National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18     1                                
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                               1      
L   45                 3                    
M   6                                      
N   21                     1                
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36             1                        
V   18                                      
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bangladesh 12686 A 662 662
1 Bangladesh 12687 A 662 662
2 Bangladesh 12688 T 662 662
3 Bangladesh 12689 A 662 662
4 Bangladesh 12690 A 662 662
5 Bangladesh 12691 T 662 661
6 Bangladesh 12692 G 662 662
7 Bangladesh 12693 A 662 662
8 Bangladesh 12694 G 662 661
9 Bangladesh 12695 C 662 661
10 Bangladesh 12696 T 662 662
11 Bangladesh 12697 T 662 662
12 Bangladesh 12698 A 662 662
13 Bangladesh 12699 G 662 662
14 Bangladesh 12700 T 662 662
15 Bangladesh 12701 C 662 662
16 Bangladesh 12702 C 662 662
17 Bangladesh 12703 T 662 662
18 Bangladesh 12704 G 662 662
19 Bangladesh 12705 T 662 662
20 Bangladesh 12706 T 662 662
21 Bangladesh 12707 G 662 662
22 Bangladesh 12708 C 662 662
23 Bangladesh 12709 A 662 662
24 Bangladesh 12710 C 662 662
25 Bangladesh 12711 T 662 662
26 Bangladesh 12712 A 662 662
27 Bangladesh 12713 C 662 662
28 Bangladesh 12714 G 662 662
29 Bangladesh 12715 A 662 662
30 Bangladesh 12716 C 662 662
31 Bangladesh 12717 A 662 662
32 Bangladesh 12718 G 662 662
33 Bangladesh 12719 A 662 662
34 Bangladesh 12720 T 662 662
35 Bangladesh 12721 G 662 662
36 Bangladesh 12722 T 662 662
37 Bangladesh 12723 C 662 662
38 Bangladesh 12724 T 662 662
39 Bangladesh 12725 T 662 662
40 Bangladesh 12726 G 662 662
41 Bangladesh 12727 T 662 662
42 Bangladesh 12728 G 662 662
43 Bangladesh 12729 C 662 662
44 Bangladesh 12730 T 662 662
45 Bangladesh 12731 G 662 662
46 Bangladesh 12732 C 662 662
47 Bangladesh 12733 C 671 671
48 Bangladesh 12734 G 671 671
49 Bangladesh 12735 G 671 671
50 Bangladesh 12736 T 671 671
51 Bangladesh 12737 A 671 671
52 Bangladesh 12738 C 671 671
53 Bangladesh 12739 T 671 671
54 Bangladesh 12740 A 671 671
55 Bangladesh 12741 C 671 671
56 Bangladesh 12742 A 671 671
57 Bangladesh 12743 C 671 671
58 Bangladesh 12744 A 671 671
59 Bangladesh 12745 A 671 671
60 Bangladesh 12746 A 671 671
61 Bangladesh 12747 C T 671 670 Thr4161Ile
62 Bangladesh 12748 T 671 671
63 Bangladesh 12749 G 671 671
64 Bangladesh 12750 C 671 670
65 Bangladesh 12751 T 671 670
66 Bangladesh 12752 T 671 670
67 Bangladesh 12753 G 671 670
68 Bangladesh 12754 C 671 670
69 Bangladesh 12755 A 671 670
70 Bangladesh 12756 C 671 670
71 Bangladesh 12757 T 671 670
72 Bangladesh 12758 G 671 670
73 Bangladesh 12759 A 671 670
