National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30 5                                 1    
C   9   2                                    
D   18     2                 2                
E   9                                        
F   12                                        
G   27           1                            
H                                            
I   6               1                   1    
K   21                 1     1     1          
L   45         1         7                    
M   6               2                   1    
N   21                       2                
P   18             1     3     2     1        
Q   12                 1         1            
R   18                           1 2          
S   15                         1     2        
T   36 1             8                 3      
V   18                                   1    
W   3                                        
Y   15                                       3

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Australia 12686 A 17116 17116
1 Australia 12687 A 17117 17116
2 Australia 12688 T 17117 17115
3 Australia 12689 A 17117 17116
4 Australia 12690 A 17117 17116
5 Australia 12691 T 17117 17117
6 Australia 12692 G 17117 17113
7 Australia 12693 A 17117 17116
8 Australia 12694 G 17118 17118
9 Australia 12695 C 17118 17118
10 Australia 12696 T 17118 17117
11 Australia 12697 T 17118 17118
12 Australia 12698 A 17118 17116
13 Australia 12699 G 17118 17117
14 Australia 12700 T 17119 17118
15 Australia 12701 C 17119 17119
16 Australia 12702 C 17119 17119
17 Australia 12703 T 17121 17118
18 Australia 12704 G 17121 17118
19 Australia 12705 T 17121 17118
20 Australia 12706 T 17121 17119
21 Australia 12707 G 17121 17118
22 Australia 12708 C T 17122 17118 Ala4148Val
23 Australia 12709 A 17122 17119
24 Australia 12710 C 17122 17118
25 Australia 12711 T 17124 17122
26 Australia 12712 A 17126 17124
27 Australia 12713 C 17126 17121
28 Australia 12714 G A 17126 17121 Arg4150Gln
29 Australia 12715 A 17126 17124
30 Australia 12716 C 17126 17122
31 Australia 12717 A 17126 17121
32 Australia 12718 G A 17130 17123 Gln4151Gln
33 Australia 12719 A 17130 17127
34 Australia 12720 T 17133 17132
35 Australia 12721 G A 17142 17136 Met4152Ile
36 Australia 12722 T C 17143 17140 Ser4153Pro
37 Australia 12723 C 17145 17143
38 Australia 12724 T C 17145 17144 Ser4153Ser
39 Australia 12725 T 17146 17143
40 Australia 12726 G 17147 17146
41 Australia 12727 T 17148 17148
42 Australia 12728 G 17148 17148
43 Australia 12729 C 17150 17150
44 Australia 12730 T 17151 17148
45 Australia 12731 G 17152 17151
46 Australia 12732 C 17152 17148
47 Australia 12733 C T,A 17167 17161 Ala4156Ala-p.Ala4156Ala
48 Australia 12734 G 17167 17165
49 Australia 12735 G 17167 17165
50 Australia 12736 T 17167 17167
51 Australia 12737 A 17168 17167
52 Australia 12738 C 17169 17165
53 Australia 12739 T C 17169 17168 Thr4158Thr
54 Australia 12740 A 17169 17169
55 Australia 12741 C T 17169 17166 Thr4159Ile
56 Australia 12742 A 17169 17169
57 Australia 12743 C 17169 17164
58 Australia 12744 A 17169 17166
59 Australia 12745 A 17170 17170
60 Australia 12746 A 17171 17171
61 Australia 12747 C T 17173 17167 Thr4161Ile
62 Australia 12748 T 17173 17172
63 Australia 12749 G 17173 17169
64 Australia 12750 C 17172 17168
