National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 2                                    
C   9                                      
D   18           1         1                
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21               1                      
L   45                 1                    
M   6             1                        
N   21                     1                
P   18                       1     1 1      
Q   12                         1            
R   18                                      
S   15                                      
T   36 1           2                        
V   18                                      
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Austria 12686 A 1342 1342
1 Austria 12687 A 1342 1342
2 Austria 12688 T 1342 1342
3 Austria 12689 A 1342 1342
4 Austria 12690 A 1342 1342
5 Austria 12691 T 1342 1342
6 Austria 12692 G 1342 1342
7 Austria 12693 A 1342 1342
8 Austria 12694 G 1342 1342
9 Austria 12695 C 1342 1341
10 Austria 12696 T 1342 1342
11 Austria 12697 T 1342 1342
12 Austria 12698 A 1342 1342
13 Austria 12699 G 1342 1342
14 Austria 12700 T 1342 1342
15 Austria 12701 C 1342 1342
16 Austria 12702 C 1342 1342
17 Austria 12703 T 1342 1342
18 Austria 12704 G 1342 1342
19 Austria 12705 T 1342 1342
20 Austria 12706 T 1342 1342
21 Austria 12707 G 1342 1342
22 Austria 12708 C 1342 1342
23 Austria 12709 A 1342 1342
24 Austria 12710 C 1342 1342
25 Austria 12711 T 1342 1342
26 Austria 12712 A 1342 1342
27 Austria 12713 C 1342 1342
28 Austria 12714 G 1342 1342
29 Austria 12715 A 1342 1342
30 Austria 12716 C 1342 1342
31 Austria 12717 A 1342 1342
32 Austria 12718 G 1342 1342
33 Austria 12719 A 1342 1342
34 Austria 12720 T 1342 1342
35 Austria 12721 G 1342 1342
36 Austria 12722 T 1342 1342
37 Austria 12723 C 1342 1342
38 Austria 12724 T 1342 1342
39 Austria 12725 T 1342 1342
40 Austria 12726 G 1342 1342
41 Austria 12727 T 1342 1342
42 Austria 12728 G 1342 1342
43 Austria 12729 C 1342 1342
44 Austria 12730 T 1342 1342
45 Austria 12731 G 1342 1342
46 Austria 12732 C 1342 1341
47 Austria 12733 C A 1343 1342 Ala4156Ala
48 Austria 12734 G 1343 1343
49 Austria 12735 G 1343 1343
50 Austria 12736 T 1343 1343
51 Austria 12737 A G 1343 1341 Thr4158Ala
52 Austria 12738 C 1343 1343
53 Austria 12739 T 1343 1343
54 Austria 12740 A 1343 1343
55 Austria 12741 C 1343 1343
56 Austria 12742 A 1343 1343
57 Austria 12743 C 1343 1343
58 Austria 12744 A 1343 1343
59 Austria 12745 A 1343 1343
60 Austria 12746 A 1343 1343
61 Austria 12747 C T 1343 1340 Thr4161Ile
62 Austria 12748 T 1343 1343
63 Austria 12749 G 1343 1343
64 Austria 12750 C 1343 1343
65 Austria 12751 T 1343 1343
66 Austria 12752 T 1343 1343
67 Austria 12753 G 1343 1343
68 Austria 12754 C 1343 1343
69 Austria 12755 A 1343 1343
70 Austria 12756 C T 1343 1342 Thr4164Ile
71 Austria 12757 T 1343 1343
72 Austria 12758 G 1343 1343
73 Austria 12759 A G 1343 1342 Asp4165Gly
74 Austria 12760 T 1343 1343
75 Austria 12761 G 1343 1343
76 Austria 12762 A 1343 1343
77 Austria 12763 C 1343 1343
78 Austria 12764 A 1343 1343
79 Austria 12765 A 1343 1343
80 Austria 12766 T 1343 1343
81 Austria 12767 G 1343 1343
82 Austria 12768 C 1343 1343
83 Austria 12769 G T 1343 1340 Ala4168Ala
84 Austria 12770 T 1343 1343
85 Austria 12771 T 1343 1343
86 Austria 12772 A 1343 1343
87 Austria 12773 G 1343 1343
88 Austria 12774 C 1343 1343
89 Austria 12775 T 1343 1343
90 Austria 12776 T 1343 1343
91 Austria 12777 A 1343 1343
92 Austria 12778 C 1343 1343
93 Austria 12779 T 1343 1343
94 Austria 12780 A 1341 1341
95 Austria 12781 C T 1341 1340 Tyr4172Tyr
96 Austria 12782 A 1341 1341
97 Austria 12783 A 1341 1341
