National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                 1                    
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                   1                  
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cameroon 12686 A 18 18
1 Cameroon 12687 A 18 18
2 Cameroon 12688 T 18 18
3 Cameroon 12689 A 18 18
4 Cameroon 12690 A 18 18
5 Cameroon 12691 T 18 18
6 Cameroon 12692 G 18 18
7 Cameroon 12693 A 18 18
8 Cameroon 12694 G 18 18
9 Cameroon 12695 C 18 18
10 Cameroon 12696 T 18 18
11 Cameroon 12697 T 18 18
12 Cameroon 12698 A 18 18
13 Cameroon 12699 G 18 18
14 Cameroon 12700 T 18 18
15 Cameroon 12701 C 18 18
16 Cameroon 12702 C 18 18
17 Cameroon 12703 T 18 18
18 Cameroon 12704 G 18 18
19 Cameroon 12705 T 18 18
20 Cameroon 12706 T 18 18
21 Cameroon 12707 G 18 18
22 Cameroon 12708 C 18 18
23 Cameroon 12709 A 18 18
24 Cameroon 12710 C 18 18
25 Cameroon 12711 T 18 18
26 Cameroon 12712 A 18 18
27 Cameroon 12713 C 18 18
28 Cameroon 12714 G 18 18
29 Cameroon 12715 A 18 18
30 Cameroon 12716 C 18 18
31 Cameroon 12717 A 18 18
32 Cameroon 12718 G 18 18
33 Cameroon 12719 A 18 18
34 Cameroon 12720 T 18 18
35 Cameroon 12721 G 18 18
36 Cameroon 12722 T 18 18
37 Cameroon 12723 C 18 18
38 Cameroon 12724 T 18 18
39 Cameroon 12725 T 18 18
40 Cameroon 12726 G 19 19
41 Cameroon 12727 T 19 19
42 Cameroon 12728 G 19 19
43 Cameroon 12729 C 19 19
44 Cameroon 12730 T 19 19
45 Cameroon 12731 G 19 19
46 Cameroon 12732 C 19 19
47 Cameroon 12733 C 19 19
48 Cameroon 12734 G 19 19
49 Cameroon 12735 G 19 19
50 Cameroon 12736 T 19 19
51 Cameroon 12737 A 19 19
52 Cameroon 12738 C 19 19
53 Cameroon 12739 T 19 19
54 Cameroon 12740 A 19 19
55 Cameroon 12741 C 19 19
56 Cameroon 12742 A 19 19
57 Cameroon 12743 C 19 19
58 Cameroon 12744 A 19 19
59 Cameroon 12745 A 19 19
60 Cameroon 12746 A 19 19
61 Cameroon 12747 C 19 19
62 Cameroon 12748 T 19 19
63 Cameroon 12749 G 19 19
64 Cameroon 12750 C 19 19
65 Cameroon 12751 T 19 19
66 Cameroon 12752 T 19 19
67 Cameroon 12753 G 19 19
68 Cameroon 12754 C 19 19
69 Cameroon 12755 A 19 19
70 Cameroon 12756 C 19 19
71 Cameroon 12757 T 19 19
72 Cameroon 12758 G 19 19
73 Cameroon 12759 A 19 19
74 Cameroon 12760 T 19 19
75 Cameroon 12761 G 19 19
76 Cameroon 12762 A 19 19
77 Cameroon 12763 C 19 19
78 Cameroon 12764 A 19 19
79 Cameroon 12765 A 19 19
80 Cameroon 12766 T 19 19
81 Cameroon 12767 G 19 19
82 Cameroon 12768 C 19 19
83 Cameroon 12769 G 19 19
84 Cameroon 12770 T 19 19
85 Cameroon 12771 T 19 19
86 Cameroon 12772 A 19 19
87 Cameroon 12773 G 19 19
88 Cameroon 12774 C 19 19
89 Cameroon 12775 T 19 19
90 Cameroon 12776 T 19 19
91 Cameroon 12777 A 19 19
92 Cameroon 12778 C 19 19
93 Cameroon 12779 T 19 19
94 Cameroon 12780 A 19 19
95 Cameroon 12781 C 19 19
96 Cameroon 12782 A 19 19
97 Cameroon 12783 A 19 19
98 Cameroon 12784 C 19 19
99 Cameroon 12785 A 19 19
100 Cameroon 12786 C 19 19
101 Cameroon 12787 A 19 19
102 Cameroon 12788 A 19 19
103 Cameroon 12789 C 19 19
104 Cameroon 12790 A 19 19
105 Cameroon 12791 A 19 19
106 Cameroon 12792 A 19 19
107 Cameroon 12793 G 19 19
108 Cameroon 12794 G 19 19
109 Cameroon 12795 G 19 19
