National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Brunei 12686 A 5 5
1 Brunei 12687 A 5 5
2 Brunei 12688 T 5 5
3 Brunei 12689 A 5 5
4 Brunei 12690 A 5 5
5 Brunei 12691 T 5 5
6 Brunei 12692 G 5 5
7 Brunei 12693 A 5 5
8 Brunei 12694 G 5 5
9 Brunei 12695 C 5 5
10 Brunei 12696 T 5 5
11 Brunei 12697 T 5 5
12 Brunei 12698 A 5 5
13 Brunei 12699 G 5 5
14 Brunei 12700 T 5 5
15 Brunei 12701 C 5 5
16 Brunei 12702 C 5 5
17 Brunei 12703 T 5 5
18 Brunei 12704 G 5 5
19 Brunei 12705 T 5 5
20 Brunei 12706 T 5 5
21 Brunei 12707 G 5 5
22 Brunei 12708 C 5 5
23 Brunei 12709 A 5 5
24 Brunei 12710 C 5 5
25 Brunei 12711 T 5 5
26 Brunei 12712 A 5 5
27 Brunei 12713 C 5 5
28 Brunei 12714 G 5 5
29 Brunei 12715 A 5 5
30 Brunei 12716 C 5 5
31 Brunei 12717 A 5 5
32 Brunei 12718 G 5 5
33 Brunei 12719 A 5 5
34 Brunei 12720 T 5 5
35 Brunei 12721 G 5 5
36 Brunei 12722 T 5 5
37 Brunei 12723 C 5 5
38 Brunei 12724 T 5 5
39 Brunei 12725 T 5 5
40 Brunei 12726 G 5 5
41 Brunei 12727 T 5 5
42 Brunei 12728 G 5 5
43 Brunei 12729 C 5 5
44 Brunei 12730 T 5 5
45 Brunei 12731 G 5 5
46 Brunei 12732 C 5 5
47 Brunei 12733 C 5 5
48 Brunei 12734 G 5 5
49 Brunei 12735 G 5 5
50 Brunei 12736 T 5 5
51 Brunei 12737 A 5 5
52 Brunei 12738 C 5 5
53 Brunei 12739 T 5 5
54 Brunei 12740 A 5 5
55 Brunei 12741 C 5 5
56 Brunei 12742 A 5 5
57 Brunei 12743 C 5 5
58 Brunei 12744 A 5 5
59 Brunei 12745 A 5 5
60 Brunei 12746 A 5 5
61 Brunei 12747 C 5 5
62 Brunei 12748 T 5 5
63 Brunei 12749 G 5 5
64 Brunei 12750 C 5 5
65 Brunei 12751 T 5 5
66 Brunei 12752 T 5 5
67 Brunei 12753 G 5 5
68 Brunei 12754 C 5 5
69 Brunei 12755 A 5 5
70 Brunei 12756 C 5 5
71 Brunei 12757 T 5 5
72 Brunei 12758 G 5 5
73 Brunei 12759 A 5 5
74 Brunei 12760 T 5 5
75 Brunei 12761 G 5 5
76 Brunei 12762 A 5 5
77 Brunei 12763 C 5 5
78 Brunei 12764 A 5 5
79 Brunei 12765 A 5 5
80 Brunei 12766 T 5 5
81 Brunei 12767 G 5 5
82 Brunei 12768 C 5 5
83 Brunei 12769 G 5 5
84 Brunei 12770 T 5 5
85 Brunei 12771 T 5 5
86 Brunei 12772 A 5 5
87 Brunei 12773 G 5 5
88 Brunei 12774 C 5 5
89 Brunei 12775 T 5 5
90 Brunei 12776 T 5 5
91 Brunei 12777 A 5 5
92 Brunei 12778 C 5 5
93 Brunei 12779 T 5 5
94 Brunei 12780 A 5 5
95 Brunei 12781 C 5 5
96 Brunei 12782 A 5 5
97 Brunei 12783 A 5 5
98 Brunei 12784 C 5 5
99 Brunei 12785 A 5 5
100 Brunei 12786 C 5 5
101 Brunei 12787 A 5 5
102 Brunei 12788 A 5 5
103 Brunei 12789 C 5 5
104 Brunei 12790 A 5 5
105 Brunei 12791 A 5 5
106 Brunei 12792 A 5 5
107 Brunei 12793 G 5 5
108 Brunei 12794 G 5 5
109 Brunei 12795 G 5 5
110 Brunei 12796 A 5 5
111 Brunei 12797 G 5 5
112 Brunei 12798 G 5 5
113 Brunei 12799 T 5 5