74 Bangladesh 12760 T 671 670
75 Bangladesh 12761 G 671 670
76 Bangladesh 12762 A 671 670
77 Bangladesh 12763 C T 672 669 Asp4166Asp
78 Bangladesh 12764 A 672 671
79 Bangladesh 12765 A 672 671
80 Bangladesh 12766 T 672 671
81 Bangladesh 12767 G 672 671
82 Bangladesh 12768 C 672 671
83 Bangladesh 12769 G 672 671
84 Bangladesh 12770 T 672 670
85 Bangladesh 12771 T 672 670
86 Bangladesh 12772 A G 672 669 Leu4169Leu
87 Bangladesh 12773 G 672 670
88 Bangladesh 12774 C 672 670
89 Bangladesh 12775 T 672 670
90 Bangladesh 12776 T 672 670
91 Bangladesh 12777 A 672 670
92 Bangladesh 12778 C 672 671
93 Bangladesh 12779 T 672 671
94 Bangladesh 12780 A 668 667
95 Bangladesh 12781 C T 668 666 Tyr4172Tyr
96 Bangladesh 12782 A 668 667
97 Bangladesh 12783 A 668 667
98 Bangladesh 12784 C T 668 666 Asn4173Asn
99 Bangladesh 12785 A 668 667
100 Bangladesh 12786 C 668 668
101 Bangladesh 12787 A 668 668
102 Bangladesh 12788 A 668 668
103 Bangladesh 12789 C 668 668
104 Bangladesh 12790 A 668 668
105 Bangladesh 12791 A 668 668
106 Bangladesh 12792 A 668 668
107 Bangladesh 12793 G 668 668
108 Bangladesh 12794 G 668 668
109 Bangladesh 12795 G 668 668
110 Bangladesh 12796 A 668 668
111 Bangladesh 12797 G 668 668
112 Bangladesh 12798 G 668 668
113 Bangladesh 12799 T 668 667
114 Bangladesh 12800 A 668 668
115 Bangladesh 12801 G 668 668
116 Bangladesh 12802 G 668 668
117 Bangladesh 12803 T 668 668
118 Bangladesh 12804 T 668 668
119 Bangladesh 12805 T 668 668
120 Bangladesh 12806 G 668 668
121 Bangladesh 12807 T 668 668
122 Bangladesh 12808 A 668 668
123 Bangladesh 12809 C 668 668
124 Bangladesh 12810 T 669 669
125 Bangladesh 12811 T 669 669
126 Bangladesh 12812 G 669 669
127 Bangladesh 12813 C 669 669
128 Bangladesh 12814 A 669 669
129 Bangladesh 12815 C 669 669
130 Bangladesh 12816 T 669 669
131 Bangladesh 12817 G T 669 668 Leu4184Leu
132 Bangladesh 12818 T 669 668
133 Bangladesh 12819 T 669 669
134 Bangladesh 12820 A 669 669
135 Bangladesh 12821 T 669 669
136 Bangladesh 12822 C 669 669
137 Bangladesh 12823 C 669 669
138 Bangladesh 12824 G 669 669
139 Bangladesh 12825 A 669 669
140 Bangladesh 12826 T 669 669
141 Bangladesh 12827 T 669 669
142 Bangladesh 12828 T 669 669
143 Bangladesh 12829 A 669 669
144 Bangladesh 12830 C 669 669
145 Bangladesh 12831 A 669 669
146 Bangladesh 12832 G 669 669
147 Bangladesh 12833 G 669 669
148 Bangladesh 12834 A 669 669
149 Bangladesh 12835 T 669 669
150 Bangladesh 12836 T 669 669
151 Bangladesh 12837 T 669 669
152 Bangladesh 12838 G 669 669
153 Bangladesh 12839 A 669 669
154 Bangladesh 12840 A 669 669
155 Bangladesh 12841 A 669 668
156 Bangladesh 12842 T 669 669
157 Bangladesh 12843 G 669 669
158 Bangladesh 12844 G 669 669
159 Bangladesh 12845 G 669 669
160 Bangladesh 12846 C 669 669
161 Bangladesh 12847 T 669 669