110 Cameroon 12796 A 19 19
111 Cameroon 12797 G 19 19
112 Cameroon 12798 G 19 19
113 Cameroon 12799 T 19 19
114 Cameroon 12800 A 19 19
115 Cameroon 12801 G 19 19
116 Cameroon 12802 G 19 19
117 Cameroon 12803 T 19 19
118 Cameroon 12804 T 19 19
119 Cameroon 12805 T 19 19
120 Cameroon 12806 G 19 19
121 Cameroon 12807 T 19 19
122 Cameroon 12808 A 19 19
123 Cameroon 12809 C 19 19
124 Cameroon 12810 T 19 19
125 Cameroon 12811 T 19 19
126 Cameroon 12812 G 19 19
127 Cameroon 12813 C 19 19
128 Cameroon 12814 A 19 19
129 Cameroon 12815 C 19 19
130 Cameroon 12816 T 19 19
131 Cameroon 12817 G 19 19
132 Cameroon 12818 T 19 19
133 Cameroon 12819 T 19 19
134 Cameroon 12820 A 20 20
135 Cameroon 12821 T 20 20
136 Cameroon 12822 C 20 20
137 Cameroon 12823 C 20 20
138 Cameroon 12824 G 20 20
139 Cameroon 12825 A 20 20
140 Cameroon 12826 T 20 20
141 Cameroon 12827 T 20 20
142 Cameroon 12828 T 20 20
143 Cameroon 12829 A 20 20
144 Cameroon 12830 C 20 20
145 Cameroon 12831 A 20 20
146 Cameroon 12832 G 20 20
147 Cameroon 12833 G 20 20
148 Cameroon 12834 A 20 20
149 Cameroon 12835 T 20 20
150 Cameroon 12836 T 20 20
151 Cameroon 12837 T 20 20
152 Cameroon 12838 G 20 20
153 Cameroon 12839 A 20 20
154 Cameroon 12840 A 20 20
155 Cameroon 12841 A 20 20
156 Cameroon 12842 T 20 20
157 Cameroon 12843 G 20 20
158 Cameroon 12844 G 20 20
159 Cameroon 12845 G 20 20
160 Cameroon 12846 C 20 20
161 Cameroon 12847 T 20 20
162 Cameroon 12848 A 20 20
163 Cameroon 12849 G 20 20
164 Cameroon 12850 A 20 20
165 Cameroon 12851 T 20 20
166 Cameroon 12852 T 20 20
167 Cameroon 12853 C 20 20
168 Cameroon 12854 C 20 20
169 Cameroon 12855 C 20 20
170 Cameroon 12856 T 20 20
171 Cameroon 12857 A 20 20
172 Cameroon 12858 A 20 20
173 Cameroon 12859 G 20 20
174 Cameroon 12860 A 20 20
175 Cameroon 12861 G 20 20
176 Cameroon 12862 T 20 20
177 Cameroon 12863 G 20 20
178 Cameroon 12864 A 20 20
179 Cameroon 12865 T 20 20
180 Cameroon 12866 G 20 20
181 Cameroon 12867 G 20 20
182 Cameroon 12868 A 20 20
183 Cameroon 12869 A 20 20
184 Cameroon 12870 C 20 20
185 Cameroon 12871 T 20 20
186 Cameroon 12872 G 20 20
187 Cameroon 12873 G 20 20
188 Cameroon 12874 T 20 20
189 Cameroon 12875 A 20 20
190 Cameroon 12876 C 20 20
191 Cameroon 12877 T 20 20
192 Cameroon 12878 A 20 20
193 Cameroon 12879 T 20 20
194 Cameroon 12880 C 20 20
195 Cameroon 12881 T 20 20
196 Cameroon 12882 A 20 20
197 Cameroon 12883 T 20 20
198 Cameroon 12884 A 20 20
199 Cameroon 12885 C 20 20
200 Cameroon 12886 A 20 20
201 Cameroon 12887 G 20 20
202 Cameroon 12888 A 20 20
203 Cameroon 12889 A 20 20
204 Cameroon 12890 C 20 20
205 Cameroon 12891 T 20 20
206 Cameroon 12892 G 20 20
207 Cameroon 12893 G 20 20
208 Cameroon 12894 A 20 20
209 Cameroon 12895 A 20 20
210 Cameroon 12896 C 20 20
211 Cameroon 12897 C 20 20
212 Cameroon 12898 A 20 20
213 Cameroon 12899 C 20 20
214 Cameroon 12900 C 20 20
215 Cameroon 12901 T 20 20
216 Cameroon 12902 T 20 20
217 Cameroon 12903 G 20 20
218 Cameroon 12904 T 20 20
219 Cameroon 12905 A 20 20
220 Cameroon 12906 G 20 20
221 Cameroon 12907 G 20 20
222 Cameroon 12908 T 20 19
223 Cameroon 12909 T 20 19
224 Cameroon 12910 T 20 19