65 Australia 12751 T 17172 17168
66 Australia 12752 T 17172 17170
67 Australia 12753 G 17172 17168
68 Australia 12754 C T 17173 17169 Cys4163Cys
69 Australia 12755 A 17173 17170
70 Australia 12756 C 17173 17169
71 Australia 12757 T 17173 17169
72 Australia 12758 G A 17173 17163 Asp4165Asn
73 Australia 12759 A 17173 17169
74 Australia 12760 T 17173 17169
75 Australia 12761 G 17173 17168
76 Australia 12762 A 17172 17169
77 Australia 12763 C T 17172 17037 Asp4166Asp
78 Australia 12764 A 17172 17169
79 Australia 12765 A 17172 17169
80 Australia 12766 T 17172 17169
81 Australia 12767 G 17171 17168
82 Australia 12768 C 17171 17167
83 Australia 12769 G 17171 17163
84 Australia 12770 T 17171 17168
85 Australia 12771 T 17171 17169
86 Australia 12772 A 17172 17169
87 Australia 12773 G 17172 17168
88 Australia 12774 C 17172 17168
89 Australia 12775 T 17172 17170
90 Australia 12776 T 17172 17170
91 Australia 12777 A 17172 17170
92 Australia 12778 C T 17172 17160 Tyr4171Tyr
93 Australia 12779 T 17172 17170
94 Australia 12780 A 17156 17152
95 Australia 12781 C T 17154 17127 Tyr4172Tyr
96 Australia 12782 A 17153 17148
97 Australia 12783 A 17153 17150
98 Australia 12784 C T 17153 17137 Asn4173Asn
99 Australia 12785 A 17148 17144
100 Australia 12786 C T 17148 17141 Thr4174Ile
101 Australia 12787 A 17146 17142
102 Australia 12788 A 17146 17143
103 Australia 12789 C T 17146 17134 Thr4175Ile
104 Australia 12790 A T 17146 17132 Thr4175Thr
105 Australia 12791 A 17146 17140
106 Australia 12792 A G 17142 17138 Lys4176Arg
107 Australia 12793 G T,A 17142 17127 Lys4176Asn-p.Lys4176Lys
108 Australia 12794 G 17141 17136
109 Australia 12795 G 17131 17008
110 Australia 12796 A 17124 17118
111 Australia 12797 G 17120 17108
112 Australia 12798 G 17120 17111
113 Australia 12799 T 17120 17113
114 Australia 12800 A 17121 17115
115 Australia 12801 G 17121 17111
116 Australia 12802 G 17121 17109
117 Australia 12803 T 17121 17114
118 Australia 12804 T 17121 17117
119 Australia 12805 T 17121 17115
120 Australia 12806 G 17121 17115
121 Australia 12807 T 17122 17118
122 Australia 12808 A 17122 17120
123 Australia 12809 C T 17122 17111 Leu4182Phe
124 Australia 12810 T 17122 17118
125 Australia 12811 T C 17122 17118 Leu4182Leu
126 Australia 12812 G 17122 17118
127 Australia 12813 C 17122 17115
128 Australia 12814 A G 17122 17117 Ala4183Ala
129 Australia 12815 C T 17121 17116 Leu4184Leu
130 Australia 12816 T 17121 17117
131 Australia 12817 G T 17121 17114 Leu4184Leu
132 Australia 12818 T 17121 17119
133 Australia 12819 T 17121 17119
134 Australia 12820 A G 17121 17117 Leu4185Leu
135 Australia 12821 T 17121 17117
136 Australia 12822 C 17121 17120
137 Australia 12823 C T 17121 17112 Ser4186Ser
138 Australia 12824 G A 17121 17115 Asp4187Asn
139 Australia 12825 A 17120 17118
140 Australia 12826 T 17120 17117
141 Australia 12827 T 17120 17117
142 Australia 12828 T 17120 17117
143 Australia 12829 A 17120 17118
144 Australia 12830 C A 17119 17115 Gln4189Lys
145 Australia 12831 A 17119 17117
146 Australia 12832 G 17119 17117
147 Australia 12833 G 17119 17070
148 Australia 12834 A 17119 17116
149 Australia 12835 T 17119 17118
150 Australia 12836 T 17118 17117
151 Australia 12837 T 17116 17114
152 Australia 12838 G 17116 17107
153 Australia 12839 A 17116 17114
154 Australia 12840 A 17116 17114