162 Bangladesh 12848 A 669 668
163 Bangladesh 12849 G 669 668
164 Bangladesh 12850 A 669 668
165 Bangladesh 12851 T 669 668
166 Bangladesh 12852 T 669 668
167 Bangladesh 12853 C 669 668
168 Bangladesh 12854 C 669 668
169 Bangladesh 12855 C 669 668
170 Bangladesh 12856 T 669 668
171 Bangladesh 12857 A 669 668
172 Bangladesh 12858 A 669 668
173 Bangladesh 12859 G 669 668
174 Bangladesh 12860 A 669 668
175 Bangladesh 12861 G 669 668
176 Bangladesh 12862 T 668 666
177 Bangladesh 12863 G 668 666
178 Bangladesh 12864 A 668 667
179 Bangladesh 12865 T 668 667
180 Bangladesh 12866 G 668 667
181 Bangladesh 12867 G 668 667
182 Bangladesh 12868 A 668 667
183 Bangladesh 12869 A 668 667
184 Bangladesh 12870 C 668 668
185 Bangladesh 12871 T 668 668
186 Bangladesh 12872 G 668 668
187 Bangladesh 12873 G 668 668
188 Bangladesh 12874 T 668 668
189 Bangladesh 12875 A 668 668
190 Bangladesh 12876 C 668 668
191 Bangladesh 12877 T 668 668
192 Bangladesh 12878 A 668 668
193 Bangladesh 12879 T 668 668
194 Bangladesh 12880 C 668 668
195 Bangladesh 12881 T 668 668
196 Bangladesh 12882 A 669 669
197 Bangladesh 12883 T 669 669
198 Bangladesh 12884 A 669 669
199 Bangladesh 12885 C 669 669
200 Bangladesh 12886 A 669 669
201 Bangladesh 12887 G 669 669
202 Bangladesh 12888 A 669 669
203 Bangladesh 12889 A 669 669
204 Bangladesh 12890 C 669 669
205 Bangladesh 12891 T 669 669
206 Bangladesh 12892 G 669 669
207 Bangladesh 12893 G 669 669
208 Bangladesh 12894 A 669 669
209 Bangladesh 12895 A 669 669
210 Bangladesh 12896 C 669 669
211 Bangladesh 12897 C 669 669
212 Bangladesh 12898 A 669 669
213 Bangladesh 12899 C 669 669
214 Bangladesh 12900 C 669 669
215 Bangladesh 12901 T 669 669
216 Bangladesh 12902 T 669 669
217 Bangladesh 12903 G 669 669
218 Bangladesh 12904 T 669 669
219 Bangladesh 12905 A 669 669
220 Bangladesh 12906 G 669 669
221 Bangladesh 12907 G 669 669
222 Bangladesh 12908 T 669 669
223 Bangladesh 12909 T 669 669
224 Bangladesh 12910 T 669 669
225 Bangladesh 12911 G 669 669
226 Bangladesh 12912 T 669 669
227 Bangladesh 12913 T 669 669
228 Bangladesh 12914 A 669 669
229 Bangladesh 12915 C 669 669
230 Bangladesh 12916 A 669 669
231 Bangladesh 12917 G 669 669
232 Bangladesh 12918 A 669 669
233 Bangladesh 12919 C 669 669
234 Bangladesh 12920 A 669 669
235 Bangladesh 12921 C 669 669
236 Bangladesh 12922 A 669 669
237 Bangladesh 12923 C 669 669
238 Bangladesh 12924 C 669 669
239 Bangladesh 12925 T 669 656
240 Bangladesh 12926 A 669 669
241 Bangladesh 12927 A 669 669
242 Bangladesh 12928 A 669 669
243 Bangladesh 12929 G 669 669
244 Bangladesh 12930 G 669 669
245 Bangladesh 12931 T 669 669
246 Bangladesh 12932 C 669 669
247 Bangladesh 12933 C 669 669
248 Bangladesh 12934 T 669 669
249 Bangladesh 12935 A 669 669
250 Bangladesh 12936 A C 669 668 Lys4224Thr