114 Brunei 12800 A 5 5
115 Brunei 12801 G 5 5
116 Brunei 12802 G 5 5
117 Brunei 12803 T 5 5
118 Brunei 12804 T 5 5
119 Brunei 12805 T 5 5
120 Brunei 12806 G 5 5
121 Brunei 12807 T 5 5
122 Brunei 12808 A 5 5
123 Brunei 12809 C 5 5
124 Brunei 12810 T 5 5
125 Brunei 12811 T 5 5
126 Brunei 12812 G 5 5
127 Brunei 12813 C 5 5
128 Brunei 12814 A 5 5
129 Brunei 12815 C 5 5
130 Brunei 12816 T 5 5
131 Brunei 12817 G 5 5
132 Brunei 12818 T 5 5
133 Brunei 12819 T 5 5
134 Brunei 12820 A 5 5
135 Brunei 12821 T 5 5
136 Brunei 12822 C 5 5
137 Brunei 12823 C 5 5
138 Brunei 12824 G 5 5
139 Brunei 12825 A 5 5
140 Brunei 12826 T 5 5
141 Brunei 12827 T 5 5
142 Brunei 12828 T 5 5
143 Brunei 12829 A 5 5
144 Brunei 12830 C 5 5
145 Brunei 12831 A 5 5
146 Brunei 12832 G 5 5
147 Brunei 12833 G 5 5
148 Brunei 12834 A 5 5
149 Brunei 12835 T 5 5
150 Brunei 12836 T 5 5
151 Brunei 12837 T 5 5
152 Brunei 12838 G 5 5
153 Brunei 12839 A 5 5
154 Brunei 12840 A 5 5
155 Brunei 12841 A 5 5
156 Brunei 12842 T 5 5
157 Brunei 12843 G 5 5
158 Brunei 12844 G 5 5
159 Brunei 12845 G 5 5
160 Brunei 12846 C 5 5
161 Brunei 12847 T 5 5
162 Brunei 12848 A 5 5
163 Brunei 12849 G 5 5
164 Brunei 12850 A 5 5
165 Brunei 12851 T 5 5
166 Brunei 12852 T 5 5
167 Brunei 12853 C 5 5
168 Brunei 12854 C 5 5
169 Brunei 12855 C 5 5
170 Brunei 12856 T 5 5
171 Brunei 12857 A 5 5
172 Brunei 12858 A 5 5
173 Brunei 12859 G 5 5
174 Brunei 12860 A 5 5
175 Brunei 12861 G 5 5
176 Brunei 12862 T 5 5
177 Brunei 12863 G 5 5
178 Brunei 12864 A 5 5
179 Brunei 12865 T 5 5
180 Brunei 12866 G 5 5
181 Brunei 12867 G 5 5
182 Brunei 12868 A 5 5
183 Brunei 12869 A 5 5
184 Brunei 12870 C 5 5
185 Brunei 12871 T 5 5
186 Brunei 12872 G 5 5
187 Brunei 12873 G 5 5
188 Brunei 12874 T 5 5
189 Brunei 12875 A 5 5
190 Brunei 12876 C 5 5
191 Brunei 12877 T 5 5
192 Brunei 12878 A 5 5
193 Brunei 12879 T 5 5
194 Brunei 12880 C 5 5
195 Brunei 12881 T 5 5
196 Brunei 12882 A 5 5
197 Brunei 12883 T 5 5
198 Brunei 12884 A 5 5
199 Brunei 12885 C 5 5
200 Brunei 12886 A 5 5
201 Brunei 12887 G 5 5
202 Brunei 12888 A 5 5
203 Brunei 12889 A 5 5
204 Brunei 12890 C 5 5
205 Brunei 12891 T 5 5
206 Brunei 12892 G 5 5
207 Brunei 12893 G 5 5
208 Brunei 12894 A 5 5
209 Brunei 12895 A 5 5
210 Brunei 12896 C 5 5
211 Brunei 12897 C 5 5
212 Brunei 12898 A 5 5
213 Brunei 12899 C 5 5
214 Brunei 12900 C 5 5
215 Brunei 12901 T 5 5
216 Brunei 12902 T 5 5
217 Brunei 12903 G 5 5
218 Brunei 12904 T 5 5
219 Brunei 12905 A 5 5
220 Brunei 12906 G 5 5
221 Brunei 12907 G 5 5
222 Brunei 12908 T 5 5
223 Brunei 12909 T 5 5
224 Brunei 12910 T 5 5
225 Brunei 12911 G 5 5
226 Brunei 12912 T 5 5
