National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45         1                            
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Botswana 12686 A 13 13
1 Botswana 12687 A 13 13
2 Botswana 12688 T 13 13
3 Botswana 12689 A 13 13
4 Botswana 12690 A 13 13
5 Botswana 12691 T 13 13
6 Botswana 12692 G 13 13
7 Botswana 12693 A 13 13
8 Botswana 12694 G 13 13
9 Botswana 12695 C T 13 12 Leu4144Phe
10 Botswana 12696 T 13 13
11 Botswana 12697 T 13 13
12 Botswana 12698 A 13 13
13 Botswana 12699 G 13 13
14 Botswana 12700 T 13 13
15 Botswana 12701 C 13 13
16 Botswana 12702 C 13 13
17 Botswana 12703 T 13 13
18 Botswana 12704 G 13 13
19 Botswana 12705 T 13 13
20 Botswana 12706 T 13 13
21 Botswana 12707 G 13 13
22 Botswana 12708 C 13 13
23 Botswana 12709 A 13 13
24 Botswana 12710 C 13 13
25 Botswana 12711 T 13 13
26 Botswana 12712 A 13 13
27 Botswana 12713 C 13 13
28 Botswana 12714 G 13 13
29 Botswana 12715 A 13 13
30 Botswana 12716 C 13 13
31 Botswana 12717 A 13 13
32 Botswana 12718 G 13 13
33 Botswana 12719 A 13 13
34 Botswana 12720 T 13 13
35 Botswana 12721 G 13 13
36 Botswana 12722 T 13 13
37 Botswana 12723 C 13 13
38 Botswana 12724 T 13 13
39 Botswana 12725 T 13 13
40 Botswana 12726 G 13 13
41 Botswana 12727 T 13 13
42 Botswana 12728 G 13 13
43 Botswana 12729 C 13 13
44 Botswana 12730 T 13 13
45 Botswana 12731 G 13 13
46 Botswana 12732 C 13 13
47 Botswana 12733 C 13 13
48 Botswana 12734 G 13 13
49 Botswana 12735 G 13 13
50 Botswana 12736 T 13 13
51 Botswana 12737 A 13 13
52 Botswana 12738 C 13 13
53 Botswana 12739 T 13 13
54 Botswana 12740 A 13 13
55 Botswana 12741 C 13 13
56 Botswana 12742 A 13 13
57 Botswana 12743 C 13 13
58 Botswana 12744 A 13 13
59 Botswana 12745 A 13 13
60 Botswana 12746 A 13 13
61 Botswana 12747 C 13 13
62 Botswana 12748 T 13 13
63 Botswana 12749 G 13 13
64 Botswana 12750 C 13 13
65 Botswana 12751 T 13 13
66 Botswana 12752 T 13 13
67 Botswana 12753 G 13 13
68 Botswana 12754 C 13 13
69 Botswana 12755 A 13 13
70 Botswana 12756 C 13 13
71 Botswana 12757 T 13 13
72 Botswana 12758 G 13 13
73 Botswana 12759 A 13 13
74 Botswana 12760 T 13 13
75 Botswana 12761 G 13 13
76 Botswana 12762 A 13 13
77 Botswana 12763 C 13 13
78 Botswana 12764 A 13 13
79 Botswana 12765 A 13 13
80 Botswana 12766 T 13 13
81 Botswana 12767 G 13 13
82 Botswana 12768 C 13 13
83 Botswana 12769 G 13 13
84 Botswana 12770 T 13 13
85 Botswana 12771 T 13 13
86 Botswana 12772 A 13 13
87 Botswana 12773 G 13 13
88 Botswana 12774 C 13 13
89 Botswana 12775 T 13 13
90 Botswana 12776 T 13 13
91 Botswana 12777 A 13 13
92 Botswana 12778 C 13 13
93 Botswana 12779 T 13 13
94 Botswana 12780 A 13 13
95 Botswana 12781 C 13 13
96 Botswana 12782 A 13 13
97 Botswana 12783 A 13 13
98 Botswana 12784 C 13 13
99 Botswana 12785 A 13 13
100 Botswana 12786 C 13 13
101 Botswana 12787 A 13 13
102 Botswana 12788 A 13 13
103 Botswana 12789 C 13 13
104 Botswana 12790 A 13 13
105 Botswana 12791 A 13 13
106 Botswana 12792 A 13 13
107 Botswana 12793 G 13 13
108 Botswana 12794 G 13 13
109 Botswana 12795 G 13 13
110 Botswana 12796 A 13 13
111 Botswana 12797 G 13 13