251 Bangladesh 12937 A 669 669
252 Bangladesh 12938 G 669 669
253 Bangladesh 12939 T 669 668
254 Bangladesh 12940 G 669 668
255 Bangladesh 12941 A 669 668
256 Bangladesh 12942 A 669 668
257 Bangladesh 12943 G 669 668
258 Bangladesh 12944 T 669 668
259 Bangladesh 12945 A 669 668
260 Bangladesh 12946 T 669 668
261 Bangladesh 12947 T 669 668
262 Bangladesh 12948 T 669 668
263 Bangladesh 12949 A 669 668
264 Bangladesh 12950 T 669 668
265 Bangladesh 12951 A 669 667
266 Bangladesh 12952 C 669 667
267 Bangladesh 12953 T 669 667
268 Bangladesh 12954 T 669 666
269 Bangladesh 12955 T 669 666
270 Bangladesh 12956 A 669 666
271 Bangladesh 12957 T 669 666
272 Bangladesh 12958 T 669 666
273 Bangladesh 12959 A 669 666
274 Bangladesh 12960 A 669 666
275 Bangladesh 12961 A 669 666
276 Bangladesh 12962 G 669 667
277 Bangladesh 12963 G 669 667
278 Bangladesh 12964 A 669 667
279 Bangladesh 12965 T 669 667
280 Bangladesh 12966 T 669 667
281 Bangladesh 12967 A 669 668
282 Bangladesh 12968 A 669 668
283 Bangladesh 12969 A 669 668
284 Bangladesh 12970 C 669 669
285 Bangladesh 12971 A 668 668
286 Bangladesh 12972 A 668 668
287 Bangladesh 12973 C 668 667
288 Bangladesh 12974 C T 668 666 Leu4237Leu
289 Bangladesh 12975 T 668 667
290 Bangladesh 12976 A 668 667
291 Bangladesh 12977 A 668 667
292 Bangladesh 12978 A 668 667
293 Bangladesh 12979 T 668 667
294 Bangladesh 12980 A 668 666
295 Bangladesh 12981 G 668 666
296 Bangladesh 12982 A 668 667
297 Bangladesh 12983 G 668 666
298 Bangladesh 12984 G 668 667
299 Bangladesh 12985 T 668 667
300 Bangladesh 12986 A 668 668
301 Bangladesh 12987 T 668 668
302 Bangladesh 12988 G 668 667
303 Bangladesh 12989 G 668 667
304 Bangladesh 12990 T 668 667
305 Bangladesh 12991 A 668 667
306 Bangladesh 12992 C 668 668
307 Bangladesh 12993 T 668 668
308 Bangladesh 12994 T 668 668
309 Bangladesh 12995 G 668 668
310 Bangladesh 12996 G 668 668
311 Bangladesh 12997 T 668 668
312 Bangladesh 12998 A 668 668
313 Bangladesh 12999 G 668 668
314 Bangladesh 13000 T 668 668
315 Bangladesh 13001 T 668 668
316 Bangladesh 13002 T 668 668
317 Bangladesh 13003 A 668 668
318 Bangladesh 13004 G 668 668
319 Bangladesh 13005 C 668 668
320 Bangladesh 13006 T 668 668
321 Bangladesh 13007 G 668 668
322 Bangladesh 13008 C 668 668
323 Bangladesh 13009 C 668 668
324 Bangladesh 13010 A 668 668
325 Bangladesh 13011 C 668 668
326 Bangladesh 13012 A 668 668
327 Bangladesh 13013 G 667 667
328 Bangladesh 13014 T 667 667
329 Bangladesh 13015 A 667 667
330 Bangladesh 13016 C 667 667
331 Bangladesh 13017 G 667 667
332 Bangladesh 13018 T 667 667
333 Bangladesh 13019 C 667 667
334 Bangladesh 13020 T 667 667
335 Bangladesh 13021 A 667 667
336 Bangladesh 13022 C 667 667
337 Bangladesh 13023 A 667 667
338 Bangladesh 13024 A 667 667