National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30 2                                      
C   9                                        
D   18                       1           1   1
E   9                                        
F   12                                        
G   27           1                            
H                                            
I   6                                        
K   21                 1     1                
L   45         1         3                    
M   6               2                 1      
N   21     1                 3                
P   18                   1     1              
Q   12             1                          
R   18   1             1                      
S   15                               1        
T   36               7                 1      
V   18               1                        
W   3                                        
Y   15             1                         2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Brazil 12686 A 2173 2173
1 Brazil 12687 A 2173 2173
2 Brazil 12688 T C 2173 2172 Asn4141Asn
3 Brazil 12689 A 2173 2173
4 Brazil 12690 A 2173 2173
5 Brazil 12691 T 2173 2173
6 Brazil 12692 G 2186 2186
7 Brazil 12693 A 2186 2186
8 Brazil 12694 G 2186 2186
9 Brazil 12695 C 2186 2186
10 Brazil 12696 T 2186 2186
11 Brazil 12697 T 2186 2186
12 Brazil 12698 A 2186 2186
13 Brazil 12699 G 2186 2186
14 Brazil 12700 T 2186 2186
15 Brazil 12701 C 2186 2186
16 Brazil 12702 C 2186 2186
17 Brazil 12703 T 2186 2186
18 Brazil 12704 G 2186 2186
19 Brazil 12705 T 2186 2186
20 Brazil 12706 T 2186 2186
21 Brazil 12707 G 2186 2186
22 Brazil 12708 C 2186 2186
23 Brazil 12709 A 2186 2186
24 Brazil 12710 C 2186 2186
25 Brazil 12711 T 2186 2186
26 Brazil 12712 A 2186 2186
27 Brazil 12713 C 2186 2186
28 Brazil 12714 G 2187 2187
29 Brazil 12715 A 2187 2187
30 Brazil 12716 C 2187 2187
31 Brazil 12717 A 2187 2187
32 Brazil 12718 G 2187 2187
33 Brazil 12719 A 2187 2187
34 Brazil 12720 T 2187 2187
35 Brazil 12721 G A 2187 2186 Met4152Ile
36 Brazil 12722 T 2187 2187
37 Brazil 12723 C 2187 2187
38 Brazil 12724 T 2187 2187
39 Brazil 12725 T 2187 2187
40 Brazil 12726 G 2187 2187
41 Brazil 12727 T 2187 2186
42 Brazil 12728 G 2187 2186
43 Brazil 12729 C 2187 2186
44 Brazil 12730 T 2187 2185
45 Brazil 12731 G 2187 2185
46 Brazil 12732 C 2187 2184
47 Brazil 12733 C T 2195 2192 Ala4156Ala
48 Brazil 12734 G 2195 2194
49 Brazil 12735 G 2195 2195
50 Brazil 12736 T 2195 2195
51 Brazil 12737 A 2195 2195
52 Brazil 12738 C 2195 2195
53 Brazil 12739 T 2195 2195
54 Brazil 12740 A 2195 2195
55 Brazil 12741 C T 2195 2190 Thr4159Ile
56 Brazil 12742 A 2195 2195
57 Brazil 12743 C 2195 2195
58 Brazil 12744 A 2195 2195
59 Brazil 12745 A 2195 2195
60 Brazil 12746 A 2195 2195
