National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                                    
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Benin 12686 A 12 12
1 Benin 12687 A 12 12
2 Benin 12688 T 12 12
3 Benin 12689 A 12 12
4 Benin 12690 A 12 12
5 Benin 12691 T 12 12
6 Benin 12692 G 12 12
7 Benin 12693 A 12 12
8 Benin 12694 G 12 12
9 Benin 12695 C 12 12
10 Benin 12696 T 12 12
11 Benin 12697 T 12 12
12 Benin 12698 A 12 12
13 Benin 12699 G 12 12
14 Benin 12700 T 12 12
15 Benin 12701 C 12 12
16 Benin 12702 C 12 12
17 Benin 12703 T 12 12
18 Benin 12704 G 12 12
19 Benin 12705 T 12 12
20 Benin 12706 T 12 12
21 Benin 12707 G 12 12
22 Benin 12708 C 12 12
23 Benin 12709 A 12 12
24 Benin 12710 C 12 12
25 Benin 12711 T 12 12
26 Benin 12712 A 12 12
27 Benin 12713 C 12 12
28 Benin 12714 G 12 12
29 Benin 12715 A 12 12
30 Benin 12716 C 12 12
31 Benin 12717 A 12 12
32 Benin 12718 G 12 12
33 Benin 12719 A 12 12
34 Benin 12720 T 12 12
35 Benin 12721 G 12 12
36 Benin 12722 T 12 12
37 Benin 12723 C 12 12
38 Benin 12724 T 12 12
39 Benin 12725 T 12 12
40 Benin 12726 G 12 12
41 Benin 12727 T 12 12
42 Benin 12728 G 12 12
43 Benin 12729 C 12 12
44 Benin 12730 T 12 12
45 Benin 12731 G 12 12
46 Benin 12732 C 12 12
47 Benin 12733 C 12 12
48 Benin 12734 G 12 12
49 Benin 12735 G 12 12
50 Benin 12736 T 12 12
51 Benin 12737 A 12 12
52 Benin 12738 C 12 12
53 Benin 12739 T 12 12
54 Benin 12740 A 12 12
55 Benin 12741 C 12 12
56 Benin 12742 A 12 12
57 Benin 12743 C 12 12
58 Benin 12744 A 12 12
59 Benin 12745 A 12 12
60 Benin 12746 A 12 12
61 Benin 12747 C 12 12
62 Benin 12748 T 12 12
63 Benin 12749 G 12 12
64 Benin 12750 C 12 12
65 Benin 12751 T 12 12
66 Benin 12752 T 12 12
67 Benin 12753 G 12 12
68 Benin 12754 C 12 12
69 Benin 12755 A 12 12
70 Benin 12756 C 12 12
71 Benin 12757 T 12 12
72 Benin 12758 G 12 12
73 Benin 12759 A 12 12
74 Benin 12760 T 12 12
75 Benin 12761 G 12 12
76 Benin 12762 A 12 12
77 Benin 12763 C 12 12
78 Benin 12764 A 12 12
79 Benin 12765 A 12 12
80 Benin 12766 T 12 12
81 Benin 12767 G 12 12
82 Benin 12768 C 12 12
83 Benin 12769 G 12 12
84 Benin 12770 T 12 12
85 Benin 12771 T 12 12
86 Benin 12772 A 12 12
87 Benin 12773 G 12 12
88 Benin 12774 C 12 12
89 Benin 12775 T 12 12
90 Benin 12776 T 12 12
91 Benin 12777 A 12 12
92 Benin 12778 C 12 12
93 Benin 12779 T 12 12
94 Benin 12780 A 12 12
95 Benin 12781 C 12 12
96 Benin 12782 A 12 12
97 Benin 12783 A 12 12
98 Benin 12784 C 12 12
99 Benin 12785 A 12 12
100 Benin 12786 C 12 12
101 Benin 12787 A 12 12
102 Benin 12788 A 12 12
103 Benin 12789 C 12 12
104 Benin 12790 A 12 12
105 Benin 12791 A 12 12
106 Benin 12792 A 12 12
107 Benin 12793 G 12 12
108 Benin 12794 G 12 12
109 Benin 12795 G 12 12
110 Benin 12796 A 12 12
111 Benin 12797 G 12 12