112 Botswana 12798 G 13 13
113 Botswana 12799 T 13 13
114 Botswana 12800 A 13 13
115 Botswana 12801 G 13 13
116 Botswana 12802 G 13 13
117 Botswana 12803 T 13 13
118 Botswana 12804 T 13 13
119 Botswana 12805 T 13 13
120 Botswana 12806 G 13 13
121 Botswana 12807 T 13 13
122 Botswana 12808 A 13 13
123 Botswana 12809 C 13 13
124 Botswana 12810 T 13 13
125 Botswana 12811 T 13 13
126 Botswana 12812 G 13 13
127 Botswana 12813 C 13 13
128 Botswana 12814 A 13 13
129 Botswana 12815 C 13 13
130 Botswana 12816 T 13 13
131 Botswana 12817 G 13 13
132 Botswana 12818 T 13 13
133 Botswana 12819 T 13 13
134 Botswana 12820 A 13 13
135 Botswana 12821 T 13 13
136 Botswana 12822 C 13 13
137 Botswana 12823 C 13 13
138 Botswana 12824 G 13 13
139 Botswana 12825 A 13 13
140 Botswana 12826 T 13 13
141 Botswana 12827 T 13 13
142 Botswana 12828 T 13 13
143 Botswana 12829 A 13 13
144 Botswana 12830 C 13 13
145 Botswana 12831 A 13 13
146 Botswana 12832 G 13 13
147 Botswana 12833 G 13 13
148 Botswana 12834 A 13 13
149 Botswana 12835 T 13 13
150 Botswana 12836 T 13 13
151 Botswana 12837 T 13 13
152 Botswana 12838 G 13 13
153 Botswana 12839 A 13 13
154 Botswana 12840 A 13 13
155 Botswana 12841 A 13 13
156 Botswana 12842 T 13 13
157 Botswana 12843 G 13 13
158 Botswana 12844 G 13 13
159 Botswana 12845 G 13 13
160 Botswana 12846 C 13 13
161 Botswana 12847 T 13 13
162 Botswana 12848 A 13 13
163 Botswana 12849 G 13 13
164 Botswana 12850 A 13 13
165 Botswana 12851 T 13 13
166 Botswana 12852 T 13 13
167 Botswana 12853 C 13 13
168 Botswana 12854 C 13 13
169 Botswana 12855 C 13 13
170 Botswana 12856 T 13 13
171 Botswana 12857 A 13 13
172 Botswana 12858 A 13 13
173 Botswana 12859 G 13 13
174 Botswana 12860 A 13 13
175 Botswana 12861 G 13 13
176 Botswana 12862 T 13 13
177 Botswana 12863 G 13 13
178 Botswana 12864 A 13 13
179 Botswana 12865 T 13 13
180 Botswana 12866 G 13 13
181 Botswana 12867 G 13 13
182 Botswana 12868 A 13 13
183 Botswana 12869 A 13 13
184 Botswana 12870 C 13 13
185 Botswana 12871 T 13 13
186 Botswana 12872 G 13 13
187 Botswana 12873 G 13 13
188 Botswana 12874 T 13 13
189 Botswana 12875 A 13 13
190 Botswana 12876 C 13 13
191 Botswana 12877 T 13 13
192 Botswana 12878 A 13 13
193 Botswana 12879 T 13 13
194 Botswana 12880 C 13 13
195 Botswana 12881 T 13 13
196 Botswana 12882 A 13 13
197 Botswana 12883 T 13 13
198 Botswana 12884 A 13 13
199 Botswana 12885 C 13 13
200 Botswana 12886 A 13 13
201 Botswana 12887 G 13 13
202 Botswana 12888 A 13 13
203 Botswana 12889 A 13 13
204 Botswana 12890 C 13 13
205 Botswana 12891 T 13 13
206 Botswana 12892 G 13 13
207 Botswana 12893 G 13 13
208 Botswana 12894 A 13 13
209 Botswana 12895 A 13 13
210 Botswana 12896 C 13 13
211 Botswana 12897 C 13 13
212 Botswana 12898 A 13 13
213 Botswana 12899 C 13 13
214 Botswana 12900 C 13 13
215 Botswana 12901 T 13 13
216 Botswana 12902 T 13 13
217 Botswana 12903 G 13 13
218 Botswana 12904 T 13 13
219 Botswana 12905 A 13 13
220 Botswana 12906 G 13 13
221 Botswana 12907 G 13 13
222 Botswana 12908 T 13 13
223 Botswana 12909 T 13 13
224 Botswana 12910 T 13 13
