National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                                    
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                 1                    
M   6             1                        
N   21                                      
P   18                       1              
Q   12                         1            
R   18                                      
S   15                                      
T   36             1                        
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bahrain 12686 A 150 150
1 Bahrain 12687 A 150 150
2 Bahrain 12688 T 150 150
3 Bahrain 12689 A 150 150
4 Bahrain 12690 A 150 150
5 Bahrain 12691 T 150 150
6 Bahrain 12692 G 150 150
7 Bahrain 12693 A 150 150
8 Bahrain 12694 G 150 150
9 Bahrain 12695 C 150 150
10 Bahrain 12696 T 150 150
11 Bahrain 12697 T 150 150
12 Bahrain 12698 A 150 150
13 Bahrain 12699 G 150 150
14 Bahrain 12700 T 150 150
15 Bahrain 12701 C 150 150
16 Bahrain 12702 C 150 150
17 Bahrain 12703 T 150 150
18 Bahrain 12704 G 150 150
19 Bahrain 12705 T 150 150
20 Bahrain 12706 T 150 150
21 Bahrain 12707 G 150 150
22 Bahrain 12708 C 150 150
23 Bahrain 12709 A 150 150
24 Bahrain 12710 C 150 150
25 Bahrain 12711 T 150 150
26 Bahrain 12712 A 150 150
27 Bahrain 12713 C 150 150
28 Bahrain 12714 G 150 150
29 Bahrain 12715 A 150 150
30 Bahrain 12716 C 150 150
31 Bahrain 12717 A 150 150
32 Bahrain 12718 G 150 150
33 Bahrain 12719 A 150 150
34 Bahrain 12720 T 150 150
35 Bahrain 12721 G 150 150
36 Bahrain 12722 T 150 150
37 Bahrain 12723 C 150 150
38 Bahrain 12724 T 150 150
39 Bahrain 12725 T 150 150
40 Bahrain 12726 G 150 150
41 Bahrain 12727 T 150 150
42 Bahrain 12728 G 150 150
43 Bahrain 12729 C 150 150
44 Bahrain 12730 T 150 150
45 Bahrain 12731 G 150 150
46 Bahrain 12732 C 150 150
47 Bahrain 12733 C 150 150
48 Bahrain 12734 G 150 150
49 Bahrain 12735 G 150 150
50 Bahrain 12736 T 150 150
51 Bahrain 12737 A 150 150
52 Bahrain 12738 C 150 150
53 Bahrain 12739 T 150 150
54 Bahrain 12740 A 150 150
55 Bahrain 12741 C 150 150
56 Bahrain 12742 A 150 150
57 Bahrain 12743 C 150 150
58 Bahrain 12744 A 150 150
59 Bahrain 12745 A G 150 147 Gln4160Gln
60 Bahrain 12746 A 150 150
61 Bahrain 12747 C 150 150
62 Bahrain 12748 T 150 150
63 Bahrain 12749 G 150 150
64 Bahrain 12750 C 150 150
65 Bahrain 12751 T 150 150
66 Bahrain 12752 T 150 150
67 Bahrain 12753 G 150 150
68 Bahrain 12754 C 150 150
69 Bahrain 12755 A 150 150
70 Bahrain 12756 C T 150 149 Thr4164Ile
71 Bahrain 12757 T 150 150
72 Bahrain 12758 G 150 150
73 Bahrain 12759 A 150 150
74 Bahrain 12760 T 150 150
75 Bahrain 12761 G 150 150
76 Bahrain 12762 A 150 150
77 Bahrain 12763 C 150 150
78 Bahrain 12764 A 150 150
79 Bahrain 12765 A 150 150
80 Bahrain 12766 T 150 150
81 Bahrain 12767 G 150 150
82 Bahrain 12768 C 150 150
83 Bahrain 12769 G T 150 148 Ala4168Ala
84 Bahrain 12770 T 150 150
85 Bahrain 12771 T 150 150
86 Bahrain 12772 A 150 150
87 Bahrain 12773 G 150 150
88 Bahrain 12774 C 150 150
89 Bahrain 12775 T 149 149
90 Bahrain 12776 T 149 149
91 Bahrain 12777 A 149 149
92 Bahrain 12778 C 149 149
93 Bahrain 12779 T 149 149
94 Bahrain 12780 A 149 149
95 Bahrain 12781 C 149 149
96 Bahrain 12782 A 149 149
97 Bahrain 12783 A 149 149
98 Bahrain 12784 C 149 149
99 Bahrain 12785 A 149 149
100 Bahrain 12786 C 149 148
101 Bahrain 12787 A 149 149
