National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Aruba 12686 A 11 11
1 Aruba 12687 A 11 11
2 Aruba 12688 T 11 11
3 Aruba 12689 A 11 11
4 Aruba 12690 A 11 11
5 Aruba 12691 T 11 11
6 Aruba 12692 G 11 11
7 Aruba 12693 A 11 11
8 Aruba 12694 G 11 11
9 Aruba 12695 C 11 11
10 Aruba 12696 T 11 11
11 Aruba 12697 T 11 11
12 Aruba 12698 A 11 11
13 Aruba 12699 G 11 11
14 Aruba 12700 T 11 11
15 Aruba 12701 C 11 11
16 Aruba 12702 C 11 11
17 Aruba 12703 T 11 11
18 Aruba 12704 G 11 11
19 Aruba 12705 T 11 11
20 Aruba 12706 T 11 11
21 Aruba 12707 G 11 11
22 Aruba 12708 C 11 11
23 Aruba 12709 A 11 11
24 Aruba 12710 C 11 11
25 Aruba 12711 T 11 11
26 Aruba 12712 A 11 11
27 Aruba 12713 C 11 11
28 Aruba 12714 G 11 11
29 Aruba 12715 A 11 11
30 Aruba 12716 C 11 11
31 Aruba 12717 A 11 11
32 Aruba 12718 G 11 11
33 Aruba 12719 A 11 11
34 Aruba 12720 T 11 11
35 Aruba 12721 G 11 11
36 Aruba 12722 T 11 11
37 Aruba 12723 C 11 11
38 Aruba 12724 T 11 11
39 Aruba 12725 T 11 11
40 Aruba 12726 G 11 11
41 Aruba 12727 T 11 11
42 Aruba 12728 G 11 11
43 Aruba 12729 C 11 11
44 Aruba 12730 T 11 11
45 Aruba 12731 G 11 11
46 Aruba 12732 C 11 11
47 Aruba 12733 C 11 11
48 Aruba 12734 G 11 11
49 Aruba 12735 G 11 11
50 Aruba 12736 T 11 11
51 Aruba 12737 A 11 11
52 Aruba 12738 C 11 11
53 Aruba 12739 T 11 11
54 Aruba 12740 A 11 11
55 Aruba 12741 C 11 11
56 Aruba 12742 A 11 11
57 Aruba 12743 C 11 11
58 Aruba 12744 A 11 11
59 Aruba 12745 A 11 11
60 Aruba 12746 A 11 11
61 Aruba 12747 C 11 11
62 Aruba 12748 T 11 11
63 Aruba 12749 G 11 11
64 Aruba 12750 C 11 11
65 Aruba 12751 T 11 11
66 Aruba 12752 T 11 11
67 Aruba 12753 G 11 11
68 Aruba 12754 C 11 11
69 Aruba 12755 A 11 11
70 Aruba 12756 C 11 11
71 Aruba 12757 T 11 11
72 Aruba 12758 G 11 11
73 Aruba 12759 A 11 11
74 Aruba 12760 T 11 11
75 Aruba 12761 G 11 11
76 Aruba 12762 A 11 11
77 Aruba 12763 C 11 11
78 Aruba 12764 A 11 11
79 Aruba 12765 A 11 11
80 Aruba 12766 T 11 11
81 Aruba 12767 G 11 11
82 Aruba 12768 C 11 11
83 Aruba 12769 G 11 11
84 Aruba 12770 T 11 11
85 Aruba 12771 T 11 11
86 Aruba 12772 A 11 11
87 Aruba 12773 G 11 11
88 Aruba 12774 C 11 11
89 Aruba 12775 T 11 11
90 Aruba 12776 T 11 11
91 Aruba 12777 A 11 11
92 Aruba 12778 C 11 11
93 Aruba 12779 T 11 11
94 Aruba 12780 A 11 11
95 Aruba 12781 C 11 11
96 Aruba 12782 A 11 11
97 Aruba 12783 A 11 11
98 Aruba 12784 C 11 11
99 Aruba 12785 A 11 11
100 Aruba 12786 C 11 11
101 Aruba 12787 A 11 11
102 Aruba 12788 A 11 11
103 Aruba 12789 C 11 11
104 Aruba 12790 A 11 11
105 Aruba 12791 A 11 11
106 Aruba 12792 A 11 11
107 Aruba 12793 G 11 11
108 Aruba 12794 G 11 11
109 Aruba 12795 G 11 11
110 Aruba 12796 A 11 11
111 Aruba 12797 G 11 11
112 Aruba 12798 G 11 11
113 Aruba 12799 T 11 11