61 Brazil 12747 C T 2195 2194 Thr4161Ile
62 Brazil 12748 T 2195 2195
63 Brazil 12749 G 2195 2195
64 Brazil 12750 C 2195 2195
65 Brazil 12751 T 2195 2195
66 Brazil 12752 T 2195 2195
67 Brazil 12753 G 2195 2195
68 Brazil 12754 C 2195 2195
69 Brazil 12755 A 2195 2195
70 Brazil 12756 C 2195 2195
71 Brazil 12757 T 2195 2195
72 Brazil 12758 G 2195 2195
73 Brazil 12759 A 2195 2195
74 Brazil 12760 T 2195 2195
75 Brazil 12761 G 2195 2195
76 Brazil 12762 A 2195 2195
77 Brazil 12763 C 2195 2195
78 Brazil 12764 A 2195 2195
79 Brazil 12765 A 2195 2195
80 Brazil 12766 T 2195 2195
81 Brazil 12767 G 2195 2195
82 Brazil 12768 C 2195 2195
83 Brazil 12769 G T 2195 2185 Ala4168Ala
84 Brazil 12770 T 2195 2195
85 Brazil 12771 T 2195 2195
86 Brazil 12772 A 2195 2195
87 Brazil 12773 G 2195 2195
88 Brazil 12774 C 2195 2195
89 Brazil 12775 T 2195 2195
90 Brazil 12776 T 2195 2195
91 Brazil 12777 A 2195 2195
92 Brazil 12778 C T 2195 2163 Tyr4171Tyr
93 Brazil 12779 T 2195 2195
94 Brazil 12780 A 2192 2192
95 Brazil 12781 C T 2192 2188 Tyr4172Tyr
96 Brazil 12782 A G 2192 2191 Asn4173Asp
97 Brazil 12783 A 2192 2192
98 Brazil 12784 C T 2192 2191 Asn4173Asn
99 Brazil 12785 A 2192 2192
100 Brazil 12786 C T 2192 2191 Thr4174Ile
101 Brazil 12787 A T 2192 2191 Thr4174Thr
102 Brazil 12788 A 2192 2192
103 Brazil 12789 C T 2192 2188 Thr4175Ile
104 Brazil 12790 A 2192 2192
105 Brazil 12791 A 2192 2192
106 Brazil 12792 A 2192 2192
107 Brazil 12793 G T 2192 2190 Lys4176Asn
108 Brazil 12794 G 2192 2192
109 Brazil 12795 G 2192 2192
110 Brazil 12796 A 2192 2192
111 Brazil 12797 G 2192 2192
112 Brazil 12798 G 2192 2192
113 Brazil 12799 T 2192 2192
114 Brazil 12800 A 2192 2192
115 Brazil 12801 G A 2192 2191 Arg4179Lys
116 Brazil 12802 G 2192 2192
117 Brazil 12803 T 2192 2192
118 Brazil 12804 T 2192 2192
119 Brazil 12805 T 2192 2192
120 Brazil 12806 G 2192 2192
121 Brazil 12807 T 2192 2192
122 Brazil 12808 A 2192 2192
123 Brazil 12809 C T 2192 2189 Leu4182Phe
124 Brazil 12810 T 2192 2192
125 Brazil 12811 T G 2192 2184 Leu4182Leu
126 Brazil 12812 G 2192 2192
127 Brazil 12813 C 2192 2192
128 Brazil 12814 A 2192 2192
129 Brazil 12815 C 2192 2192
130 Brazil 12816 T 2192 2192
131 Brazil 12817 G 2192 2192
132 Brazil 12818 T 2192 2192
133 Brazil 12819 T 2192 2192
134 Brazil 12820 A G 2192 2191 Leu4185Leu
135 Brazil 12821 T 2192 2192
136 Brazil 12822 C 2192 2192
137 Brazil 12823 C T 2192 2191 Ser4186Ser
138 Brazil 12824 G T,A 2192 2190 Asp4187Tyr-p.Asp4187Asn
139 Brazil 12825 A T 2192 2191 Asp4187Val
140 Brazil 12826 T 2192 2192
141 Brazil 12827 T 2192 2192
142 Brazil 12828 T 2192 2192
143 Brazil 12829 A 2192 2192
144 Brazil 12830 C 2192 2192
145 Brazil 12831 A 2192 2192
146 Brazil 12832 G T 2192 2189 Gln4189His
147 Brazil 12833 G 2192 2192
148 Brazil 12834 A 2192 2192
149 Brazil 12835 T 2192 2192
150 Brazil 12836 T 2192 2192