102 Bahrain 12788 A 149 149
103 Bahrain 12789 C 149 149
104 Bahrain 12790 A 149 149
105 Bahrain 12791 A 149 149
106 Bahrain 12792 A 149 149
107 Bahrain 12793 G 149 149
108 Bahrain 12794 G 149 149
109 Bahrain 12795 G 149 149
110 Bahrain 12796 A 149 149
111 Bahrain 12797 G 149 149
112 Bahrain 12798 G 149 149
113 Bahrain 12799 T 149 149
114 Bahrain 12800 A 149 149
115 Bahrain 12801 G 149 149
116 Bahrain 12802 G 149 149
117 Bahrain 12803 T 149 149
118 Bahrain 12804 T 149 149
119 Bahrain 12805 T 149 149
120 Bahrain 12806 G 149 149
121 Bahrain 12807 T 149 149
122 Bahrain 12808 A 149 149
123 Bahrain 12809 C 149 149
124 Bahrain 12810 T 149 149
125 Bahrain 12811 T 149 149
126 Bahrain 12812 G 149 149
127 Bahrain 12813 C 149 149
128 Bahrain 12814 A 149 149
129 Bahrain 12815 C 149 149
130 Bahrain 12816 T 149 149
131 Bahrain 12817 G 149 149
132 Bahrain 12818 T 149 149
133 Bahrain 12819 T 149 149
134 Bahrain 12820 A 149 149
135 Bahrain 12821 T 149 149
136 Bahrain 12822 C 149 149
137 Bahrain 12823 C 149 149
138 Bahrain 12824 G 149 149
139 Bahrain 12825 A 149 149
140 Bahrain 12826 T 149 149
141 Bahrain 12827 T 149 149
142 Bahrain 12828 T 149 149
143 Bahrain 12829 A 149 149
144 Bahrain 12830 C 149 149
145 Bahrain 12831 A 149 149
146 Bahrain 12832 G 149 149
147 Bahrain 12833 G 149 149
148 Bahrain 12834 A 149 149
149 Bahrain 12835 T 149 149
150 Bahrain 12836 T 149 149
151 Bahrain 12837 T 149 149
152 Bahrain 12838 G 149 149
153 Bahrain 12839 A 149 149
154 Bahrain 12840 A 149 149
155 Bahrain 12841 A 149 149
156 Bahrain 12842 T 149 149
157 Bahrain 12843 G 149 149
158 Bahrain 12844 G 149 149
159 Bahrain 12845 G 149 149
160 Bahrain 12846 C 149 149
161 Bahrain 12847 T 149 149
162 Bahrain 12848 A 149 149
163 Bahrain 12849 G 149 149
164 Bahrain 12850 A 149 149
165 Bahrain 12851 T 149 149
166 Bahrain 12852 T 149 149
167 Bahrain 12853 C 149 149
168 Bahrain 12854 C 149 149
169 Bahrain 12855 C 149 149
170 Bahrain 12856 T 149 149
171 Bahrain 12857 A 149 149
172 Bahrain 12858 A 149 149
173 Bahrain 12859 G 149 149
174 Bahrain 12860 A 149 149
175 Bahrain 12861 G 149 149
176 Bahrain 12862 T 149 149
177 Bahrain 12863 G 149 149
178 Bahrain 12864 A 149 149
179 Bahrain 12865 T 149 149
180 Bahrain 12866 G 149 149
181 Bahrain 12867 G 149 149
182 Bahrain 12868 A 149 149
183 Bahrain 12869 A 149 149
184 Bahrain 12870 C 149 149
185 Bahrain 12871 T 149 149
186 Bahrain 12872 G 149 149
187 Bahrain 12873 G 149 149
188 Bahrain 12874 T 149 149
189 Bahrain 12875 A 149 149
190 Bahrain 12876 C 149 149
191 Bahrain 12877 T 149 149
192 Bahrain 12878 A 149 149
193 Bahrain 12879 T 149 149
194 Bahrain 12880 C 149 149
195 Bahrain 12881 T 149 149
196 Bahrain 12882 A 149 149
197 Bahrain 12883 T 149 149
198 Bahrain 12884 A 149 149
199 Bahrain 12885 C 149 149
200 Bahrain 12886 A 149 149
201 Bahrain 12887 G 149 149
202 Bahrain 12888 A 149 149
203 Bahrain 12889 A 149 149
204 Bahrain 12890 C T 149 148 Leu4209Leu
205 Bahrain 12891 T 149 149
206 Bahrain 12892 G 149 149
207 Bahrain 12893 G 149 149
208 Bahrain 12894 A 149 149
209 Bahrain 12895 A 149 149
210 Bahrain 12896 C 149 149
211 Bahrain 12897 C 149 149
212 Bahrain 12898 A 149 149
213 Bahrain 12899 C 149 149
214 Bahrain 12900 C 149 149
215 Bahrain 12901 T G 149 148 Pro4212Pro
216 Bahrain 12902 T 149 149
217 Bahrain 12903 G 149 149
218 Bahrain 12904 T 149 149
219 Bahrain 12905 A 149 149
