National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 2                                    
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                 3                    
M   6                                      
N   21                     1                
P   18                       1              
Q   12                                      
R   18                           1          
S   15                             1        
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Cambodia 12686 A 4 4
1 Cambodia 12687 A 4 4
2 Cambodia 12688 T 4 4
3 Cambodia 12689 A 4 4
4 Cambodia 12690 A 4 4
5 Cambodia 12691 T 4 4
6 Cambodia 12692 G 4 4
7 Cambodia 12693 A 4 4
8 Cambodia 12694 G 4 4
9 Cambodia 12695 C 4 4
10 Cambodia 12696 T 4 4
11 Cambodia 12697 T 4 4
12 Cambodia 12698 A 4 4
13 Cambodia 12699 G 4 4
14 Cambodia 12700 T 4 4
15 Cambodia 12701 C 4 4
16 Cambodia 12702 C 4 4
17 Cambodia 12703 T 4 4
18 Cambodia 12704 G 4 4
19 Cambodia 12705 T 4 4
20 Cambodia 12706 T 4 4
21 Cambodia 12707 G 4 4
22 Cambodia 12708 C 4 4
23 Cambodia 12709 A 4 4
24 Cambodia 12710 C 4 4
25 Cambodia 12711 T 4 4
26 Cambodia 12712 A 4 4
27 Cambodia 12713 C 4 4
28 Cambodia 12714 G 4 4
29 Cambodia 12715 A 4 4
30 Cambodia 12716 C 4 4
31 Cambodia 12717 A 4 4
32 Cambodia 12718 G 4 4
33 Cambodia 12719 A 4 4
34 Cambodia 12720 T 4 4
35 Cambodia 12721 G 4 4
36 Cambodia 12722 T 4 4
37 Cambodia 12723 C 4 4
38 Cambodia 12724 T 4 4
39 Cambodia 12725 T 4 4
40 Cambodia 12726 G 4 4
41 Cambodia 12727 T 4 4
42 Cambodia 12728 G 4 4
43 Cambodia 12729 C 4 4
44 Cambodia 12730 T 4 4
45 Cambodia 12731 G 4 4
46 Cambodia 12732 C 4 4
47 Cambodia 12733 C 4 4
48 Cambodia 12734 G 4 4
49 Cambodia 12735 G 4 4
50 Cambodia 12736 T 4 4
51 Cambodia 12737 A 4 4
52 Cambodia 12738 C 4 4
53 Cambodia 12739 T 4 4
54 Cambodia 12740 A 4 4
55 Cambodia 12741 C 4 4
56 Cambodia 12742 A 4 4
57 Cambodia 12743 C 4 4
58 Cambodia 12744 A 4 4
59 Cambodia 12745 A 4 4
60 Cambodia 12746 A 4 4
61 Cambodia 12747 C 4 4
62 Cambodia 12748 T 4 4
63 Cambodia 12749 G 4 4
64 Cambodia 12750 C 4 4
65 Cambodia 12751 T 4 4
66 Cambodia 12752 T 4 4
67 Cambodia 12753 G 4 4
68 Cambodia 12754 C 4 4
69 Cambodia 12755 A 4 4
70 Cambodia 12756 C 4 4
71 Cambodia 12757 T 4 4
72 Cambodia 12758 G 4 4
73 Cambodia 12759 A 4 4
74 Cambodia 12760 T 4 4
75 Cambodia 12761 G 4 4
76 Cambodia 12762 A 4 4
77 Cambodia 12763 C 4 4
78 Cambodia 12764 A 4 4
79 Cambodia 12765 A 4 4
80 Cambodia 12766 T 4 4
81 Cambodia 12767 G 4 4
82 Cambodia 12768 C 4 4
83 Cambodia 12769 G 4 4
84 Cambodia 12770 T 4 4
85 Cambodia 12771 T 4 4
86 Cambodia 12772 A 4 4
87 Cambodia 12773 G 4 4
88 Cambodia 12774 C 4 4
89 Cambodia 12775 T C 4 2 Ala4170Ala
90 Cambodia 12776 T 4 4
91 Cambodia 12777 A 4 4
92 Cambodia 12778 C 4 4
93 Cambodia 12779 T 4 4
94 Cambodia 12780 A 4 4
95 Cambodia 12781 C 4 4
96 Cambodia 12782 A 4 4
97 Cambodia 12783 A 4 4
98 Cambodia 12784 C 4 4
99 Cambodia 12785 A 4 4
100 Cambodia 12786 C 4 4
101 Cambodia 12787 A 4 4
102 Cambodia 12788 A 4 4