151 Brazil 12837 T 2192 2192
152 Brazil 12838 G 2192 2192
153 Brazil 12839 A 2192 2192
154 Brazil 12840 A 2192 2192
155 Brazil 12841 A 2192 2192
156 Brazil 12842 T 2192 2192
157 Brazil 12843 G 2192 2192
158 Brazil 12844 G 2192 2192
159 Brazil 12845 G 2192 2192
160 Brazil 12846 C 2192 2192
161 Brazil 12847 T 2192 2192
162 Brazil 12848 A 2192 2192
163 Brazil 12849 G 2192 2192
164 Brazil 12850 A 2192 2192
165 Brazil 12851 T 2192 2192
166 Brazil 12852 T 2192 2192
167 Brazil 12853 C 2192 2192
168 Brazil 12854 C 2192 2192
169 Brazil 12855 C 2192 2192
170 Brazil 12856 T 2192 2192
171 Brazil 12857 A 2192 2192
172 Brazil 12858 A 2192 2192
173 Brazil 12859 G 2192 2192
174 Brazil 12860 A 2192 2192
175 Brazil 12861 G 2192 2192
176 Brazil 12862 T 2192 2192
177 Brazil 12863 G 2192 2192
178 Brazil 12864 A 2192 2192
179 Brazil 12865 T 2192 2192
180 Brazil 12866 G 2192 2192
181 Brazil 12867 G 2192 2192
182 Brazil 12868 A 2192 2192
183 Brazil 12869 A 2192 2192
184 Brazil 12870 C 2192 2192
185 Brazil 12871 T 2192 2192
186 Brazil 12872 G 2192 2192
187 Brazil 12873 G 2192 2192
188 Brazil 12874 T 2192 2192
189 Brazil 12875 A 2192 2192
190 Brazil 12876 C 2192 2192
191 Brazil 12877 T 2192 2192
192 Brazil 12878 A 2193 2193
193 Brazil 12879 T 2193 2193
194 Brazil 12880 C 2193 2193
195 Brazil 12881 T C 2193 2190 Tyr4206His
196 Brazil 12882 A 2193 2193
197 Brazil 12883 T 2193 2193
198 Brazil 12884 A 2193 2193
199 Brazil 12885 C T 2193 2191 Thr4207Ile
200 Brazil 12886 A 2193 2193
201 Brazil 12887 G 2193 2193
202 Brazil 12888 A 2193 2193
203 Brazil 12889 A 2193 2193
204 Brazil 12890 C 2193 2193
205 Brazil 12891 T 2193 2193
206 Brazil 12892 G 2193 2193
207 Brazil 12893 G 2193 2193
208 Brazil 12894 A 2193 2193
209 Brazil 12895 A 2193 2193
210 Brazil 12896 C 2193 2193
211 Brazil 12897 C T 2193 2192 Pro4211Leu
212 Brazil 12898 A 2193 2193
213 Brazil 12899 C 2193 2193
214 Brazil 12900 C 2193 2193
215 Brazil 12901 T 2193 2193
216 Brazil 12902 T 2193 2193
217 Brazil 12903 G 2193 2193
218 Brazil 12904 T 2193 2193
219 Brazil 12905 A 2193 2193
220 Brazil 12906 G 2193 2193
221 Brazil 12907 G 2193 2193
222 Brazil 12908 T 2193 2193
223 Brazil 12909 T 2193 2193
224 Brazil 12910 T 2193 2193
225 Brazil 12911 G A 2193 2192 Val4216Ile
226 Brazil 12912 T 2193 2193
227 Brazil 12913 T 2193 2193
228 Brazil 12914 A 2193 2193
229 Brazil 12915 C T 2193 2192 Thr4217Ile
230 Brazil 12916 A 2193 2193
231 Brazil 12917 G 2193 2192
232 Brazil 12918 A 2193 2193
233 Brazil 12919 C 2193 2193
234 Brazil 12920 A 2193 2192
235 Brazil 12921 C 2193 2192
236 Brazil 12922 A 2193 2193
237 Brazil 12923 C 2193 2193
238 Brazil 12924 C 2193 2193
239 Brazil 12925 T C 2193 2191 Pro4220Pro
240 Brazil 12926 A 2193 2193
241 Brazil 12927 A 2193 2193
242 Brazil 12928 A 2193 2193
243 Brazil 12929 G 2193 2193
244 Brazil 12930 G 2193 2193
245 Brazil 12931 T 2193 2193
