National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30 1                                      
C   9   1                                    
D   18           1                            
E   9                                        
F   12                                        
G   27           1                            
H                                            
I   6               1                        
K   21                 2     2     2          
L   45         1         5                    
M   6               2                   1    
N   21                       3                
P   18                   3           2        
Q   12                 1                      
R   18                             2          
S   15                               1        
T   36 1             4 1     1                
V   18                                        
W   3                                        
Y   15             1                         2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Belgium 12686 A 3698 3698
1 Belgium 12687 A 3698 3698
2 Belgium 12688 T 3698 3698
3 Belgium 12689 A 3698 3698
4 Belgium 12690 A 3698 3698
5 Belgium 12691 T 3698 3698
6 Belgium 12692 G 3698 3698
7 Belgium 12693 A 3698 3698
8 Belgium 12694 G 3698 3698
9 Belgium 12695 C 3698 3698
10 Belgium 12696 T 3698 3698
11 Belgium 12697 T 3698 3698
12 Belgium 12698 A 3698 3698
13 Belgium 12699 G 3698 3698
14 Belgium 12700 T 3698 3698
15 Belgium 12701 C 3698 3698
16 Belgium 12702 C 3698 3698
17 Belgium 12703 T 3698 3698
18 Belgium 12704 G 3698 3698
19 Belgium 12705 T 3698 3698
20 Belgium 12706 T 3698 3698
21 Belgium 12707 G 3698 3698
22 Belgium 12708 C 3698 3698
23 Belgium 12709 A 3698 3698
24 Belgium 12710 C T 3698 3697 Leu4149Leu
25 Belgium 12711 T 3698 3698
26 Belgium 12712 A 3698 3698
27 Belgium 12713 C 3698 3698
28 Belgium 12714 G 3698 3698
29 Belgium 12715 A 3698 3698
30 Belgium 12716 C 3698 3698
31 Belgium 12717 A 3698 3698
32 Belgium 12718 G 3698 3698
33 Belgium 12719 A G 3698 3696 Met4152Val
34 Belgium 12720 T 3698 3698
35 Belgium 12721 G T 3698 3697 Met4152Ile
36 Belgium 12722 T 3698 3698
37 Belgium 12723 C 3698 3698
38 Belgium 12724 T 3698 3698
39 Belgium 12725 T 3698 3698
40 Belgium 12726 G 3698 3698
41 Belgium 12727 T 3698 3698
42 Belgium 12728 G 3698 3698
43 Belgium 12729 C 3698 3698
44 Belgium 12730 T 3698 3698
45 Belgium 12731 G 3698 3698
46 Belgium 12732 C 3698 3698
47 Belgium 12733 C 3700 3700
48 Belgium 12734 G 3700 3700
49 Belgium 12735 G 3700 3700
50 Belgium 12736 T 3700 3700
51 Belgium 12737 A 3700 3700
52 Belgium 12738 C 3700 3700
53 Belgium 12739 T 3700 3700
54 Belgium 12740 A 3700 3700
55 Belgium 12741 C 3700 3699
56 Belgium 12742 A 3700 3700
57 Belgium 12743 C A 3700 3699 Gln4160Lys
58 Belgium 12744 A 3700 3700
59 Belgium 12745 A 3700 3700
60 Belgium 12746 A 3700 3700
61 Belgium 12747 C A,T 3700 3673 Thr4161Asn-p.Thr4161Ile