103 Cambodia 12789 C 4 4
104 Cambodia 12790 A 4 4
105 Cambodia 12791 A 4 4
106 Cambodia 12792 A 4 4
107 Cambodia 12793 G 4 4
108 Cambodia 12794 G 4 4
109 Cambodia 12795 G 4 4
110 Cambodia 12796 A 4 4
111 Cambodia 12797 G 4 4
112 Cambodia 12798 G 4 4
113 Cambodia 12799 T 4 4
114 Cambodia 12800 A 4 4
115 Cambodia 12801 G 4 4
116 Cambodia 12802 G 4 4
117 Cambodia 12803 T 4 4
118 Cambodia 12804 T 4 4
119 Cambodia 12805 T 4 4
120 Cambodia 12806 G 4 4
121 Cambodia 12807 T 4 4
122 Cambodia 12808 A 4 4
123 Cambodia 12809 C 4 4
124 Cambodia 12810 T 4 4
125 Cambodia 12811 T A 4 2 Leu4182Leu
126 Cambodia 12812 G 4 4
127 Cambodia 12813 C 4 4
128 Cambodia 12814 A 4 4
129 Cambodia 12815 C 4 4
130 Cambodia 12816 T 4 4
131 Cambodia 12817 G 4 4
132 Cambodia 12818 T 4 4
133 Cambodia 12819 T 4 4
134 Cambodia 12820 A 4 4
135 Cambodia 12821 T 4 4
136 Cambodia 12822 C 4 4
137 Cambodia 12823 C 4 4
138 Cambodia 12824 G 4 4
139 Cambodia 12825 A 4 4
140 Cambodia 12826 T 4 4
141 Cambodia 12827 T 4 4
142 Cambodia 12828 T 4 4
143 Cambodia 12829 A 4 4
144 Cambodia 12830 C 4 4
145 Cambodia 12831 A 4 4
146 Cambodia 12832 G 4 4
147 Cambodia 12833 G 4 4
148 Cambodia 12834 A 4 4
149 Cambodia 12835 T 4 4
150 Cambodia 12836 T 4 4
151 Cambodia 12837 T 4 4
152 Cambodia 12838 G 4 4
153 Cambodia 12839 A 4 4
154 Cambodia 12840 A 4 4
155 Cambodia 12841 A 4 4
156 Cambodia 12842 T 4 4
157 Cambodia 12843 G 4 4
158 Cambodia 12844 G 4 4
159 Cambodia 12845 G 4 4
160 Cambodia 12846 C 4 4
161 Cambodia 12847 T 4 4
162 Cambodia 12848 A 4 4
163 Cambodia 12849 G 4 4
164 Cambodia 12850 A 4 4
165 Cambodia 12851 T 4 4
166 Cambodia 12852 T 4 4
167 Cambodia 12853 C 4 4
168 Cambodia 12854 C 4 4
169 Cambodia 12855 C 4 4
170 Cambodia 12856 T 4 4
171 Cambodia 12857 A 4 4
172 Cambodia 12858 A 4 4
173 Cambodia 12859 G 4 4
174 Cambodia 12860 A 4 4
175 Cambodia 12861 G 4 4
176 Cambodia 12862 T 4 4
177 Cambodia 12863 G 4 4
178 Cambodia 12864 A 4 4
179 Cambodia 12865 T 4 4
180 Cambodia 12866 G 4 4
181 Cambodia 12867 G 4 4
182 Cambodia 12868 A 4 4
183 Cambodia 12869 A 4 4
184 Cambodia 12870 C 4 4
185 Cambodia 12871 T 4 4
186 Cambodia 12872 G 4 4
187 Cambodia 12873 G 4 4
188 Cambodia 12874 T 4 4
189 Cambodia 12875 A 4 4
190 Cambodia 12876 C 4 4
191 Cambodia 12877 T 4 4
192 Cambodia 12878 A 4 4
193 Cambodia 12879 T 4 4
194 Cambodia 12880 C 4 4
195 Cambodia 12881 T 4 4
196 Cambodia 12882 A 4 4
197 Cambodia 12883 T 4 4
198 Cambodia 12884 A 4 4
199 Cambodia 12885 C 4 4
200 Cambodia 12886 A 4 4
201 Cambodia 12887 G 4 4
202 Cambodia 12888 A 4 4
203 Cambodia 12889 A 4 4
204 Cambodia 12890 C 4 4
205 Cambodia 12891 T 4 4
206 Cambodia 12892 G 4 4
207 Cambodia 12893 G 4 4
208 Cambodia 12894 A 4 4
209 Cambodia 12895 A 4 4
210 Cambodia 12896 C 4 4
211 Cambodia 12897 C 4 4
212 Cambodia 12898 A G 4 2 Pro4211Pro
213 Cambodia 12899 C 4 4
214 Cambodia 12900 C 4 4
215 Cambodia 12901 T 4 4
216 Cambodia 12902 T 4 4
217 Cambodia 12903 G 4 4
218 Cambodia 12904 T 4 4
219 Cambodia 12905 A 4 4
220 Cambodia 12906 G 4 4
221 Cambodia 12907 G 4 4
