National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bulgaria 12686 A 15 15
1 Bulgaria 12687 A 15 15
2 Bulgaria 12688 T 15 15
3 Bulgaria 12689 A 15 15
4 Bulgaria 12690 A 15 15
5 Bulgaria 12691 T 15 15
6 Bulgaria 12692 G 15 15
7 Bulgaria 12693 A 15 15
8 Bulgaria 12694 G 15 15
9 Bulgaria 12695 C 15 15
10 Bulgaria 12696 T 15 15
11 Bulgaria 12697 T 15 15
12 Bulgaria 12698 A 15 15
13 Bulgaria 12699 G 15 15
14 Bulgaria 12700 T 15 15
15 Bulgaria 12701 C 15 15
16 Bulgaria 12702 C 15 15
17 Bulgaria 12703 T 15 15
18 Bulgaria 12704 G 15 15
19 Bulgaria 12705 T 15 15
20 Bulgaria 12706 T 15 15
21 Bulgaria 12707 G 15 15
22 Bulgaria 12708 C 15 15
23 Bulgaria 12709 A 15 15
24 Bulgaria 12710 C 15 15
25 Bulgaria 12711 T 15 15
26 Bulgaria 12712 A 15 15
27 Bulgaria 12713 C 15 15
28 Bulgaria 12714 G 15 15
29 Bulgaria 12715 A 15 15
30 Bulgaria 12716 C 15 15
31 Bulgaria 12717 A 15 15
32 Bulgaria 12718 G 15 15
33 Bulgaria 12719 A 15 15
34 Bulgaria 12720 T 15 15
35 Bulgaria 12721 G 15 15
36 Bulgaria 12722 T 15 15
37 Bulgaria 12723 C 15 15
38 Bulgaria 12724 T 15 15
39 Bulgaria 12725 T 15 15
40 Bulgaria 12726 G 15 15
41 Bulgaria 12727 T 15 15
42 Bulgaria 12728 G 15 15
43 Bulgaria 12729 C 15 15
44 Bulgaria 12730 T 15 15
45 Bulgaria 12731 G 15 15
46 Bulgaria 12732 C 15 15
47 Bulgaria 12733 C 15 15
48 Bulgaria 12734 G 15 15
49 Bulgaria 12735 G 15 15
50 Bulgaria 12736 T 15 15
51 Bulgaria 12737 A 15 15
52 Bulgaria 12738 C 15 15
53 Bulgaria 12739 T 15 15
54 Bulgaria 12740 A 15 15
55 Bulgaria 12741 C 15 15
56 Bulgaria 12742 A 15 15
57 Bulgaria 12743 C 15 15
58 Bulgaria 12744 A 15 15
59 Bulgaria 12745 A 15 15
60 Bulgaria 12746 A 15 15
61 Bulgaria 12747 C 15 15
62 Bulgaria 12748 T 15 15
63 Bulgaria 12749 G 15 15
64 Bulgaria 12750 C 15 15
65 Bulgaria 12751 T 15 15
66 Bulgaria 12752 T 15 15
67 Bulgaria 12753 G 15 15
68 Bulgaria 12754 C 15 15
69 Bulgaria 12755 A 15 15
70 Bulgaria 12756 C 15 15
71 Bulgaria 12757 T 15 15
72 Bulgaria 12758 G 15 15
73 Bulgaria 12759 A 15 15
74 Bulgaria 12760 T 15 15
75 Bulgaria 12761 G 15 15
76 Bulgaria 12762 A 15 15
77 Bulgaria 12763 C 15 15
78 Bulgaria 12764 A 15 15
79 Bulgaria 12765 A 15 15
80 Bulgaria 12766 T 15 15
81 Bulgaria 12767 G 15 15
82 Bulgaria 12768 C 15 15
83 Bulgaria 12769 G 15 15
84 Bulgaria 12770 T 15 15
85 Bulgaria 12771 T 15 15
86 Bulgaria 12772 A 15 15
87 Bulgaria 12773 G 15 15
88 Bulgaria 12774 C 15 15
89 Bulgaria 12775 T 15 15
90 Bulgaria 12776 T 15 15
91 Bulgaria 12777 A 15 15
92 Bulgaria 12778 C 15 15
93 Bulgaria 12779 T 15 15
94 Bulgaria 12780 A 15 15
95 Bulgaria 12781 C 15 15
96 Bulgaria 12782 A 15 15
97 Bulgaria 12783 A 15 15
98 Bulgaria 12784 C 15 15
99 Bulgaria 12785 A 15 15
100 Bulgaria 12786 C 15 15
101 Bulgaria 12787 A 15 15
102 Bulgaria 12788 A 15 15
103 Bulgaria 12789 C 15 15
104 Bulgaria 12790 A 15 15
105 Bulgaria 12791 A 15 15
106 Bulgaria 12792 A 15 15
107 Bulgaria 12793 G 15 15
108 Bulgaria 12794 G 15 15
109 Bulgaria 12795 G 15 15
110 Bulgaria 12796 A 15 15
111 Bulgaria 12797 G 15 15
112 Bulgaria 12798 G 15 15
113 Bulgaria 12799 T 15 15