220 Bahrain 12906 G 149 149
221 Bahrain 12907 G 149 149
222 Bahrain 12908 T 149 149
223 Bahrain 12909 T 149 149
224 Bahrain 12910 T 149 149
225 Bahrain 12911 G 149 149
226 Bahrain 12912 T 149 149
227 Bahrain 12913 T 149 149
228 Bahrain 12914 A 149 149
229 Bahrain 12915 C 149 149
230 Bahrain 12916 A 149 149
231 Bahrain 12917 G 149 149
232 Bahrain 12918 A 149 149
233 Bahrain 12919 C 149 149
234 Bahrain 12920 A 149 149
235 Bahrain 12921 C 149 149
236 Bahrain 12922 A 149 149
237 Bahrain 12923 C 149 149
238 Bahrain 12924 C 149 149
239 Bahrain 12925 T 149 149
240 Bahrain 12926 A 149 149
241 Bahrain 12927 A 149 149
242 Bahrain 12928 A 149 149
243 Bahrain 12929 G 149 149
244 Bahrain 12930 G 149 149
245 Bahrain 12931 T 149 149
246 Bahrain 12932 C 149 149
247 Bahrain 12933 C 149 149
248 Bahrain 12934 T 149 149
249 Bahrain 12935 A 149 149
250 Bahrain 12936 A 149 149
251 Bahrain 12937 A 149 149
252 Bahrain 12938 G 149 149
253 Bahrain 12939 T 149 149
254 Bahrain 12940 G 149 149
255 Bahrain 12941 A 149 149
256 Bahrain 12942 A 149 149
257 Bahrain 12943 G 149 149
258 Bahrain 12944 T 149 149
259 Bahrain 12945 A 149 149
260 Bahrain 12946 T 149 149
261 Bahrain 12947 T 149 149
262 Bahrain 12948 T 149 149
263 Bahrain 12949 A 149 149
264 Bahrain 12950 T 149 149
265 Bahrain 12951 A 149 149
266 Bahrain 12952 C 149 149
267 Bahrain 12953 T 149 149
268 Bahrain 12954 T 149 149
269 Bahrain 12955 T 149 149
270 Bahrain 12956 A 149 149
271 Bahrain 12957 T 149 149
272 Bahrain 12958 T 149 149
273 Bahrain 12959 A 149 149
274 Bahrain 12960 A 149 149
275 Bahrain 12961 A 149 149
276 Bahrain 12962 G 149 149
277 Bahrain 12963 G 149 149
278 Bahrain 12964 A 149 149
279 Bahrain 12965 T 149 149
280 Bahrain 12966 T 149 149
281 Bahrain 12967 A 149 149
282 Bahrain 12968 A 149 149
283 Bahrain 12969 A 149 149
284 Bahrain 12970 C 149 149
285 Bahrain 12971 A 149 149
286 Bahrain 12972 A 149 149
287 Bahrain 12973 C 149 149
288 Bahrain 12974 C 149 149
289 Bahrain 12975 T 149 149
290 Bahrain 12976 A 149 149
291 Bahrain 12977 A 149 149
292 Bahrain 12978 A 149 149
293 Bahrain 12979 T 149 149
294 Bahrain 12980 A 149 149
295 Bahrain 12981 G 149 149
296 Bahrain 12982 A 149 149
297 Bahrain 12983 G 149 149
298 Bahrain 12984 G 149 149
299 Bahrain 12985 T 149 149
300 Bahrain 12986 A 149 149
301 Bahrain 12987 T 149 149
302 Bahrain 12988 G T 149 148 Met4241Ile
303 Bahrain 12989 G 149 149
304 Bahrain 12990 T 149 149
305 Bahrain 12991 A 149 149
306 Bahrain 12992 C 149 149
307 Bahrain 12993 T 149 149
308 Bahrain 12994 T 149 149
309 Bahrain 12995 G 149 149
310 Bahrain 12996 G 149 149
311 Bahrain 12997 T 149 149
312 Bahrain 12998 A 149 149
313 Bahrain 12999 G 149 149
314 Bahrain 13000 T 149 149
315 Bahrain 13001 T 149 149
316 Bahrain 13002 T 149 149
317 Bahrain 13003 A 149 149
318 Bahrain 13004 G 149 149
319 Bahrain 13005 C 149 149
320 Bahrain 13006 T 149 149
321 Bahrain 13007 G 149 149
322 Bahrain 13008 C 149 149
323 Bahrain 13009 C 149 149
324 Bahrain 13010 A 149 149
325 Bahrain 13011 C 149 149
326 Bahrain 13012 A 149 149
327 Bahrain 13013 G 149 149
328 Bahrain 13014 T 149 149
329 Bahrain 13015 A 149 149
330 Bahrain 13016 C 149 149
331 Bahrain 13017 G 149 149
332 Bahrain 13018 T 149 149
333 Bahrain 13019 C 149 149
334 Bahrain 13020 T 149 149
335 Bahrain 13021 A 149 149
336 Bahrain 13022 C 149 149
337 Bahrain 13023 A 149 149
338 Bahrain 13024 A 149 149