222 Cambodia 12908 T 4 4
223 Cambodia 12909 T 4 4
224 Cambodia 12910 T 4 4
225 Cambodia 12911 G 4 4
226 Cambodia 12912 T 4 4
227 Cambodia 12913 T 4 4
228 Cambodia 12914 A 4 4
229 Cambodia 12915 C 4 4
230 Cambodia 12916 A 4 4
231 Cambodia 12917 G 4 4
232 Cambodia 12918 A 4 4
233 Cambodia 12919 C 4 4
234 Cambodia 12920 A 4 4
235 Cambodia 12921 C 4 4
236 Cambodia 12922 A 4 4
237 Cambodia 12923 C 4 4
238 Cambodia 12924 C 4 4
239 Cambodia 12925 T 4 4
240 Cambodia 12926 A 4 4
241 Cambodia 12927 A 4 4
242 Cambodia 12928 A 4 4
243 Cambodia 12929 G 4 4
244 Cambodia 12930 G 4 4
245 Cambodia 12931 T 4 4
246 Cambodia 12932 C 4 4
247 Cambodia 12933 C 4 4
248 Cambodia 12934 T 4 4
249 Cambodia 12935 A 4 4
250 Cambodia 12936 A 4 4
251 Cambodia 12937 A 4 4
252 Cambodia 12938 G 4 4
253 Cambodia 12939 T 4 4
254 Cambodia 12940 G 4 4
255 Cambodia 12941 A 4 4
256 Cambodia 12942 A 4 4
257 Cambodia 12943 G 4 4
258 Cambodia 12944 T 4 4
259 Cambodia 12945 A 4 4
260 Cambodia 12946 T 4 4
261 Cambodia 12947 T 4 4
262 Cambodia 12948 T 4 4
263 Cambodia 12949 A 4 4
264 Cambodia 12950 T 4 4
265 Cambodia 12951 A 4 4
266 Cambodia 12952 C 4 4
267 Cambodia 12953 T 4 4
268 Cambodia 12954 T 4 4
269 Cambodia 12955 T 4 4
270 Cambodia 12956 A 4 4
271 Cambodia 12957 T 4 4
272 Cambodia 12958 T 4 4
273 Cambodia 12959 A 4 4
274 Cambodia 12960 A 4 4
275 Cambodia 12961 A 4 4
276 Cambodia 12962 G 4 4
277 Cambodia 12963 G 4 4
278 Cambodia 12964 A 4 4
279 Cambodia 12965 T 4 4
280 Cambodia 12966 T 4 4
281 Cambodia 12967 A G 4 2 Leu4234Leu
282 Cambodia 12968 A 4 4
283 Cambodia 12969 A 4 4
284 Cambodia 12970 C T 4 2 Asn4235Asn
285 Cambodia 12971 A 4 4
286 Cambodia 12972 A 4 4
287 Cambodia 12973 C 4 4
288 Cambodia 12974 C 4 4
289 Cambodia 12975 T 4 4
290 Cambodia 12976 A 4 4
291 Cambodia 12977 A 4 4
292 Cambodia 12978 A 4 4
293 Cambodia 12979 T 4 4
294 Cambodia 12980 A 4 4
295 Cambodia 12981 G 4 4
296 Cambodia 12982 A 4 4
297 Cambodia 12983 G 4 4
298 Cambodia 12984 G 4 4
299 Cambodia 12985 T 4 4
300 Cambodia 12986 A 4 4
301 Cambodia 12987 T 4 4
302 Cambodia 12988 G 4 4
303 Cambodia 12989 G 4 4
304 Cambodia 12990 T 4 4
305 Cambodia 12991 A 4 4
306 Cambodia 12992 C 4 4
307 Cambodia 12993 T 4 4
308 Cambodia 12994 T 4 4
309 Cambodia 12995 G 4 4
310 Cambodia 12996 G 4 4
311 Cambodia 12997 T 4 4
312 Cambodia 12998 A 4 4
313 Cambodia 12999 G 4 4
314 Cambodia 13000 T C 4 2 Ser4245Ser
315 Cambodia 13001 T 4 4
316 Cambodia 13002 T 4 4
317 Cambodia 13003 A 4 4
318 Cambodia 13004 G 4 4
319 Cambodia 13005 C 4 4
320 Cambodia 13006 T 4 4
321 Cambodia 13007 G 4 4
322 Cambodia 13008 C 4 4
323 Cambodia 13009 C T 4 2 Ala4248Ala
324 Cambodia 13010 A 4 4
325 Cambodia 13011 C 4 4
326 Cambodia 13012 A 4 4
327 Cambodia 13013 G 4 4
328 Cambodia 13014 T 4 4
329 Cambodia 13015 A 4 4
330 Cambodia 13016 C 4 4
331 Cambodia 13017 G 4 4
332 Cambodia 13018 T C 4 2 Arg4251Arg
333 Cambodia 13019 C T 4 2 Leu4252Leu
334 Cambodia 13020 T 4 4
335 Cambodia 13021 A 4 4
336 Cambodia 13022 C 4 4
337 Cambodia 13023 A 4 4
338 Cambodia 13024 A 4 4