62 Belgium 12748 T 3700 3700
63 Belgium 12749 G 3700 3700
64 Belgium 12750 C 3700 3700
65 Belgium 12751 T 3700 3700
66 Belgium 12752 T 3700 3700
67 Belgium 12753 G 3700 3700
68 Belgium 12754 C T 3700 3699 Cys4163Cys
69 Belgium 12755 A G 3700 3695 Thr4164Ala
70 Belgium 12756 C T 3700 3699 Thr4164Ile
71 Belgium 12757 T 3700 3700
72 Belgium 12758 G 3700 3700
73 Belgium 12759 A G 3700 3694 Asp4165Gly
74 Belgium 12760 T 3700 3700
75 Belgium 12761 G 3700 3700
76 Belgium 12762 A 3700 3700
77 Belgium 12763 C 3700 3700
78 Belgium 12764 A 3700 3700
79 Belgium 12765 A 3700 3700
80 Belgium 12766 T C 3699 3697 Asn4167Asn
81 Belgium 12767 G 3699 3699
82 Belgium 12768 C 3699 3699
83 Belgium 12769 G T 3699 3694 Ala4168Ala
84 Belgium 12770 T 3699 3699
85 Belgium 12771 T 3699 3699
86 Belgium 12772 A 3699 3699
87 Belgium 12773 G 3699 3699
88 Belgium 12774 C 3699 3699
89 Belgium 12775 T 3699 3699
90 Belgium 12776 T 3699 3699
91 Belgium 12777 A 3699 3699
92 Belgium 12778 C T 3699 3698 Tyr4171Tyr
93 Belgium 12779 T 3699 3699
94 Belgium 12780 A 3697 3697
95 Belgium 12781 C T 3697 3696 Tyr4172Tyr
96 Belgium 12782 A 3697 3697
97 Belgium 12783 A 3697 3697
98 Belgium 12784 C 3697 3697
99 Belgium 12785 A 3697 3697
100 Belgium 12786 C 3697 3697
101 Belgium 12787 A 3697 3697
102 Belgium 12788 A 3697 3697
103 Belgium 12789 C T,A 3697 3684 Thr4175Ile-p.Thr4175Lys
104 Belgium 12790 A 3697 3697
105 Belgium 12791 A 3697 3697
106 Belgium 12792 A G 3697 3687 Lys4176Arg
107 Belgium 12793 G T,A 3697 3693 Lys4176Asn-p.Lys4176Lys
108 Belgium 12794 G 3697 3697
109 Belgium 12795 G 3697 3697
110 Belgium 12796 A 3697 3697
111 Belgium 12797 G 3697 3697
112 Belgium 12798 G 3697 3697
113 Belgium 12799 T 3697 3697
114 Belgium 12800 A 3697 3697
115 Belgium 12801 G 3697 3697
116 Belgium 12802 G 3697 3697
117 Belgium 12803 T 3697 3697
118 Belgium 12804 T 3697 3697
119 Belgium 12805 T 3697 3697
120 Belgium 12806 G 3697 3697
121 Belgium 12807 T 3697 3697
122 Belgium 12808 A 3697 3697
123 Belgium 12809 C T 3697 3688 Leu4182Phe
124 Belgium 12810 T 3697 3697
125 Belgium 12811 T C 3697 3696 Leu4182Leu
126 Belgium 12812 G 3697 3697
127 Belgium 12813 C 3697 3697
128 Belgium 12814 A 3697 3697
129 Belgium 12815 C T 3697 3695 Leu4184Leu
130 Belgium 12816 T 3697 3697
131 Belgium 12817 G 3697 3697
132 Belgium 12818 T 3697 3697
133 Belgium 12819 T 3697 3697
134 Belgium 12820 A 3697 3697
135 Belgium 12821 T 3697 3697
136 Belgium 12822 C 3697 3697
137 Belgium 12823 C T 3697 3692 Ser4186Ser
138 Belgium 12824 G 3697 3697
139 Belgium 12825 A 3697 3697
140 Belgium 12826 T 3697 3697
141 Belgium 12827 T 3697 3697
142 Belgium 12828 T 3697 3697
143 Belgium 12829 A G 3697 3696 Leu4188Leu
144 Belgium 12830 C 3697 3697
145 Belgium 12831 A 3697 3697
146 Belgium 12832 G 3697 3697
147 Belgium 12833 G 3697 3697
148 Belgium 12834 A 3697 3697
149 Belgium 12835 T 3697 3697
150 Belgium 12836 T 3697 3697
151 Belgium 12837 T 3697 3697
152 Belgium 12838 G 3697 3697