155 Australia 12841 A 17116 17114
156 Australia 12842 T 17116 17113
157 Australia 12843 G 17116 17111
158 Australia 12844 G 17115 17112
159 Australia 12845 G 17115 17109
160 Australia 12846 C 17115 17109
161 Australia 12847 T 17115 17113
162 Australia 12848 A 17114 17113
163 Australia 12849 G 17114 17112
164 Australia 12850 A G 17113 16944 Arg4195Arg
165 Australia 12851 T 17113 17111
166 Australia 12852 T 17113 17109
167 Australia 12853 C 17113 17111
168 Australia 12854 C T 17113 17111 Pro4197Ser
169 Australia 12855 C A 17113 17112 Pro4197His
170 Australia 12856 T 17113 17113
171 Australia 12857 A 17113 17113
172 Australia 12858 A 17113 17112
173 Australia 12859 G 17113 17111
174 Australia 12860 A 17112 17110
175 Australia 12861 G 17112 17107
176 Australia 12862 T 17112 17110
177 Australia 12863 G 17110 17108
178 Australia 12864 A 17110 17107
179 Australia 12865 T 17110 17109
180 Australia 12866 G 17110 17109
181 Australia 12867 G 17110 17108
182 Australia 12868 A 17107 17106
183 Australia 12869 A 17107 17107
184 Australia 12870 C 17107 17103
185 Australia 12871 T 17107 17105
186 Australia 12872 G 17106 17101
187 Australia 12873 G 17105 17101
188 Australia 12874 T 17106 17102
189 Australia 12875 A G 17106 17102 Thr4204Ala
190 Australia 12876 C 17105 17101
191 Australia 12877 T 17105 17102
192 Australia 12878 A G 17105 17090 Ile4205Val
193 Australia 12879 T 17105 17102
194 Australia 12880 C T 17104 17082 Ile4205Ile
195 Australia 12881 T 17104 17099
196 Australia 12882 A 17104 17100
197 Australia 12883 T C 17104 17093 Tyr4206Tyr
198 Australia 12884 A 17103 17101
199 Australia 12885 C T 17103 17087 Thr4207Ile
200 Australia 12886 A G 17101 17093 Thr4207Thr
201 Australia 12887 G 17101 17093
202 Australia 12888 A 17101 17098
203 Australia 12889 A 17100 17097
204 Australia 12890 C 17099 17094
205 Australia 12891 T 17099 17096
206 Australia 12892 G 17099 17093
207 Australia 12893 G 17099 17092
208 Australia 12894 A 17096 17092
209 Australia 12895 A 17095 17091
210 Australia 12896 C 17095 17091
211 Australia 12897 C T 17095 17088 Pro4211Leu
212 Australia 12898 A G 17094 17087 Pro4211Pro
213 Australia 12899 C 17094 17088
214 Australia 12900 C 17094 17089
215 Australia 12901 T 17093 17088
216 Australia 12902 T 17093 17084
217 Australia 12903 G 17092 17084
218 Australia 12904 T C 17092 17086 Cys4213Cys
219 Australia 12905 A 17092 17087
220 Australia 12906 G 17090 17084
221 Australia 12907 G A 17090 17083 Arg4214Arg
222 Australia 12908 T 17089 17078
223 Australia 12909 T 17089 17083
224 Australia 12910 T 17089 17083
225 Australia 12911 G 17089 17082
226 Australia 12912 T 17088 17081
227 Australia 12913 T 17088 17082
228 Australia 12914 A 17088 17083
229 Australia 12915 C T 17088 17077 Thr4217Ile
230 Australia 12916 A 17088 17080
231 Australia 12917 G 17088 17080
232 Australia 12918 A 17088 17079
233 Australia 12919 C T 17087 17077 Asp4218Asp
234 Australia 12920 A 17086 17081
235 Australia 12921 C T 17086 17081 Thr4219Ile
236 Australia 12922 A 17086 17082
237 Australia 12923 C 17086 17080
238 Australia 12924 C T 17086 17074 Pro4220Leu
239 Australia 12925 T 17086 17078
240 Australia 12926 A 17085 17077
241 Australia 12927 A 17085 17077
242 Australia 12928 A 17085 17079
243 Australia 12929 G 17085 17076
244 Australia 12930 G 17085 17073
245 Australia 12931 T 17084 17072