114 Bulgaria 12800 A 15 15
115 Bulgaria 12801 G 15 15
116 Bulgaria 12802 G 15 15
117 Bulgaria 12803 T 15 15
118 Bulgaria 12804 T 15 15
119 Bulgaria 12805 T 15 15
120 Bulgaria 12806 G 15 15
121 Bulgaria 12807 T 15 15
122 Bulgaria 12808 A 15 15
123 Bulgaria 12809 C 15 15
124 Bulgaria 12810 T 15 15
125 Bulgaria 12811 T 15 15
126 Bulgaria 12812 G 15 15
127 Bulgaria 12813 C 15 15
128 Bulgaria 12814 A 15 15
129 Bulgaria 12815 C 15 15
130 Bulgaria 12816 T 15 15
131 Bulgaria 12817 G 15 15
132 Bulgaria 12818 T 15 15
133 Bulgaria 12819 T 15 15
134 Bulgaria 12820 A 15 15
135 Bulgaria 12821 T 15 15
136 Bulgaria 12822 C 15 15
137 Bulgaria 12823 C 15 15
138 Bulgaria 12824 G 15 15
139 Bulgaria 12825 A 15 15
140 Bulgaria 12826 T 15 15
141 Bulgaria 12827 T 15 15
142 Bulgaria 12828 T 15 15
143 Bulgaria 12829 A 15 15
144 Bulgaria 12830 C 15 15
145 Bulgaria 12831 A 15 15
146 Bulgaria 12832 G 15 15
147 Bulgaria 12833 G 15 15
148 Bulgaria 12834 A 15 15
149 Bulgaria 12835 T 15 15
150 Bulgaria 12836 T 15 15
151 Bulgaria 12837 T 15 15
152 Bulgaria 12838 G 15 15
153 Bulgaria 12839 A 15 15
154 Bulgaria 12840 A 15 15
155 Bulgaria 12841 A 15 15
156 Bulgaria 12842 T 15 15
157 Bulgaria 12843 G 15 15
158 Bulgaria 12844 G 15 15
159 Bulgaria 12845 G 15 15
160 Bulgaria 12846 C 15 15
161 Bulgaria 12847 T 15 15
162 Bulgaria 12848 A 15 15
163 Bulgaria 12849 G 15 15
164 Bulgaria 12850 A 15 15
165 Bulgaria 12851 T 15 15
166 Bulgaria 12852 T 15 15
167 Bulgaria 12853 C 15 15
168 Bulgaria 12854 C 15 15
169 Bulgaria 12855 C 15 15
170 Bulgaria 12856 T 15 15
171 Bulgaria 12857 A 15 15
172 Bulgaria 12858 A 15 15
173 Bulgaria 12859 G 15 15
174 Bulgaria 12860 A 15 15
175 Bulgaria 12861 G 15 15
176 Bulgaria 12862 T 15 15
177 Bulgaria 12863 G 15 15
178 Bulgaria 12864 A 15 15
179 Bulgaria 12865 T 15 15
180 Bulgaria 12866 G 15 15
181 Bulgaria 12867 G 15 15
182 Bulgaria 12868 A 15 15
183 Bulgaria 12869 A 15 15
184 Bulgaria 12870 C 15 15
185 Bulgaria 12871 T 15 15
186 Bulgaria 12872 G 15 15
187 Bulgaria 12873 G 15 15
188 Bulgaria 12874 T 15 15
189 Bulgaria 12875 A 15 15
190 Bulgaria 12876 C 15 15
191 Bulgaria 12877 T 15 15
192 Bulgaria 12878 A 15 15
193 Bulgaria 12879 T 15 15
194 Bulgaria 12880 C 15 15
195 Bulgaria 12881 T 15 15
196 Bulgaria 12882 A 15 15
197 Bulgaria 12883 T 15 15
198 Bulgaria 12884 A 15 15
199 Bulgaria 12885 C 15 15
200 Bulgaria 12886 A 15 15
201 Bulgaria 12887 G 15 15
202 Bulgaria 12888 A 15 15
203 Bulgaria 12889 A 15 15
204 Bulgaria 12890 C 15 15
205 Bulgaria 12891 T 15 15
206 Bulgaria 12892 G 15 15
207 Bulgaria 12893 G 15 15
208 Bulgaria 12894 A 15 15
209 Bulgaria 12895 A 15 15
210 Bulgaria 12896 C 15 15
211 Bulgaria 12897 C 15 15
212 Bulgaria 12898 A 15 15
213 Bulgaria 12899 C 15 15
214 Bulgaria 12900 C 15 15
215 Bulgaria 12901 T 15 15
216 Bulgaria 12902 T 15 15
217 Bulgaria 12903 G 15 15
218 Bulgaria 12904 T 15 15
219 Bulgaria 12905 A 15 15
220 Bulgaria 12906 G 15 15
221 Bulgaria 12907 G 15 15
222 Bulgaria 12908 T 15 15
223 Bulgaria 12909 T 15 15
224 Bulgaria 12910 T 15 15
225 Bulgaria 12911 G 15 15
226 Bulgaria 12912 T 15 15