114 Aruba 12800 A 11 11
115 Aruba 12801 G 11 11
116 Aruba 12802 G 11 11
117 Aruba 12803 T 11 11
118 Aruba 12804 T 11 11
119 Aruba 12805 T 11 11
120 Aruba 12806 G 11 11
121 Aruba 12807 T 11 11
122 Aruba 12808 A 11 11
123 Aruba 12809 C 11 11
124 Aruba 12810 T 11 11
125 Aruba 12811 T 11 11
126 Aruba 12812 G 11 11
127 Aruba 12813 C 11 11
128 Aruba 12814 A 11 11
129 Aruba 12815 C 11 11
130 Aruba 12816 T 11 11
131 Aruba 12817 G 11 11
132 Aruba 12818 T 11 11
133 Aruba 12819 T 11 11
134 Aruba 12820 A 11 11
135 Aruba 12821 T 11 11
136 Aruba 12822 C 11 11
137 Aruba 12823 C 11 11
138 Aruba 12824 G 11 11
139 Aruba 12825 A 11 11
140 Aruba 12826 T 11 11
141 Aruba 12827 T 11 11
142 Aruba 12828 T 11 11
143 Aruba 12829 A 11 11
144 Aruba 12830 C 11 11
145 Aruba 12831 A 11 11
146 Aruba 12832 G 11 11
147 Aruba 12833 G 11 11
148 Aruba 12834 A 11 11
149 Aruba 12835 T 11 11
150 Aruba 12836 T 11 11
151 Aruba 12837 T 11 11
152 Aruba 12838 G 11 11
153 Aruba 12839 A 11 11
154 Aruba 12840 A 11 11
155 Aruba 12841 A 11 11
156 Aruba 12842 T 11 11
157 Aruba 12843 G 11 11
158 Aruba 12844 G 11 11
159 Aruba 12845 G 11 11
160 Aruba 12846 C 11 11
161 Aruba 12847 T 11 11
162 Aruba 12848 A 11 11
163 Aruba 12849 G 11 11
164 Aruba 12850 A 11 11
165 Aruba 12851 T 11 11
166 Aruba 12852 T 11 11
167 Aruba 12853 C 11 11
168 Aruba 12854 C 11 11
169 Aruba 12855 C 11 11
170 Aruba 12856 T 11 11
171 Aruba 12857 A 11 11
172 Aruba 12858 A 11 11
173 Aruba 12859 G 11 11
174 Aruba 12860 A 11 11
175 Aruba 12861 G 11 11
176 Aruba 12862 T 11 11
177 Aruba 12863 G 11 11
178 Aruba 12864 A 11 11
179 Aruba 12865 T 11 11
180 Aruba 12866 G 11 11
181 Aruba 12867 G 11 11
182 Aruba 12868 A 11 11
183 Aruba 12869 A 11 11
184 Aruba 12870 C 11 11
185 Aruba 12871 T 11 11
186 Aruba 12872 G 11 11
187 Aruba 12873 G 11 11
188 Aruba 12874 T 11 11
189 Aruba 12875 A 11 11
190 Aruba 12876 C 11 11
191 Aruba 12877 T 11 11
192 Aruba 12878 A 11 11
193 Aruba 12879 T 11 11
194 Aruba 12880 C 11 11
195 Aruba 12881 T 11 11
196 Aruba 12882 A 11 11
197 Aruba 12883 T 11 11
198 Aruba 12884 A 11 11
199 Aruba 12885 C 11 11
200 Aruba 12886 A 11 11
201 Aruba 12887 G 11 11
202 Aruba 12888 A 11 11
203 Aruba 12889 A 11 11
204 Aruba 12890 C 11 11
205 Aruba 12891 T 11 11
206 Aruba 12892 G 11 11
207 Aruba 12893 G 11 11
208 Aruba 12894 A 11 11
209 Aruba 12895 A 11 11
210 Aruba 12896 C 11 11
211 Aruba 12897 C 11 11
212 Aruba 12898 A 11 11
213 Aruba 12899 C 11 11
214 Aruba 12900 C 11 11
215 Aruba 12901 T 11 11
216 Aruba 12902 T 11 11
217 Aruba 12903 G 11 11
218 Aruba 12904 T 11 11
219 Aruba 12905 A 11 11
220 Aruba 12906 G 11 11
221 Aruba 12907 G 11 11
222 Aruba 12908 T 11 11
223 Aruba 12909 T 11 11
224 Aruba 12910 T 11 11
225 Aruba 12911 G 11 11
226 Aruba 12912 T 11 11
