 Canada 12802 G 8552 8552
117 Canada 12803 T 8552 8552
118 Canada 12804 T 8552 8552
119 Canada 12805 T 8552 8551
120 Canada 12806 G 8552 8552
121 Canada 12807 T 8552 8552
122 Canada 12808 A 8552 8551
123 Canada 12809 C T 8552 8544 Leu4182Phe
124 Canada 12810 T 8552 8552
125 Canada 12811 T 8552 8552
126 Canada 12812 G 8552 8552
127 Canada 12813 C 8552 8552
128 Canada 12814 A G 8552 8551 Ala4183Ala
129 Canada 12815 C T,A 8552 8546 Leu4184Met-p.Leu4184Leu
130 Canada 12816 T 8552 8552
131 Canada 12817 G A 8552 8551 Leu4184Leu
132 Canada 12818 T 8552 8551
133 Canada 12819 T 8552 8551
134 Canada 12820 A G 8552 8526 Leu4185Leu
135 Canada 12821 T 8552 8551
136 Canada 12822 C 8552 8551
137 Canada 12823 C T 8552 8544 Ser4186Ser
138 Canada 12824 G 8552 8551
139 Canada 12825 A 8552 8551
140 Canada 12826 T 8552 8551
141 Canada 12827 T 8552 8552
142 Canada 12828 T 8552 8552
143 Canada 12829 A 8552 8552
144 Canada 12830 C A 8552 8551 Gln4189Lys
145 Canada 12831 A 8552 8552
146 Canada 12832 G 8552 8552
147 Canada 12833 G 8552 8552
148 Canada 12834 A 8552 8552
149 Canada 12835 T 8552 8552
150 Canada 12836 T 8552 8552
151 Canada 12837 T 8552 8552
152 Canada 12838 G 8552 8552
153 Canada 12839 A 8552 8552
154 Canada 12840 A 8552 8552
155 Canada 12841 A 8552 8552
156 Canada 12842 T 8552 8552
157 Canada 12843 G 8552 8552
158 Canada 12844 G 8552 8552
159 Canada 12845 G 8552 8552
160 Canada 12846 C 8552 8552
161 Canada 12847 T 8552 8551
162 Canada 12848 A 8552 8552
163 Canada 12849 G 8552 8552
164 Canada 12850 A G 8552 8549 Arg4195Arg
165 Canada 12851 T 8552 8552
166 Canada 12852 T 8552 8552
167 Canada 12853 C 8552 8552
168 Canada 12854 C T 8552 8548 Pro4197Ser
169 Canada 12855 C 8552 8552
170 Canada 12856 T 8552 8552
171 Canada 12857 A 8552 8552
172 Canada 12858 A 8552 8552
173 Canada 12859 G 8552 8552
174 Canada 12860 A 8552 8551
175 Canada 12861 G 8552 8552
176 Canada 12862 T 8552 8552
177 Canada 12863 G 8552 8552
178 Canada 12864 A 8552 8552
179 Canada 12865 T 8552 8552
180 Canada 12866 G 8552 8552
181 Canada 12867 G 8552 8552
182 Canada 12868 A 8552 8552
183 Canada 12869 A 8552 8552
184 Canada 12870 C 8552 8552
185 Canada 12871 T 8552 8552
186 Canada 12872 G 8552 8552
187 Canada 12873 G 8552 8552
188 Canada 12874 T 8552 8552
189 Canada 12875 A 8552 8552
190 Canada 12876 C 8552 8552
191 Canada 12877 T 8552 8552
192 Canada 12878 A G 8552 8551 Ile4205Val
193 Canada 12879 T 8552 8552
194 Canada 12880 C T 8552 8527 Ile4205Ile
195 Canada 12881 T 8552 8552
196 Canada 12882 A 8552 8552
197 Canada 12883 T 8552 8552
198 Canada 12884 A G 8552 8551 Thr4207Ala
199 Canada 12885 C T 8552 8546 Thr4207Ile
200 Canada 12886 A 8552 8552
201 Canada 12887 G 8552 8552
202 Canada 12888 A 8552 8552
203 Canada 12889 A 8552 8552
204 Canada 12890 C T 8552 8551 Leu4209Leu
205 Canada 12891 T 8552 8552
206 Canada 12892 G 8552 8552
207 Canada 12893 G 8552 8552
208 Canada 12894 A 8552 8552
209 Canada 12895 A 8552 8552
210 Canada 12896 C 8552 8552
211 Canada 12897 C 8552 8552
212 Canada 12898 A 8552 8552
213 Canada 12899 C 8552 8552
214 Canada 12900 C 8552 8552
215 Canada 12901 T 8552 8552
216 Canada 12902 T 8552 8552
217 Canada 12903 G 8552 8552
218 Canada 12904 T 8552 8552
219 Canada 12905 A 8552 8552
220 Canada 12906 G 8552 8552
221 Canada 12907 G 8552 8552
222 Canada 12908 T 8552 8552
223 Canada 12909 T 8552 8552
224 Canada 12910 T 8552 8552
225 Canada 12911 G 8552 8552
226 Canada 12912 T 8552 8552