246 Brazil 12932 C 2193 2193
247 Brazil 12933 C 2193 2193
248 Brazil 12934 T 2193 2193
249 Brazil 12935 A 2193 2193
250 Brazil 12936 A 2193 2193
251 Brazil 12937 A 2193 2193
252 Brazil 12938 G 2193 2193
253 Brazil 12939 T 2193 2193
254 Brazil 12940 G 2193 2193
255 Brazil 12941 A 2193 2193
256 Brazil 12942 A 2193 2193
257 Brazil 12943 G 2193 2193
258 Brazil 12944 T 2193 2193
259 Brazil 12945 A 2193 2193
260 Brazil 12946 T 2193 2193
261 Brazil 12947 T 2193 2193
262 Brazil 12948 T 2193 2193
263 Brazil 12949 A 2193 2193
264 Brazil 12950 T 2193 2193
265 Brazil 12951 A 2193 2193
266 Brazil 12952 C 2192 2192
267 Brazil 12953 T 2192 2192
268 Brazil 12954 T 2192 2192
269 Brazil 12955 T 2192 2192
270 Brazil 12956 A 2192 2192
271 Brazil 12957 T 2192 2192
272 Brazil 12958 T 2192 2192
273 Brazil 12959 A 2192 2192
274 Brazil 12960 A 2192 2192
275 Brazil 12961 A G 2192 2191 Lys4232Lys
276 Brazil 12962 G 2192 2192
277 Brazil 12963 G 2192 2192
278 Brazil 12964 A G 2192 2099 Gly4233Gly
279 Brazil 12965 T 2192 2192
280 Brazil 12966 T 2192 2192
281 Brazil 12967 A 2192 2192
282 Brazil 12968 A 2192 2192
283 Brazil 12969 A 2192 2192
284 Brazil 12970 C T 2192 2190 Asn4235Asn
285 Brazil 12971 A 2192 2192
286 Brazil 12972 A 2192 2192
287 Brazil 12973 C 2192 2192
288 Brazil 12974 C 2192 2192
289 Brazil 12975 T 2192 2192
290 Brazil 12976 A 2192 2192
291 Brazil 12977 A 2192 2192
292 Brazil 12978 A 2192 2192
293 Brazil 12979 T 2192 2192
294 Brazil 12980 A 2192 2192
295 Brazil 12981 G 2192 2192
296 Brazil 12982 A 2192 2192
297 Brazil 12983 G 2192 2192
298 Brazil 12984 G 2192 2192
299 Brazil 12985 T 2192 2192
300 Brazil 12986 A 2192 2192
301 Brazil 12987 T C 2192 2191 Met4241Thr
302 Brazil 12988 G A 2192 2191 Met4241Ile
303 Brazil 12989 G 2192 2192
304 Brazil 12990 T 2192 2192
305 Brazil 12991 A 2192 2192
306 Brazil 12992 C 2192 2192
307 Brazil 12993 T 2192 2192
308 Brazil 12994 T 2192 2192
309 Brazil 12995 G 2192 2192
310 Brazil 12996 G 2192 2192
311 Brazil 12997 T 2192 2192
312 Brazil 12998 A 2192 2192
313 Brazil 12999 G 2192 2192
314 Brazil 13000 T 2192 2192
315 Brazil 13001 T 2192 2192
316 Brazil 13002 T 2192 2192
317 Brazil 13003 A 2192 2192
318 Brazil 13004 G 2192 2192
319 Brazil 13005 C 2192 2192
320 Brazil 13006 T 2192 2192
321 Brazil 13007 G 2192 2192
322 Brazil 13008 C 2192 2192
323 Brazil 13009 C 2192 2192
324 Brazil 13010 A 2192 2192
325 Brazil 13011 C T 2192 2190 Thr4249Ile
326 Brazil 13012 A 2192 2192
327 Brazil 13013 G 2192 2192
328 Brazil 13014 T 2192 2192
329 Brazil 13015 A 2192 2192
330 Brazil 13016 C T 2192 2191 Arg4251Cys
331 Brazil 13017 G 2192 2192
332 Brazil 13018 T 2192 2192
333 Brazil 13019 C T 2192 2191 Leu4252Leu
334 Brazil 13020 T 2192 2192
335 Brazil 13021 A 2191 2191
336 Brazil 13022 C 2191 2191
337 Brazil 13023 A 2191 2191
338 Brazil 13024 A 2191 2191