227 Bulgaria 12913 T 15 15
228 Bulgaria 12914 A 15 15
229 Bulgaria 12915 C 15 15
230 Bulgaria 12916 A 15 15
231 Bulgaria 12917 G 15 15
232 Bulgaria 12918 A 15 15
233 Bulgaria 12919 C 15 15
234 Bulgaria 12920 A 15 15
235 Bulgaria 12921 C 15 15
236 Bulgaria 12922 A 15 15
237 Bulgaria 12923 C 15 15
238 Bulgaria 12924 C 15 15
239 Bulgaria 12925 T 15 15
240 Bulgaria 12926 A 15 15
241 Bulgaria 12927 A 15 15
242 Bulgaria 12928 A 15 15
243 Bulgaria 12929 G 15 15
244 Bulgaria 12930 G 15 15
245 Bulgaria 12931 T 15 15
246 Bulgaria 12932 C 15 15
247 Bulgaria 12933 C 15 15
248 Bulgaria 12934 T 15 15
249 Bulgaria 12935 A 15 15
250 Bulgaria 12936 A 15 15
251 Bulgaria 12937 A 15 15
252 Bulgaria 12938 G 15 15
253 Bulgaria 12939 T 15 15
254 Bulgaria 12940 G 15 15
255 Bulgaria 12941 A 15 15
256 Bulgaria 12942 A 15 15
257 Bulgaria 12943 G 15 15
258 Bulgaria 12944 T 15 15
259 Bulgaria 12945 A 15 15
260 Bulgaria 12946 T 15 15
261 Bulgaria 12947 T 15 15
262 Bulgaria 12948 T 15 15
263 Bulgaria 12949 A 15 15
264 Bulgaria 12950 T 15 15
265 Bulgaria 12951 A 15 15
266 Bulgaria 12952 C 15 15
267 Bulgaria 12953 T 15 15
268 Bulgaria 12954 T 15 15
269 Bulgaria 12955 T 15 15
270 Bulgaria 12956 A 15 15
271 Bulgaria 12957 T 15 15
272 Bulgaria 12958 T 15 15
273 Bulgaria 12959 A 15 15
274 Bulgaria 12960 A 15 15
275 Bulgaria 12961 A 15 15
276 Bulgaria 12962 G 15 15
277 Bulgaria 12963 G 15 15
278 Bulgaria 12964 A 15 15
279 Bulgaria 12965 T 15 15
280 Bulgaria 12966 T 15 15
281 Bulgaria 12967 A 15 15
282 Bulgaria 12968 A 15 15
283 Bulgaria 12969 A 15 15
284 Bulgaria 12970 C 15 15
285 Bulgaria 12971 A 15 15
286 Bulgaria 12972 A 15 15
287 Bulgaria 12973 C 15 15
288 Bulgaria 12974 C 15 15
289 Bulgaria 12975 T 15 15
290 Bulgaria 12976 A 15 15
291 Bulgaria 12977 A 15 15
292 Bulgaria 12978 A 15 15
293 Bulgaria 12979 T 15 15
294 Bulgaria 12980 A 15 15
295 Bulgaria 12981 G 15 15
296 Bulgaria 12982 A 15 15
297 Bulgaria 12983 G 15 15
298 Bulgaria 12984 G 15 15
299 Bulgaria 12985 T 15 15
300 Bulgaria 12986 A 15 15
301 Bulgaria 12987 T 15 15
302 Bulgaria 12988 G 15 15
303 Bulgaria 12989 G 15 15
304 Bulgaria 12990 T 15 15
305 Bulgaria 12991 A 15 15
306 Bulgaria 12992 C 15 15
307 Bulgaria 12993 T 15 15
308 Bulgaria 12994 T 15 15
309 Bulgaria 12995 G 15 15
310 Bulgaria 12996 G 15 15
311 Bulgaria 12997 T 15 15
312 Bulgaria 12998 A 15 15
313 Bulgaria 12999 G 15 15
314 Bulgaria 13000 T 15 15
315 Bulgaria 13001 T 15 15
316 Bulgaria 13002 T 15 15
317 Bulgaria 13003 A 15 15
318 Bulgaria 13004 G 15 15
319 Bulgaria 13005 C 15 15
320 Bulgaria 13006 T 15 15
321 Bulgaria 13007 G 15 15
322 Bulgaria 13008 C 15 15
323 Bulgaria 13009 C 15 15
324 Bulgaria 13010 A 15 15
325 Bulgaria 13011 C 15 15
326 Bulgaria 13012 A 15 15
327 Bulgaria 13013 G 15 15
328 Bulgaria 13014 T 15 15
329 Bulgaria 13015 A 15 15
330 Bulgaria 13016 C 15 15
331 Bulgaria 13017 G 15 15
332 Bulgaria 13018 T 15 15
333 Bulgaria 13019 C 15 15
334 Bulgaria 13020 T 15 15
335 Bulgaria 13021 A 15 15
336 Bulgaria 13022 C 15 15
337 Bulgaria 13023 A 15 15
338 Bulgaria 13024 A 15 15