227 Canada 12913 T 8552 8552
228 Canada 12914 A 8552 8552
229 Canada 12915 C 8552 8552
230 Canada 12916 A 8552 8552
231 Canada 12917 G 8552 8552
232 Canada 12918 A 8552 8552
233 Canada 12919 C 8552 8552
234 Canada 12920 A 8552 8552
235 Canada 12921 C 8552 8552
236 Canada 12922 A 8552 8552
237 Canada 12923 C T 8552 8551 Pro4220Ser
238 Canada 12924 C T 8552 8551 Pro4220Leu
239 Canada 12925 T 8552 8552
240 Canada 12926 A 8552 8552
241 Canada 12927 A 8552 8552
242 Canada 12928 A 8552 8552
243 Canada 12929 G 8552 8552
244 Canada 12930 G 8552 8552
245 Canada 12931 T 8552 8552
246 Canada 12932 C 8552 8552
247 Canada 12933 C 8552 8552
248 Canada 12934 T 8552 8552
249 Canada 12935 A 8552 8552
250 Canada 12936 A 8552 8552
251 Canada 12937 A 8552 8552
252 Canada 12938 G 8552 8552
253 Canada 12939 T 8552 8552
254 Canada 12940 G 8552 8552
255 Canada 12941 A 8552 8552
256 Canada 12942 A 8552 8552
257 Canada 12943 G 8552 8552
258 Canada 12944 T 8552 8552
259 Canada 12945 A 8552 8552
260 Canada 12946 T 8552 8552
261 Canada 12947 T 8552 8552
262 Canada 12948 T 8552 8552
263 Canada 12949 A 8552 8552
264 Canada 12950 T 8552 8552
265 Canada 12951 A 8552 8552
266 Canada 12952 C 8552 8552
267 Canada 12953 T 8552 8552
268 Canada 12954 T 8552 8552
269 Canada 12955 T 8552 8552
270 Canada 12956 A 8552 8552
271 Canada 12957 T 8552 8552
272 Canada 12958 T 8552 8552
273 Canada 12959 A 8552 8552
274 Canada 12960 A 8552 8552
275 Canada 12961 A 8552 8552
276 Canada 12962 G 8552 8552
277 Canada 12963 G 8552 8552
278 Canada 12964 A G 8552 8538 Gly4233Gly
279 Canada 12965 T A 8552 8551 Leu4234Ile
280 Canada 12966 T 8552 8552
281 Canada 12967 A 8552 8552
282 Canada 12968 A 8552 8552
283 Canada 12969 A 8552 8552
284 Canada 12970 C T 8552 8550 Asn4235Asn
285 Canada 12971 A 8552 8552
286 Canada 12972 A 8552 8552
287 Canada 12973 C T 8552 8550 Asn4236Asn
288 Canada 12974 C T,A 8552 8547 Leu4237Ile-p.Leu4237Leu
289 Canada 12975 T 8552 8552
290 Canada 12976 A 8552 8552
291 Canada 12977 A 8552 8552
292 Canada 12978 A 8552 8552
293 Canada 12979 T C 8552 8548 Asn4238Asn
294 Canada 12980 A 8552 8552
295 Canada 12981 G 8552 8552
296 Canada 12982 A 8552 8552
297 Canada 12983 G 8552 8552
298 Canada 12984 G 8552 8552
299 Canada 12985 T 8552 8552
300 Canada 12986 A G 8552 8550 Met4241Val
301 Canada 12987 T 8552 8552
302 Canada 12988 G 8552 8552
303 Canada 12989 G 8552 8552
304 Canada 12990 T 8552 8552
305 Canada 12991 A 8552 8552
306 Canada 12992 C 8552 8552
307 Canada 12993 T 8552 8552
308 Canada 12994 T C 8552 8551 Leu4243Leu
309 Canada 12995 G 8552 8552
310 Canada 12996 G 8552 8552
311 Canada 12997 T 8552 8552
312 Canada 12998 A 8552 8552
313 Canada 12999 G 8552 8552
314 Canada 13000 T 8552 8552
315 Canada 13001 T 8552 8552
316 Canada 13002 T 8552 8552
317 Canada 13003 A 8552 8552
318 Canada 13004 G 8552 8552
319 Canada 13005 C 8552 8552
320 Canada 13006 T 8552 8552
321 Canada 13007 G 8552 8552
322 Canada 13008 C 8552 8552
323 Canada 13009 C 8552 8552
324 Canada 13010 A 8552 8552
325 Canada 13011 C T 8552 8546 Thr4249Ile
326 Canada 13012 A 8552 8552
327 Canada 13013 G 8552 8552
328 Canada 13014 T 8552 8552
329 Canada 13015 A 8552 8552
330 Canada 13016 C 8552 8552
331 Canada 13017 G 8552 8552
332 Canada 13018 T 8552 8552
333 Canada 13019 C T 8552 8549 Leu4252Leu
334 Canada 13020 T 8552 8552
335 Canada 13021 A 8552 8552
336 Canada 13022 C 8552 8552
337 Canada 13023 A 8552 8552
338 Canada 13024 A 8552 8552