246 Australia 12932 C 17083 17069
247 Australia 12933 C T 17083 17065 Pro4223Leu
248 Australia 12934 T C 17083 17071 Pro4223Pro
249 Australia 12935 A 17083 17067
250 Australia 12936 A 17083 17072
251 Australia 12937 A 17083 17072
252 Australia 12938 G 17083 17068
253 Australia 12939 T 17077 17058
254 Australia 12940 G 17076 17056
255 Australia 12941 A 17076 17057
256 Australia 12942 A 17076 17055
257 Australia 12943 G 17076 17059
258 Australia 12944 T 17076 17062
259 Australia 12945 A 17076 17062
260 Australia 12946 T 17076 17059
261 Australia 12947 T 17076 17062
262 Australia 12948 T 17076 17060
263 Australia 12949 A G 17076 17058 Leu4228Leu
264 Australia 12950 T 17076 17063
265 Australia 12951 A 17074 17058
266 Australia 12952 C 17073 17057
267 Australia 12953 T 17070 17053
268 Australia 12954 T 17070 17054
269 Australia 12955 T 17069 17053
270 Australia 12956 A 17069 17053
271 Australia 12957 T 17074 17068
272 Australia 12958 T 17075 17070
273 Australia 12959 A 17075 17071
274 Australia 12960 A 17075 17072
275 Australia 12961 A 17075 17071
276 Australia 12962 G 17075 17071
277 Australia 12963 G 17075 17072
278 Australia 12964 A G 17075 17070 Gly4233Gly
279 Australia 12965 T 17075 17070
280 Australia 12966 T 17075 17072
281 Australia 12967 A 17075 17070
282 Australia 12968 A 17073 17068
283 Australia 12969 A 17073 17068
284 Australia 12970 C T 17073 17061 Asn4235Asn
285 Australia 12971 A 17071 17063
286 Australia 12972 A 17071 17065
287 Australia 12973 C 17071 17061
288 Australia 12974 C T 17071 17064 Leu4237Leu
289 Australia 12975 T 17071 17067
290 Australia 12976 A 17072 17068
291 Australia 12977 A 17072 17070
292 Australia 12978 A 17072 17070
293 Australia 12979 T 17072 17069
294 Australia 12980 A 17072 17066
295 Australia 12981 G 17072 17065
296 Australia 12982 A 17070 17067
297 Australia 12983 G 17070 17066
298 Australia 12984 G 17069 17066
299 Australia 12985 T 17068 17065
300 Australia 12986 A G 17068 17062 Met4241Val
301 Australia 12987 T 17067 17063
302 Australia 12988 G T 17067 17044 Met4241Ile
303 Australia 12989 G 17067 17061
304 Australia 12990 T 17067 17065
305 Australia 12991 A C 17067 17064 Val4242Val
306 Australia 12992 C 17067 17064
307 Australia 12993 T 17066 17063
308 Australia 12994 T 17066 17064
309 Australia 12995 G 17066 17062
310 Australia 12996 G 17066 17064
311 Australia 12997 T 17065 17064
312 Australia 12998 A 17064 17063
313 Australia 12999 G 17064 17062
314 Australia 13000 T 17064 17062
315 Australia 13001 T 17064 17063
316 Australia 13002 T 17064 17062
317 Australia 13003 A 17064 17062
318 Australia 13004 G 17062 17058
319 Australia 13005 C 17062 17059
320 Australia 13006 T C 17062 17051 Ala4247Ala
321 Australia 13007 G 17062 17060
322 Australia 13008 C 17062 17057
323 Australia 13009 C T 17060 17055 Ala4248Ala
324 Australia 13010 A 17060 17057
325 Australia 13011 C T 17060 17034 Thr4249Ile
326 Australia 13012 A 17060 17056
327 Australia 13013 G 17060 17059
328 Australia 13014 T 17060 17058
329 Australia 13015 A 17060 17058
330 Australia 13016 C 17060 17058
331 Australia 13017 G 17060 17057
332 Australia 13018 T 17059 17058
333 Australia 13019 C T 17059 17024 Leu4252Leu
334 Australia 13020 T 17059 17058
335 Australia 13021 A 17059 17057
336 Australia 13022 C 17059 17056
337 Australia 13023 A 17059 17059
338 Australia 13024 A 17059 17059