225 Botswana 12911 G 13 13
226 Botswana 12912 T 13 13
227 Botswana 12913 T 13 13
228 Botswana 12914 A 13 13
229 Botswana 12915 C 13 13
230 Botswana 12916 A 13 13
231 Botswana 12917 G 13 13
232 Botswana 12918 A 13 13
233 Botswana 12919 C 13 13
234 Botswana 12920 A 13 13
235 Botswana 12921 C 13 13
236 Botswana 12922 A 13 13
237 Botswana 12923 C 13 13
238 Botswana 12924 C 13 13
239 Botswana 12925 T 13 13
240 Botswana 12926 A 13 13
241 Botswana 12927 A 13 13
242 Botswana 12928 A 13 13
243 Botswana 12929 G 13 13
244 Botswana 12930 G 13 13
245 Botswana 12931 T 13 13
246 Botswana 12932 C 13 13
247 Botswana 12933 C 13 13
248 Botswana 12934 T 13 13
249 Botswana 12935 A 13 13
250 Botswana 12936 A 13 13
251 Botswana 12937 A 13 13
252 Botswana 12938 G 13 13
253 Botswana 12939 T 13 13
254 Botswana 12940 G 13 13
255 Botswana 12941 A 13 13
256 Botswana 12942 A 13 13
257 Botswana 12943 G 13 13
258 Botswana 12944 T 13 13
259 Botswana 12945 A 13 13
260 Botswana 12946 T 13 13
261 Botswana 12947 T 13 13
262 Botswana 12948 T 13 13
263 Botswana 12949 A 13 13
264 Botswana 12950 T 13 13
265 Botswana 12951 A 13 13
266 Botswana 12952 C 13 13
267 Botswana 12953 T 13 13
268 Botswana 12954 T 13 13
269 Botswana 12955 T 13 13
270 Botswana 12956 A 13 13
271 Botswana 12957 T 13 13
272 Botswana 12958 T 13 13
273 Botswana 12959 A 13 13
274 Botswana 12960 A 13 13
275 Botswana 12961 A 13 13
276 Botswana 12962 G 13 13
277 Botswana 12963 G 13 13
278 Botswana 12964 A 13 13
279 Botswana 12965 T 13 13
280 Botswana 12966 T 13 13
281 Botswana 12967 A 13 13
282 Botswana 12968 A 13 13
283 Botswana 12969 A 13 13
284 Botswana 12970 C 13 13
285 Botswana 12971 A 13 13
286 Botswana 12972 A 13 13
287 Botswana 12973 C 13 13
288 Botswana 12974 C 13 13
289 Botswana 12975 T 13 13
290 Botswana 12976 A 13 13
291 Botswana 12977 A 13 13
292 Botswana 12978 A 13 13
293 Botswana 12979 T 13 13
294 Botswana 12980 A 13 13
295 Botswana 12981 G 13 13
296 Botswana 12982 A 13 13
297 Botswana 12983 G 13 13
298 Botswana 12984 G 13 13
299 Botswana 12985 T 13 13
300 Botswana 12986 A 13 13
301 Botswana 12987 T 13 13
302 Botswana 12988 G 13 13
303 Botswana 12989 G 13 13
304 Botswana 12990 T 13 13
305 Botswana 12991 A 13 13
306 Botswana 12992 C 13 13
307 Botswana 12993 T 13 13
308 Botswana 12994 T 13 13
309 Botswana 12995 G 13 13
310 Botswana 12996 G 13 13
311 Botswana 12997 T 13 13
312 Botswana 12998 A 13 13
313 Botswana 12999 G 13 13
314 Botswana 13000 T 13 13
315 Botswana 13001 T 13 13
316 Botswana 13002 T 13 13
317 Botswana 13003 A 13 13
318 Botswana 13004 G 13 13
319 Botswana 13005 C 13 13
320 Botswana 13006 T 13 13
321 Botswana 13007 G 13 13
322 Botswana 13008 C 13 13
323 Botswana 13009 C 13 13
324 Botswana 13010 A 13 13
325 Botswana 13011 C 13 13
326 Botswana 13012 A 13 13
327 Botswana 13013 G 13 13
328 Botswana 13014 T 13 13
329 Botswana 13015 A 13 13
330 Botswana 13016 C 13 13
331 Botswana 13017 G 13 13
332 Botswana 13018 T 13 13
333 Botswana 13019 C 13 13
334 Botswana 13020 T 13 13
335 Botswana 13021 A 13 13
336 Botswana 13022 C 13 13
337 Botswana 13023 A 13 13
338 Botswana 13024 A 13 13