112 Benin 12798 G 12 12
113 Benin 12799 T 12 12
114 Benin 12800 A 12 12
115 Benin 12801 G 12 12
116 Benin 12802 G 12 12
117 Benin 12803 T 12 12
118 Benin 12804 T 12 12
119 Benin 12805 T 12 12
120 Benin 12806 G 12 12
121 Benin 12807 T 12 12
122 Benin 12808 A 12 12
123 Benin 12809 C 12 12
124 Benin 12810 T 12 12
125 Benin 12811 T 12 12
126 Benin 12812 G 12 12
127 Benin 12813 C 12 12
128 Benin 12814 A 12 12
129 Benin 12815 C 12 12
130 Benin 12816 T 12 12
131 Benin 12817 G 12 12
132 Benin 12818 T 12 12
133 Benin 12819 T 12 12
134 Benin 12820 A 12 12
135 Benin 12821 T 12 12
136 Benin 12822 C 12 12
137 Benin 12823 C 12 12
138 Benin 12824 G 12 12
139 Benin 12825 A 12 12
140 Benin 12826 T 12 12
141 Benin 12827 T 12 12
142 Benin 12828 T 12 12
143 Benin 12829 A 12 12
144 Benin 12830 C 12 12
145 Benin 12831 A 12 12
146 Benin 12832 G 12 12
147 Benin 12833 G 12 12
148 Benin 12834 A 12 12
149 Benin 12835 T 12 12
150 Benin 12836 T 12 12
151 Benin 12837 T 12 12
152 Benin 12838 G 12 12
153 Benin 12839 A 12 12
154 Benin 12840 A 12 12
155 Benin 12841 A 12 12
156 Benin 12842 T 12 12
157 Benin 12843 G 12 12
158 Benin 12844 G 12 12
159 Benin 12845 G 12 12
160 Benin 12846 C 12 12
161 Benin 12847 T 12 12
162 Benin 12848 A 12 12
163 Benin 12849 G 12 12
164 Benin 12850 A 12 12
165 Benin 12851 T 12 12
166 Benin 12852 T 12 12
167 Benin 12853 C 12 12
168 Benin 12854 C 12 12
169 Benin 12855 C 12 12
170 Benin 12856 T 12 12
171 Benin 12857 A 12 12
172 Benin 12858 A 12 12
173 Benin 12859 G 12 12
174 Benin 12860 A 12 12
175 Benin 12861 G 12 12
176 Benin 12862 T 12 12
177 Benin 12863 G 12 12
178 Benin 12864 A 12 12
179 Benin 12865 T 12 12
180 Benin 12866 G 12 12
181 Benin 12867 G 12 12
182 Benin 12868 A 12 12
183 Benin 12869 A 12 12
184 Benin 12870 C 12 12
185 Benin 12871 T 12 12
186 Benin 12872 G 12 12
187 Benin 12873 G 12 12
188 Benin 12874 T 12 12
189 Benin 12875 A 12 12
190 Benin 12876 C 12 12
191 Benin 12877 T 12 12
192 Benin 12878 A 12 12
193 Benin 12879 T 12 12
194 Benin 12880 C 12 12
195 Benin 12881 T 12 12
196 Benin 12882 A 12 12
197 Benin 12883 T 12 12
198 Benin 12884 A 12 12
199 Benin 12885 C 12 12
200 Benin 12886 A 12 12
201 Benin 12887 G 12 12
202 Benin 12888 A 12 12
203 Benin 12889 A 12 12
204 Benin 12890 C 12 12
205 Benin 12891 T 12 12
206 Benin 12892 G 12 12
207 Benin 12893 G 12 12
208 Benin 12894 A 12 12
209 Benin 12895 A 12 12
210 Benin 12896 C 12 12
211 Benin 12897 C 12 12
212 Benin 12898 A 12 12
213 Benin 12899 C 12 12
214 Benin 12900 C 12 12
215 Benin 12901 T 12 12
216 Benin 12902 T 12 12
217 Benin 12903 G 12 12
218 Benin 12904 T 12 12
219 Benin 12905 A 12 12
220 Benin 12906 G 12 12
221 Benin 12907 G 12 12
222 Benin 12908 T 12 12
223 Benin 12909 T 12 12
224 Benin 12910 T 12 12
225 Benin 12911 G 12 12