227 Aruba 12913 T 11 11
228 Aruba 12914 A 11 11
229 Aruba 12915 C 11 11
230 Aruba 12916 A 11 11
231 Aruba 12917 G 11 11
232 Aruba 12918 A 11 11
233 Aruba 12919 C 11 11
234 Aruba 12920 A 11 11
235 Aruba 12921 C 11 11
236 Aruba 12922 A 11 11
237 Aruba 12923 C 11 11
238 Aruba 12924 C 11 11
239 Aruba 12925 T 11 11
240 Aruba 12926 A 11 11
241 Aruba 12927 A 11 11
242 Aruba 12928 A 11 11
243 Aruba 12929 G 11 11
244 Aruba 12930 G 11 11
245 Aruba 12931 T 11 11
246 Aruba 12932 C 11 11
247 Aruba 12933 C 11 11
248 Aruba 12934 T 11 11
249 Aruba 12935 A 11 11
250 Aruba 12936 A 11 11
251 Aruba 12937 A 11 11
252 Aruba 12938 G 11 11
253 Aruba 12939 T 11 11
254 Aruba 12940 G 11 11
255 Aruba 12941 A 11 11
256 Aruba 12942 A 11 11
257 Aruba 12943 G 11 11
258 Aruba 12944 T 11 11
259 Aruba 12945 A 11 11
260 Aruba 12946 T 11 11
261 Aruba 12947 T 11 11
262 Aruba 12948 T 11 11
263 Aruba 12949 A 11 11
264 Aruba 12950 T 11 11
265 Aruba 12951 A 11 11
266 Aruba 12952 C 11 11
267 Aruba 12953 T 11 11
268 Aruba 12954 T 11 11
269 Aruba 12955 T 11 11
270 Aruba 12956 A 11 11
271 Aruba 12957 T 11 11
272 Aruba 12958 T 11 11
273 Aruba 12959 A 11 11
274 Aruba 12960 A 11 11
275 Aruba 12961 A 11 11
276 Aruba 12962 G 11 11
277 Aruba 12963 G 11 11
278 Aruba 12964 A 11 11
279 Aruba 12965 T 11 11
280 Aruba 12966 T 11 11
281 Aruba 12967 A 11 11
282 Aruba 12968 A 11 11
283 Aruba 12969 A 11 11
284 Aruba 12970 C 11 11
285 Aruba 12971 A 11 11
286 Aruba 12972 A 11 11
287 Aruba 12973 C 11 11
288 Aruba 12974 C 11 11
289 Aruba 12975 T 11 11
290 Aruba 12976 A 11 11
291 Aruba 12977 A 11 11
292 Aruba 12978 A 11 11
293 Aruba 12979 T 11 11
294 Aruba 12980 A 11 11
295 Aruba 12981 G 11 11
296 Aruba 12982 A 11 11
297 Aruba 12983 G 11 11
298 Aruba 12984 G 11 11
299 Aruba 12985 T 11 11
300 Aruba 12986 A 11 11
301 Aruba 12987 T 11 11
302 Aruba 12988 G 11 11
303 Aruba 12989 G 11 11
304 Aruba 12990 T 11 11
305 Aruba 12991 A 11 11
306 Aruba 12992 C 11 11
307 Aruba 12993 T 11 11
308 Aruba 12994 T 11 11
309 Aruba 12995 G 11 11
310 Aruba 12996 G 11 11
311 Aruba 12997 T 11 11
312 Aruba 12998 A 11 11
313 Aruba 12999 G 11 11
314 Aruba 13000 T 11 11
315 Aruba 13001 T 11 11
316 Aruba 13002 T 11 11
317 Aruba 13003 A 11 11
318 Aruba 13004 G 11 11
319 Aruba 13005 C 11 11
320 Aruba 13006 T 11 11
321 Aruba 13007 G 11 11
322 Aruba 13008 C 11 11
323 Aruba 13009 C 11 11
324 Aruba 13010 A 11 11
325 Aruba 13011 C 11 11
326 Aruba 13012 A 11 11
327 Aruba 13013 G 11 11
328 Aruba 13014 T 11 11
329 Aruba 13015 A 11 11
330 Aruba 13016 C 11 11
331 Aruba 13017 G 11 11
332 Aruba 13018 T 11 11
333 Aruba 13019 C 11 11
334 Aruba 13020 T 11 11
335 Aruba 13021 A 11 11
336 Aruba 13022 C 11 11
337 Aruba 13023 A 11 11
338 Aruba 13024 A 11 11