National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bolivia 12686 A 27 27
1 Bolivia 12687 A 27 27
2 Bolivia 12688 T 27 27
3 Bolivia 12689 A 27 27
4 Bolivia 12690 A 27 27
5 Bolivia 12691 T 27 27
6 Bolivia 12692 G 27 27
7 Bolivia 12693 A 27 27
8 Bolivia 12694 G 27 27
9 Bolivia 12695 C 27 27
10 Bolivia 12696 T 27 27
11 Bolivia 12697 T 27 27
12 Bolivia 12698 A 27 27
13 Bolivia 12699 G 27 27
14 Bolivia 12700 T 27 27
15 Bolivia 12701 C 27 27
16 Bolivia 12702 C 27 27
17 Bolivia 12703 T 27 27
18 Bolivia 12704 G 27 27
19 Bolivia 12705 T 27 27
20 Bolivia 12706 T 27 27
21 Bolivia 12707 G 27 27
22 Bolivia 12708 C 27 27
23 Bolivia 12709 A 27 27
24 Bolivia 12710 C 27 27
25 Bolivia 12711 T 27 27
26 Bolivia 12712 A 27 27
27 Bolivia 12713 C 27 27
28 Bolivia 12714 G 27 27
29 Bolivia 12715 A 27 27
30 Bolivia 12716 C 27 27
31 Bolivia 12717 A 27 27
32 Bolivia 12718 G 27 27
33 Bolivia 12719 A 27 27
34 Bolivia 12720 T 27 27
35 Bolivia 12721 G 27 27
36 Bolivia 12722 T 27 27
37 Bolivia 12723 C 27 27
38 Bolivia 12724 T 27 27
39 Bolivia 12725 T 27 27
40 Bolivia 12726 G 27 27
41 Bolivia 12727 T 27 27
42 Bolivia 12728 G 27 27
43 Bolivia 12729 C 27 27
44 Bolivia 12730 T 27 27
45 Bolivia 12731 G 27 27
46 Bolivia 12732 C 27 27
47 Bolivia 12733 C 27 27
48 Bolivia 12734 G 27 27
49 Bolivia 12735 G 27 27
50 Bolivia 12736 T 27 27
51 Bolivia 12737 A 27 27
52 Bolivia 12738 C 27 27
53 Bolivia 12739 T 27 27
54 Bolivia 12740 A 27 27
55 Bolivia 12741 C 27 27
56 Bolivia 12742 A 27 27
57 Bolivia 12743 C 27 27
58 Bolivia 12744 A 27 27
59 Bolivia 12745 A 27 27
60 Bolivia 12746 A 27 27
61 Bolivia 12747 C 27 27
62 Bolivia 12748 T 27 27
63 Bolivia 12749 G 27 27
64 Bolivia 12750 C 27 27
65 Bolivia 12751 T 27 27
66 Bolivia 12752 T 27 27
67 Bolivia 12753 G 27 27
68 Bolivia 12754 C 27 27
69 Bolivia 12755 A 27 27
70 Bolivia 12756 C 27 27
71 Bolivia 12757 T 27 27
72 Bolivia 12758 G 27 27
73 Bolivia 12759 A 27 27
74 Bolivia 12760 T 27 27
75 Bolivia 12761 G 27 27
76 Bolivia 12762 A 27 27
77 Bolivia 12763 C 27 27
78 Bolivia 12764 A 27 27
79 Bolivia 12765 A 27 27
80 Bolivia 12766 T 27 27
81 Bolivia 12767 G 27 27
82 Bolivia 12768 C 27 27
83 Bolivia 12769 G 27 27
84 Bolivia 12770 T 27 27
85 Bolivia 12771 T 27 27
86 Bolivia 12772 A 27 27
87 Bolivia 12773 G 27 27
88 Bolivia 12774 C 27 27
89 Bolivia 12775 T 27 27
90 Bolivia 12776 T 27 27
91 Bolivia 12777 A 27 27
92 Bolivia 12778 C 27 27
93 Bolivia 12779 T 27 27
94 Bolivia 12780 A 27 27
95 Bolivia 12781 C 27 27
96 Bolivia 12782 A 27 27
97 Bolivia 12783 A 27 27
98 Bolivia 12784 C 27 27
99 Bolivia 12785 A 27 27
100 Bolivia 12786 C 27 27
101 Bolivia 12787 A 27 27
102 Bolivia 12788 A 27 27
103 Bolivia 12789 C 27 27
104 Bolivia 12790 A 27 27
105 Bolivia 12791 A 27 27
106 Bolivia 12792 A 27 27
107 Bolivia 12793 G 27 27
108 Bolivia 12794 G 27 27
109 Bolivia 12795 G 27 27
110 Bolivia 12796 A 27 27
111 Bolivia 12797 G 27 27
112 Bolivia 12798 G 27 27
113 Bolivia 12799 T 27 27