226 Benin 12912 T 12 12
227 Benin 12913 T 12 12
228 Benin 12914 A 12 12
229 Benin 12915 C 12 12
230 Benin 12916 A 12 12
231 Benin 12917 G 12 12
232 Benin 12918 A 12 12
233 Benin 12919 C 12 12
234 Benin 12920 A 12 12
235 Benin 12921 C 12 12
236 Benin 12922 A 12 12
237 Benin 12923 C 12 12
238 Benin 12924 C 12 12
239 Benin 12925 T 12 12
240 Benin 12926 A 12 12
241 Benin 12927 A 12 12
242 Benin 12928 A 12 12
243 Benin 12929 G 12 12
244 Benin 12930 G 12 12
245 Benin 12931 T 12 12
246 Benin 12932 C 12 12
247 Benin 12933 C 12 12
248 Benin 12934 T 12 12
249 Benin 12935 A 12 12
250 Benin 12936 A 12 12
251 Benin 12937 A 12 12
252 Benin 12938 G 12 12
253 Benin 12939 T 12 12
254 Benin 12940 G 12 12
255 Benin 12941 A 12 12
256 Benin 12942 A 12 12
257 Benin 12943 G 12 12
258 Benin 12944 T 12 12
259 Benin 12945 A 12 12
260 Benin 12946 T 12 12
261 Benin 12947 T 12 12
262 Benin 12948 T 12 12
263 Benin 12949 A 12 12
264 Benin 12950 T 12 12
265 Benin 12951 A 12 12
266 Benin 12952 C 12 12
267 Benin 12953 T 12 12
268 Benin 12954 T 12 12
269 Benin 12955 T 12 12
270 Benin 12956 A 12 12
271 Benin 12957 T 12 12
272 Benin 12958 T 12 12
273 Benin 12959 A 12 12
274 Benin 12960 A 12 12
275 Benin 12961 A 12 12
276 Benin 12962 G 12 12
277 Benin 12963 G 12 12
278 Benin 12964 A 12 12
279 Benin 12965 T 12 12
280 Benin 12966 T 12 12
281 Benin 12967 A 12 12
282 Benin 12968 A 12 12
283 Benin 12969 A 12 12
284 Benin 12970 C 12 12
285 Benin 12971 A 12 12
286 Benin 12972 A 12 12
287 Benin 12973 C 12 12
288 Benin 12974 C 12 12
289 Benin 12975 T 12 12
290 Benin 12976 A 12 12
291 Benin 12977 A 12 12
292 Benin 12978 A 12 12
293 Benin 12979 T 12 12
294 Benin 12980 A 12 12
295 Benin 12981 G 12 12
296 Benin 12982 A 12 12
297 Benin 12983 G 12 12
298 Benin 12984 G 12 12
299 Benin 12985 T 12 12
300 Benin 12986 A 12 12
301 Benin 12987 T 12 12
302 Benin 12988 G 12 12
303 Benin 12989 G 12 12
304 Benin 12990 T 12 12
305 Benin 12991 A 12 12
306 Benin 12992 C 12 12
307 Benin 12993 T 12 12
308 Benin 12994 T 12 12
309 Benin 12995 G 12 12
310 Benin 12996 G 12 12
311 Benin 12997 T 12 12
312 Benin 12998 A 12 12
313 Benin 12999 G 12 12
314 Benin 13000 T 12 12
315 Benin 13001 T 12 12
316 Benin 13002 T 12 12
317 Benin 13003 A 12 12
318 Benin 13004 G 12 12
319 Benin 13005 C 12 12
320 Benin 13006 T C 12 10 Ala4247Ala
321 Benin 13007 G 12 12
322 Benin 13008 C 12 12
323 Benin 13009 C 12 12
324 Benin 13010 A 12 12
325 Benin 13011 C 12 12
326 Benin 13012 A 12 12
327 Benin 13013 G 12 12
328 Benin 13014 T 12 12
329 Benin 13015 A 12 12
330 Benin 13016 C 12 12
331 Benin 13017 G 12 12
332 Benin 13018 T 12 12
333 Benin 13019 C 12 12
334 Benin 13020 T 12 12
335 Benin 13021 A 12 12
336 Benin 13022 C 12 12
337 Benin 13023 A 12 12
338 Benin 13024 A 12 12