98 Austria 12784 C T 1341 1340 Asn4173Asn
99 Austria 12785 A 1341 1341
100 Austria 12786 C 1341 1341
101 Austria 12787 A 1341 1341
102 Austria 12788 A 1341 1341
103 Austria 12789 C 1341 1341
104 Austria 12790 A 1341 1341
105 Austria 12791 A 1341 1341
106 Austria 12792 A 1341 1341
107 Austria 12793 G 1341 1341
108 Austria 12794 G 1341 1340
109 Austria 12795 G 1341 1341
110 Austria 12796 A 1341 1341
111 Austria 12797 G 1341 1341
112 Austria 12798 G 1341 1341
113 Austria 12799 T 1341 1341
114 Austria 12800 A 1341 1341
115 Austria 12801 G 1341 1341
116 Austria 12802 G 1341 1341
117 Austria 12803 T 1341 1341
118 Austria 12804 T 1341 1341
119 Austria 12805 T 1341 1341
120 Austria 12806 G 1341 1341
121 Austria 12807 T 1341 1341
122 Austria 12808 A 1341 1341
123 Austria 12809 C 1341 1341
124 Austria 12810 T 1341 1341
125 Austria 12811 T C 1341 1338 Leu4182Leu
126 Austria 12812 G 1341 1341
127 Austria 12813 C 1341 1341
128 Austria 12814 A 1341 1341
129 Austria 12815 C 1341 1340
130 Austria 12816 T 1341 1341
131 Austria 12817 G 1341 1341
132 Austria 12818 T 1341 1341
133 Austria 12819 T 1341 1341
134 Austria 12820 A 1341 1341
135 Austria 12821 T 1341 1341
136 Austria 12822 C 1341 1341
137 Austria 12823 C 1341 1341
138 Austria 12824 G A 1341 1338 Asp4187Asn
139 Austria 12825 A 1341 1341
140 Austria 12826 T 1341 1341
141 Austria 12827 T 1341 1341
142 Austria 12828 T 1341 1341
143 Austria 12829 A 1341 1341
144 Austria 12830 C 1341 1341
145 Austria 12831 A 1341 1341
146 Austria 12832 G A 1341 1254 Gln4189Gln
147 Austria 12833 G 1341 1341
148 Austria 12834 A 1341 1341
149 Austria 12835 T 1341 1341
150 Austria 12836 T 1341 1341
151 Austria 12837 T 1341 1341
152 Austria 12838 G 1341 1341
153 Austria 12839 A 1341 1341
154 Austria 12840 A 1341 1341
155 Austria 12841 A G 1341 1340 Lys4192Lys
156 Austria 12842 T 1341 1341
157 Austria 12843 G 1341 1341
158 Austria 12844 G 1341 1341
159 Austria 12845 G 1341 1341
160 Austria 12846 C 1342 1342
161 Austria 12847 T 1342 1342
162 Austria 12848 A 1342 1342
163 Austria 12849 G 1342 1342
164 Austria 12850 A 1342 1342
165 Austria 12851 T 1342 1342
166 Austria 12852 T 1342 1342
167 Austria 12853 C 1342 1342
168 Austria 12854 C 1342 1342
169 Austria 12855 C 1342 1342
170 Austria 12856 T C 1342 1341 Pro4197Pro
171 Austria 12857 A 1342 1342
172 Austria 12858 A 1342 1342
173 Austria 12859 G 1342 1342
174 Austria 12860 A 1342 1342
175 Austria 12861 G 1342 1342
176 Austria 12862 T 1342 1342
177 Austria 12863 G 1342 1342
178 Austria 12864 A 1342 1342
179 Austria 12865 T 1342 1342
180 Austria 12866 G 1342 1342
181 Austria 12867 G 1342 1342
182 Austria 12868 A 1342 1342
183 Austria 12869 A 1342 1342
184 Austria 12870 C 1342 1342
185 Austria 12871 T 1342 1342
186 Austria 12872 G 1342 1342
187 Austria 12873 G 1342 1342
188 Austria 12874 T 1342 1342
189 Austria 12875 A 1342 1342
190 Austria 12876 C 1342 1342
191 Austria 12877 T 1342 1342
192 Austria 12878 A 1342 1342
193 Austria 12879 T 1342 1342
194 Austria 12880 C 1342 1342
195 Austria 12881 T 1342 1342
196 Austria 12882 A 1342 1342
197 Austria 12883 T 1342 1342
198 Austria 12884 A 1342 1342
199 Austria 12885 C 1342 1342
200 Austria 12886 A 1342 1342
201 Austria 12887 G 1342 1342
202 Austria 12888 A 1342 1342
203 Austria 12889 A 1342 1342
204 Austria 12890 C 1342 1342
205 Austria 12891 T 1342 1342
206 Austria 12892 G 1342 1342
207 Austria 12893 G 1342 1342
208 Austria 12894 A 1342 1342
209 Austria 12895 A 1342 1342
210 Austria 12896 C T 1342 1341 Pro4211Ser
211 Austria 12897 C 1342 1342
212 Austria 12898 A 1342 1342
213 Austria 12899 C 1342 1342
214 Austria 12900 C 1342 1342
215 Austria 12901 T 1342 1342
216 Austria 12902 T 1342 1342
217 Austria 12903 G 1342 1341