153 Belgium 12839 A 3697 3697
154 Belgium 12840 A 3697 3697
155 Belgium 12841 A G 3697 3696 Lys4192Lys
156 Belgium 12842 T 3697 3697
157 Belgium 12843 G 3697 3697
158 Belgium 12844 G 3697 3697
159 Belgium 12845 G 3697 3697
160 Belgium 12846 C 3697 3697
161 Belgium 12847 T 3697 3697
162 Belgium 12848 A 3697 3697
163 Belgium 12849 G 3697 3697
164 Belgium 12850 A G 3697 3696 Arg4195Arg
165 Belgium 12851 T 3697 3697
166 Belgium 12852 T 3697 3697
167 Belgium 12853 C 3697 3697
168 Belgium 12854 C 3697 3697
169 Belgium 12855 C 3697 3697
170 Belgium 12856 T 3697 3697
171 Belgium 12857 A 3697 3697
172 Belgium 12858 A G 3697 3696 Lys4198Arg
173 Belgium 12859 G 3697 3697
174 Belgium 12860 A 3697 3697
175 Belgium 12861 G 3697 3697
176 Belgium 12862 T 3697 3697
177 Belgium 12863 G 3697 3697
178 Belgium 12864 A 3697 3697
179 Belgium 12865 T 3697 3697
180 Belgium 12866 G 3697 3697
181 Belgium 12867 G 3697 3697
182 Belgium 12868 A G 3697 3696 Gly4201Gly
183 Belgium 12869 A 3697 3697
184 Belgium 12870 C 3697 3697
185 Belgium 12871 T 3697 3697
186 Belgium 12872 G 3697 3697
187 Belgium 12873 G 3697 3697
188 Belgium 12874 T 3697 3697
189 Belgium 12875 A 3697 3697
190 Belgium 12876 C 3697 3697
191 Belgium 12877 T 3697 3697
192 Belgium 12878 A 3697 3697
193 Belgium 12879 T 3697 3697
194 Belgium 12880 C T 3697 3694 Ile4205Ile
195 Belgium 12881 T C 3697 3696 Tyr4206His
196 Belgium 12882 A 3697 3697
197 Belgium 12883 T 3697 3697
198 Belgium 12884 A 3697 3697
199 Belgium 12885 C 3697 3697
200 Belgium 12886 A 3697 3697
201 Belgium 12887 G 3697 3697
202 Belgium 12888 A 3697 3697
203 Belgium 12889 A 3697 3697
204 Belgium 12890 C 3697 3697
205 Belgium 12891 T 3697 3697
206 Belgium 12892 G 3697 3697
207 Belgium 12893 G 3697 3697
208 Belgium 12894 A 3697 3697
209 Belgium 12895 A 3697 3697
210 Belgium 12896 C T 3697 3696 Pro4211Ser
211 Belgium 12897 C T 3697 3693 Pro4211Leu
212 Belgium 12898 A 3697 3697
213 Belgium 12899 C 3697 3697
214 Belgium 12900 C 3697 3697
215 Belgium 12901 T 3697 3697
216 Belgium 12902 T 3697 3697
217 Belgium 12903 G 3697 3697
218 Belgium 12904 T 3697 3697
219 Belgium 12905 A 3697 3697
220 Belgium 12906 G 3697 3697
221 Belgium 12907 G 3697 3697
222 Belgium 12908 T 3697 3697
223 Belgium 12909 T 3697 3697
224 Belgium 12910 T 3697 3697
225 Belgium 12911 G 3697 3697
226 Belgium 12912 T 3697 3697
227 Belgium 12913 T 3697 3697
228 Belgium 12914 A 3697 3697
229 Belgium 12915 C 3697 3697
230 Belgium 12916 A 3697 3697
231 Belgium 12917 G 3697 3697
232 Belgium 12918 A 3697 3697
233 Belgium 12919 C 3697 3697
234 Belgium 12920 A 3697 3697
235 Belgium 12921 C 3697 3697
236 Belgium 12922 A 3697 3697
237 Belgium 12923 C T 3697 3695 Pro4220Ser
238 Belgium 12924 C T 3697 3696 Pro4220Leu
239 Belgium 12925 T 3697 3697
240 Belgium 12926 A 3697 3697
241 Belgium 12927 A 3697 3697
242 Belgium 12928 A 3697 3697
243 Belgium 12929 G 3697 3697
244 Belgium 12930 G 3697 3697