114 Bolivia 12800 A 27 27
115 Bolivia 12801 G 27 27
116 Bolivia 12802 G 27 27
117 Bolivia 12803 T 27 27
118 Bolivia 12804 T 27 27
119 Bolivia 12805 T 27 27
120 Bolivia 12806 G 27 27
121 Bolivia 12807 T 27 27
122 Bolivia 12808 A 27 27
123 Bolivia 12809 C 27 27
124 Bolivia 12810 T 27 27
125 Bolivia 12811 T 27 27
126 Bolivia 12812 G 27 27
127 Bolivia 12813 C 27 27
128 Bolivia 12814 A 27 27
129 Bolivia 12815 C 27 27
130 Bolivia 12816 T 27 27
131 Bolivia 12817 G 27 27
132 Bolivia 12818 T 27 27
133 Bolivia 12819 T 27 27
134 Bolivia 12820 A 27 27
135 Bolivia 12821 T 27 27
136 Bolivia 12822 C 27 27
137 Bolivia 12823 C 27 27
138 Bolivia 12824 G 27 27
139 Bolivia 12825 A 27 27
140 Bolivia 12826 T 27 27
141 Bolivia 12827 T 27 27
142 Bolivia 12828 T 27 27
143 Bolivia 12829 A 27 27
144 Bolivia 12830 C 27 27
145 Bolivia 12831 A 27 27
146 Bolivia 12832 G 27 27
147 Bolivia 12833 G 27 27
148 Bolivia 12834 A 27 27
149 Bolivia 12835 T 27 27
150 Bolivia 12836 T 27 27
151 Bolivia 12837 T 27 27
152 Bolivia 12838 G 27 27
153 Bolivia 12839 A 27 27
154 Bolivia 12840 A 27 27
155 Bolivia 12841 A 27 27
156 Bolivia 12842 T 27 27
157 Bolivia 12843 G 27 27
158 Bolivia 12844 G 27 27
159 Bolivia 12845 G 27 27
160 Bolivia 12846 C 27 27
161 Bolivia 12847 T 27 27
162 Bolivia 12848 A 27 27
163 Bolivia 12849 G 27 27
164 Bolivia 12850 A 27 27
165 Bolivia 12851 T 27 27
166 Bolivia 12852 T 27 27
167 Bolivia 12853 C 27 27
168 Bolivia 12854 C 27 27
169 Bolivia 12855 C 27 27
170 Bolivia 12856 T 27 27
171 Bolivia 12857 A 27 27
172 Bolivia 12858 A 27 27
173 Bolivia 12859 G 27 27
174 Bolivia 12860 A 27 27
175 Bolivia 12861 G 27 27
176 Bolivia 12862 T 27 27
177 Bolivia 12863 G 27 27
178 Bolivia 12864 A 27 27
179 Bolivia 12865 T 27 27
180 Bolivia 12866 G 27 27
181 Bolivia 12867 G 27 27
182 Bolivia 12868 A 27 27
183 Bolivia 12869 A 27 27
184 Bolivia 12870 C 27 27
185 Bolivia 12871 T 27 27
186 Bolivia 12872 G 27 27
187 Bolivia 12873 G 27 27
188 Bolivia 12874 T 27 27
189 Bolivia 12875 A 27 27
190 Bolivia 12876 C 27 27
191 Bolivia 12877 T 27 27
192 Bolivia 12878 A 27 27
193 Bolivia 12879 T 27 27
194 Bolivia 12880 C 27 27
195 Bolivia 12881 T 27 27
196 Bolivia 12882 A 27 27
197 Bolivia 12883 T 27 27
198 Bolivia 12884 A 27 27
199 Bolivia 12885 C 27 27
200 Bolivia 12886 A 27 27
201 Bolivia 12887 G 27 27
202 Bolivia 12888 A 27 27
203 Bolivia 12889 A 27 27
204 Bolivia 12890 C 27 27
205 Bolivia 12891 T 27 27
206 Bolivia 12892 G 27 27
207 Bolivia 12893 G 27 27
208 Bolivia 12894 A 27 27
209 Bolivia 12895 A 27 27
210 Bolivia 12896 C 27 27
211 Bolivia 12897 C 27 27
212 Bolivia 12898 A 27 27
213 Bolivia 12899 C 27 27
214 Bolivia 12900 C 27 27
215 Bolivia 12901 T 27 27
216 Bolivia 12902 T 27 27
217 Bolivia 12903 G 27 27
218 Bolivia 12904 T 27 27
219 Bolivia 12905 A 27 27
220 Bolivia 12906 G 27 27
221 Bolivia 12907 G 27 27
222 Bolivia 12908 T 27 27
223 Bolivia 12909 T 27 27
224 Bolivia 12910 T 27 27
225 Bolivia 12911 G 27 27
226 Bolivia 12912 T 27 27