218 Austria 12904 T 1342 1342
219 Austria 12905 A 1342 1342
220 Austria 12906 G 1342 1342
221 Austria 12907 G 1342 1342
222 Austria 12908 T 1342 1342
223 Austria 12909 T 1342 1342
224 Austria 12910 T 1342 1341
225 Austria 12911 G 1342 1342
226 Austria 12912 T 1342 1342
227 Austria 12913 T 1342 1342
228 Austria 12914 A 1342 1342
229 Austria 12915 C 1342 1342
230 Austria 12916 A 1342 1342
231 Austria 12917 G 1342 1342
232 Austria 12918 A 1342 1342
233 Austria 12919 C 1342 1342
234 Austria 12920 A 1342 1342
235 Austria 12921 C 1342 1342
236 Austria 12922 A 1342 1342
237 Austria 12923 C A 1342 1339 Pro4220Thr
238 Austria 12924 C 1342 1342
239 Austria 12925 T 1342 1342
240 Austria 12926 A 1342 1342
241 Austria 12927 A 1342 1342
242 Austria 12928 A 1342 1342
243 Austria 12929 G 1342 1342
244 Austria 12930 G 1342 1342
245 Austria 12931 T 1342 1342
246 Austria 12932 C 1342 1342
247 Austria 12933 C 1342 1342
248 Austria 12934 T 1342 1342
249 Austria 12935 A 1342 1342
250 Austria 12936 A 1342 1342
251 Austria 12937 A 1342 1342
252 Austria 12938 G 1342 1342
253 Austria 12939 T 1342 1342
254 Austria 12940 G 1342 1342
255 Austria 12941 A 1342 1342
256 Austria 12942 A 1342 1342
257 Austria 12943 G 1342 1342
258 Austria 12944 T 1342 1342
259 Austria 12945 A 1342 1342
260 Austria 12946 T 1342 1342
261 Austria 12947 T 1342 1342
262 Austria 12948 T 1342 1342
263 Austria 12949 A 1342 1342
264 Austria 12950 T 1342 1342
265 Austria 12951 A 1342 1342
266 Austria 12952 C 1342 1342
267 Austria 12953 T 1342 1342
268 Austria 12954 T 1342 1342
269 Austria 12955 T 1342 1342
270 Austria 12956 A 1342 1342
271 Austria 12957 T 1342 1342
272 Austria 12958 T 1342 1342
273 Austria 12959 A 1342 1342
274 Austria 12960 A 1342 1342
275 Austria 12961 A 1342 1342
276 Austria 12962 G 1341 1341
277 Austria 12963 G 1341 1341
278 Austria 12964 A 1341 1341
279 Austria 12965 T 1341 1341
280 Austria 12966 T 1341 1341
281 Austria 12967 A 1341 1341
282 Austria 12968 A 1341 1341
283 Austria 12969 A 1341 1341
284 Austria 12970 C 1341 1340
285 Austria 12971 A 1341 1341
286 Austria 12972 A 1341 1341
287 Austria 12973 C 1341 1341
288 Austria 12974 C 1341 1341
289 Austria 12975 T 1341 1341
290 Austria 12976 A 1341 1341
291 Austria 12977 A 1341 1341
292 Austria 12978 A 1341 1341
293 Austria 12979 T 1341 1341
294 Austria 12980 A 1341 1341
295 Austria 12981 G 1341 1341
296 Austria 12982 A 1341 1341
297 Austria 12983 G 1341 1341
298 Austria 12984 G 1341 1341
299 Austria 12985 T 1341 1341
300 Austria 12986 A 1341 1341
301 Austria 12987 T 1341 1341
302 Austria 12988 G T 1341 1273 Met4241Ile
303 Austria 12989 G 1341 1341
304 Austria 12990 T 1341 1341
305 Austria 12991 A 1341 1341
306 Austria 12992 C 1341 1341
307 Austria 12993 T 1341 1341
308 Austria 12994 T 1341 1341
309 Austria 12995 G 1341 1341
310 Austria 12996 G 1341 1341
311 Austria 12997 T 1341 1341
312 Austria 12998 A 1341 1341
313 Austria 12999 G 1341 1341
314 Austria 13000 T 1341 1341
315 Austria 13001 T 1341 1341
316 Austria 13002 T 1341 1341
317 Austria 13003 A 1341 1341
318 Austria 13004 G 1341 1341
319 Austria 13005 C 1341 1341
320 Austria 13006 T 1341 1341
321 Austria 13007 G 1341 1341
322 Austria 13008 C 1341 1341
323 Austria 13009 C 1341 1341
324 Austria 13010 A 1341 1341
325 Austria 13011 C 1341 1341
326 Austria 13012 A 1341 1341
327 Austria 13013 G 1341 1341
328 Austria 13014 T 1341 1341
329 Austria 13015 A 1341 1341
330 Austria 13016 C 1341 1341
331 Austria 13017 G 1341 1341
332 Austria 13018 T 1341 1341
333 Austria 13019 C 1341 1341
334 Austria 13020 T 1341 1341
335 Austria 13021 A 1341 1341
336 Austria 13022 C 1341 1341
337 Austria 13023 A 1341 1341
338 Austria 13024 A 1341 1341