245 Belgium 12931 T 3697 3697
246 Belgium 12932 C 3697 3697
247 Belgium 12933 C T 3697 3695 Pro4223Leu
248 Belgium 12934 T 3697 3697
249 Belgium 12935 A 3697 3697
250 Belgium 12936 A 3697 3697
251 Belgium 12937 A 3697 3697
252 Belgium 12938 G 3697 3697
253 Belgium 12939 T 3697 3697
254 Belgium 12940 G 3697 3697
255 Belgium 12941 A 3697 3697
256 Belgium 12942 A 3697 3697
257 Belgium 12943 G 3697 3697
258 Belgium 12944 T 3697 3697
259 Belgium 12945 A 3697 3697
260 Belgium 12946 T 3697 3697
261 Belgium 12947 T 3697 3697
262 Belgium 12948 T 3697 3697
263 Belgium 12949 A 3697 3697
264 Belgium 12950 T 3697 3697
265 Belgium 12951 A 3697 3697
266 Belgium 12952 C 3697 3697
267 Belgium 12953 T 3697 3697
268 Belgium 12954 T 3697 3697
269 Belgium 12955 T 3697 3697
270 Belgium 12956 A 3697 3697
271 Belgium 12957 T 3697 3697
272 Belgium 12958 T 3697 3697
273 Belgium 12959 A 3697 3697
274 Belgium 12960 A 3697 3697
275 Belgium 12961 A T 3697 3696 Lys4232Asn
276 Belgium 12962 G 3697 3697
277 Belgium 12963 G 3697 3697
278 Belgium 12964 A 3697 3697
279 Belgium 12965 T 3697 3697
280 Belgium 12966 T 3697 3697
281 Belgium 12967 A 3697 3697
282 Belgium 12968 A 3697 3697
283 Belgium 12969 A 3697 3697
284 Belgium 12970 C T 3697 3675 Asn4235Asn
285 Belgium 12971 A 3697 3697
286 Belgium 12972 A 3697 3697
287 Belgium 12973 C T 3697 3696 Asn4236Asn
288 Belgium 12974 C 3697 3697
289 Belgium 12975 T 3697 3697
290 Belgium 12976 A 3697 3697
291 Belgium 12977 A 3697 3697
292 Belgium 12978 A 3697 3697
293 Belgium 12979 T 3697 3697
294 Belgium 12980 A 3697 3697
295 Belgium 12981 G 3697 3697
296 Belgium 12982 A G 3697 3696 Arg4239Arg
297 Belgium 12983 G 3697 3697
298 Belgium 12984 G 3697 3697
299 Belgium 12985 T 3697 3697
300 Belgium 12986 A 3697 3697
301 Belgium 12987 T 3697 3697
302 Belgium 12988 G T 3697 3649 Met4241Ile
303 Belgium 12989 G 3697 3697
304 Belgium 12990 T 3697 3697
305 Belgium 12991 A 3697 3697
306 Belgium 12992 C 3697 3697
307 Belgium 12993 T 3697 3697
308 Belgium 12994 T 3697 3697
309 Belgium 12995 G 3697 3697
310 Belgium 12996 G 3697 3697
311 Belgium 12997 T 3697 3697
312 Belgium 12998 A 3697 3697
313 Belgium 12999 G 3697 3697
314 Belgium 13000 T 3697 3697
315 Belgium 13001 T 3697 3697
316 Belgium 13002 T 3697 3697
317 Belgium 13003 A 3697 3697
318 Belgium 13004 G 3697 3697
319 Belgium 13005 C 3697 3697
320 Belgium 13006 T 3697 3697
321 Belgium 13007 G 3697 3697
322 Belgium 13008 C 3697 3697
323 Belgium 13009 C 3697 3697
324 Belgium 13010 A 3697 3697
325 Belgium 13011 C T 3697 3696 Thr4249Ile
326 Belgium 13012 A 3697 3697
327 Belgium 13013 G 3697 3697
328 Belgium 13014 T 3697 3697
329 Belgium 13015 A 3697 3697
330 Belgium 13016 C 3697 3697
331 Belgium 13017 G 3697 3697
332 Belgium 13018 T 3697 3697
333 Belgium 13019 C T 3697 3694 Leu4252Leu
334 Belgium 13020 T 3697 3697
335 Belgium 13021 A 3697 3697
336 Belgium 13022 C 3697 3697
337 Belgium 13023 A 3697 3697
338 Belgium 13024 A 3697 3697