227 Bolivia 12913 T 27 27
228 Bolivia 12914 A 27 27
229 Bolivia 12915 C 27 27
230 Bolivia 12916 A 27 27
231 Bolivia 12917 G 27 27
232 Bolivia 12918 A 27 27
233 Bolivia 12919 C 27 27
234 Bolivia 12920 A 27 27
235 Bolivia 12921 C 27 27
236 Bolivia 12922 A 27 27
237 Bolivia 12923 C 27 27
238 Bolivia 12924 C 27 27
239 Bolivia 12925 T 27 27
240 Bolivia 12926 A 27 27
241 Bolivia 12927 A 27 27
242 Bolivia 12928 A 27 27
243 Bolivia 12929 G 27 27
244 Bolivia 12930 G 27 27
245 Bolivia 12931 T 27 27
246 Bolivia 12932 C 27 27
247 Bolivia 12933 C 27 27
248 Bolivia 12934 T 27 27
249 Bolivia 12935 A 27 27
250 Bolivia 12936 A 27 27
251 Bolivia 12937 A 27 27
252 Bolivia 12938 G 27 27
253 Bolivia 12939 T 27 27
254 Bolivia 12940 G 27 27
255 Bolivia 12941 A 27 27
256 Bolivia 12942 A 27 27
257 Bolivia 12943 G 27 27
258 Bolivia 12944 T 27 27
259 Bolivia 12945 A 27 27
260 Bolivia 12946 T 27 27
261 Bolivia 12947 T 27 27
262 Bolivia 12948 T 27 27
263 Bolivia 12949 A 27 27
264 Bolivia 12950 T 27 27
265 Bolivia 12951 A 27 27
266 Bolivia 12952 C 27 27
267 Bolivia 12953 T 27 27
268 Bolivia 12954 T 27 27
269 Bolivia 12955 T 27 27
270 Bolivia 12956 A 27 27
271 Bolivia 12957 T 27 27
272 Bolivia 12958 T 27 27
273 Bolivia 12959 A 27 27
274 Bolivia 12960 A 27 27
275 Bolivia 12961 A 27 27
276 Bolivia 12962 G 27 27
277 Bolivia 12963 G 27 27
278 Bolivia 12964 A 27 27
279 Bolivia 12965 T 27 27
280 Bolivia 12966 T 27 27
281 Bolivia 12967 A 27 27
282 Bolivia 12968 A 27 27
283 Bolivia 12969 A 27 27
284 Bolivia 12970 C 27 27
285 Bolivia 12971 A 27 27
286 Bolivia 12972 A 27 27
287 Bolivia 12973 C 27 27
288 Bolivia 12974 C 27 27
289 Bolivia 12975 T 27 27
290 Bolivia 12976 A 27 27
291 Bolivia 12977 A 27 27
292 Bolivia 12978 A 27 27
293 Bolivia 12979 T 27 27
294 Bolivia 12980 A 27 27
295 Bolivia 12981 G 27 27
296 Bolivia 12982 A 27 27
297 Bolivia 12983 G 27 27
298 Bolivia 12984 G 27 27
299 Bolivia 12985 T 27 27
300 Bolivia 12986 A 27 27
301 Bolivia 12987 T 27 27
302 Bolivia 12988 G 27 27
303 Bolivia 12989 G 27 27
304 Bolivia 12990 T 27 27
305 Bolivia 12991 A 27 27
306 Bolivia 12992 C 27 27
307 Bolivia 12993 T 27 27
308 Bolivia 12994 T 27 27
309 Bolivia 12995 G 27 27
310 Bolivia 12996 G 27 27
311 Bolivia 12997 T 27 27
312 Bolivia 12998 A 27 27
313 Bolivia 12999 G 27 27
314 Bolivia 13000 T 27 27
315 Bolivia 13001 T 27 27
316 Bolivia 13002 T 27 27
317 Bolivia 13003 A 27 27
318 Bolivia 13004 G 27 27
319 Bolivia 13005 C 27 27
320 Bolivia 13006 T 27 27
321 Bolivia 13007 G 27 27
322 Bolivia 13008 C 27 27
323 Bolivia 13009 C 27 27
324 Bolivia 13010 A 27 27
325 Bolivia 13011 C 27 27
326 Bolivia 13012 A 27 27
327 Bolivia 13013 G 27 27
328 Bolivia 13014 T 27 27
329 Bolivia 13015 A 27 27
330 Bolivia 13016 C 27 27
331 Bolivia 13017 G 27 27
332 Bolivia 13018 T 27 27
333 Bolivia 13019 C 27 27
334 Bolivia 13020 T 27 27
335 Bolivia 13021 A 27 27
336 Bolivia 13022 C 27 27
337 Bolivia 13023 A 27 27
338 Bolivia 13024 A 27 27