227 Brunei 12913 T 5 5
228 Brunei 12914 A 5 5
229 Brunei 12915 C 5 5
230 Brunei 12916 A 5 5
231 Brunei 12917 G 5 5
232 Brunei 12918 A 5 5
233 Brunei 12919 C 5 5
234 Brunei 12920 A 5 5
235 Brunei 12921 C 5 5
236 Brunei 12922 A 5 5
237 Brunei 12923 C 5 5
238 Brunei 12924 C 5 5
239 Brunei 12925 T 5 5
240 Brunei 12926 A 5 5
241 Brunei 12927 A 5 5
242 Brunei 12928 A 5 5
243 Brunei 12929 G 5 5
244 Brunei 12930 G 5 5
245 Brunei 12931 T 5 5
246 Brunei 12932 C 5 5
247 Brunei 12933 C 5 5
248 Brunei 12934 T 5 5
249 Brunei 12935 A 5 5
250 Brunei 12936 A 5 5
251 Brunei 12937 A 5 5
252 Brunei 12938 G 5 5
253 Brunei 12939 T 5 5
254 Brunei 12940 G 5 5
255 Brunei 12941 A 5 5
256 Brunei 12942 A 5 5
257 Brunei 12943 G 5 5
258 Brunei 12944 T 5 5
259 Brunei 12945 A 5 5
260 Brunei 12946 T 5 5
261 Brunei 12947 T 5 5
262 Brunei 12948 T 5 5
263 Brunei 12949 A 5 5
264 Brunei 12950 T 5 5
265 Brunei 12951 A 5 5
266 Brunei 12952 C 5 5
267 Brunei 12953 T 5 5
268 Brunei 12954 T 5 5
269 Brunei 12955 T 5 5
270 Brunei 12956 A 5 5
271 Brunei 12957 T 5 5
272 Brunei 12958 T 5 5
273 Brunei 12959 A 5 5
274 Brunei 12960 A 5 5
275 Brunei 12961 A 5 5
276 Brunei 12962 G 5 5
277 Brunei 12963 G 5 5
278 Brunei 12964 A 5 5
279 Brunei 12965 T 5 5
280 Brunei 12966 T 5 5
281 Brunei 12967 A 5 5
282 Brunei 12968 A 5 5
283 Brunei 12969 A 5 5
284 Brunei 12970 C 5 5
285 Brunei 12971 A 5 5
286 Brunei 12972 A 5 5
287 Brunei 12973 C 5 5
288 Brunei 12974 C 5 5
289 Brunei 12975 T 5 5
290 Brunei 12976 A 5 5
291 Brunei 12977 A 5 5
292 Brunei 12978 A 5 5
293 Brunei 12979 T 5 5
294 Brunei 12980 A 5 5
295 Brunei 12981 G 5 5
296 Brunei 12982 A 5 5
297 Brunei 12983 G 5 5
298 Brunei 12984 G 5 5
299 Brunei 12985 T 5 5
300 Brunei 12986 A 5 5
301 Brunei 12987 T 5 5
302 Brunei 12988 G 5 5
303 Brunei 12989 G 5 5
304 Brunei 12990 T 5 5
305 Brunei 12991 A 5 5
306 Brunei 12992 C 5 5
307 Brunei 12993 T 5 5
308 Brunei 12994 T 5 5
309 Brunei 12995 G 5 5
310 Brunei 12996 G 5 5
311 Brunei 12997 T 5 5
312 Brunei 12998 A 5 5
313 Brunei 12999 G 5 5
314 Brunei 13000 T 5 5
315 Brunei 13001 T 5 5
316 Brunei 13002 T 5 5
317 Brunei 13003 A 5 5
318 Brunei 13004 G 5 5
319 Brunei 13005 C 5 5
320 Brunei 13006 T 5 5
321 Brunei 13007 G 5 5
322 Brunei 13008 C 5 5
323 Brunei 13009 C 5 5
324 Brunei 13010 A 5 5
325 Brunei 13011 C 5 5
326 Brunei 13012 A 5 5
327 Brunei 13013 G 5 5
328 Brunei 13014 T 5 5
329 Brunei 13015 A 5 5
330 Brunei 13016 C 5 5
331 Brunei 13017 G 5 5
332 Brunei 13018 T 5 5
333 Brunei 13019 C 5 5
334 Brunei 13020 T 5 5
335 Brunei 13021 A 5 5
336 Brunei 13022 C 5 5
337 Brunei 13023 A 5 5
338 Brunei 13024 A 5 5