225 Cameroon 12911 G 20 19
226 Cameroon 12912 T 20 19
227 Cameroon 12913 T 20 19
228 Cameroon 12914 A 20 19
229 Cameroon 12915 C 20 19
230 Cameroon 12916 A 20 19
231 Cameroon 12917 G 20 19
232 Cameroon 12918 A 20 19
233 Cameroon 12919 C 20 19
234 Cameroon 12920 A 20 19
235 Cameroon 12921 C 20 19
236 Cameroon 12922 A 20 19
237 Cameroon 12923 C 20 20
238 Cameroon 12924 C 20 20
239 Cameroon 12925 T 20 20
240 Cameroon 12926 A 20 20
241 Cameroon 12927 A 20 20
242 Cameroon 12928 A 20 20
243 Cameroon 12929 G 20 20
244 Cameroon 12930 G 20 20
245 Cameroon 12931 T 20 20
246 Cameroon 12932 C 20 20
247 Cameroon 12933 C 20 20
248 Cameroon 12934 T 20 20
249 Cameroon 12935 A 20 20
250 Cameroon 12936 A 20 20
251 Cameroon 12937 A 20 20
252 Cameroon 12938 G A 21 20 Val4225Met
253 Cameroon 12939 T 21 21
254 Cameroon 12940 G 21 21
255 Cameroon 12941 A 21 21
256 Cameroon 12942 A 21 21
257 Cameroon 12943 G 21 21
258 Cameroon 12944 T 21 21
259 Cameroon 12945 A 21 21
260 Cameroon 12946 T 21 21
261 Cameroon 12947 T 21 21
262 Cameroon 12948 T 21 21
263 Cameroon 12949 A 21 21
264 Cameroon 12950 T 21 21
265 Cameroon 12951 A 21 21
266 Cameroon 12952 C 21 21
267 Cameroon 12953 T 20 20
268 Cameroon 12954 T 20 20
269 Cameroon 12955 T 20 20
270 Cameroon 12956 A 20 20
271 Cameroon 12957 T 20 20
272 Cameroon 12958 T 20 20
273 Cameroon 12959 A 20 20
274 Cameroon 12960 A 20 20
275 Cameroon 12961 A 20 20
276 Cameroon 12962 G 20 20
277 Cameroon 12963 G 20 20
278 Cameroon 12964 A 20 20
279 Cameroon 12965 T 20 20
280 Cameroon 12966 T 20 20
281 Cameroon 12967 A 20 20
282 Cameroon 12968 A 20 20
283 Cameroon 12969 A 20 20
284 Cameroon 12970 C 20 20
285 Cameroon 12971 A 20 20
286 Cameroon 12972 A 20 20
287 Cameroon 12973 C 20 20
288 Cameroon 12974 C 20 20
289 Cameroon 12975 T 20 20
290 Cameroon 12976 A 20 20
291 Cameroon 12977 A 20 20
292 Cameroon 12978 A 20 20
293 Cameroon 12979 T 20 20
294 Cameroon 12980 A 20 20
295 Cameroon 12981 G 20 20
296 Cameroon 12982 A 20 20
297 Cameroon 12983 G 20 20
298 Cameroon 12984 G 20 20
299 Cameroon 12985 T 20 20
300 Cameroon 12986 A 20 20
301 Cameroon 12987 T 20 20
302 Cameroon 12988 G 20 20
303 Cameroon 12989 G 20 20
304 Cameroon 12990 T 20 20
305 Cameroon 12991 A 20 20
306 Cameroon 12992 C 20 20
307 Cameroon 12993 T 20 20
308 Cameroon 12994 T 20 20
309 Cameroon 12995 G 20 20
310 Cameroon 12996 G 20 20
311 Cameroon 12997 T 20 20
312 Cameroon 12998 A 20 20
313 Cameroon 12999 G 20 20
314 Cameroon 13000 T 20 20
315 Cameroon 13001 T 20 20
316 Cameroon 13002 T 20 20
317 Cameroon 13003 A 20 20
318 Cameroon 13004 G 20 20
319 Cameroon 13005 C 20 20
320 Cameroon 13006 T 20 20
321 Cameroon 13007 G 20 20
322 Cameroon 13008 C 20 20
323 Cameroon 13009 C 20 20
324 Cameroon 13010 A 20 20
325 Cameroon 13011 C 20 20
326 Cameroon 13012 A 20 20
327 Cameroon 13013 G 20 20
328 Cameroon 13014 T 20 20
329 Cameroon 13015 A 20 20
330 Cameroon 13016 C 20 20
331 Cameroon 13017 G 20 20
332 Cameroon 13018 T 20 20
333 Cameroon 13019 C T 20 18 Leu4252Leu
334 Cameroon 13020 T 20 20
335 Cameroon 13021 A 20 20
336 Cameroon 13022 C 20 20
337 Cameroon 13023 A 20 20
338 Cameroon 13024 A 20 20