National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Armenia 12686 A 3 3
1 Armenia 12687 A 3 3
2 Armenia 12688 T 3 3
3 Armenia 12689 A 3 3
4 Armenia 12690 A 3 3
5 Armenia 12691 T 3 3
6 Armenia 12692 G 3 3
7 Armenia 12693 A 3 3
8 Armenia 12694 G 3 3
9 Armenia 12695 C 3 3
10 Armenia 12696 T 3 3
11 Armenia 12697 T 3 3
12 Armenia 12698 A 3 3
13 Armenia 12699 G 3 3
14 Armenia 12700 T 3 3
15 Armenia 12701 C 3 3
16 Armenia 12702 C 3 3
17 Armenia 12703 T 3 3
18 Armenia 12704 G 3 3
19 Armenia 12705 T 3 3
20 Armenia 12706 T 3 3
21 Armenia 12707 G 3 3
22 Armenia 12708 C 3 3
23 Armenia 12709 A 3 3
24 Armenia 12710 C 3 3
25 Armenia 12711 T 3 3
26 Armenia 12712 A 3 3
27 Armenia 12713 C 3 3
28 Armenia 12714 G 3 3
29 Armenia 12715 A 3 3
30 Armenia 12716 C 3 3
31 Armenia 12717 A 3 3
32 Armenia 12718 G 3 3
33 Armenia 12719 A 3 3
34 Armenia 12720 T 3 3
35 Armenia 12721 G 3 3
36 Armenia 12722 T 3 3
37 Armenia 12723 C 3 3
38 Armenia 12724 T 3 3
39 Armenia 12725 T 3 3
40 Armenia 12726 G 3 3
41 Armenia 12727 T 3 3
42 Armenia 12728 G 3 3
43 Armenia 12729 C 3 3
44 Armenia 12730 T 3 3
45 Armenia 12731 G 3 3
46 Armenia 12732 C 3 3
47 Armenia 12733 C 3 3
48 Armenia 12734 G 3 3
49 Armenia 12735 G 3 3
50 Armenia 12736 T 3 3
51 Armenia 12737 A 3 3
52 Armenia 12738 C 3 3
53 Armenia 12739 T 3 3
54 Armenia 12740 A 3 3
55 Armenia 12741 C 3 3
56 Armenia 12742 A 3 3
57 Armenia 12743 C 3 3
58 Armenia 12744 A 3 3
59 Armenia 12745 A 3 3
60 Armenia 12746 A 3 3
61 Armenia 12747 C 3 3
62 Armenia 12748 T 3 3
63 Armenia 12749 G 3 3
64 Armenia 12750 C 3 3
65 Armenia 12751 T 3 3
66 Armenia 12752 T 3 3
67 Armenia 12753 G 3 3
68 Armenia 12754 C 3 3
69 Armenia 12755 A 3 3
70 Armenia 12756 C 3 3
71 Armenia 12757 T 3 3
72 Armenia 12758 G 3 3
73 Armenia 12759 A 3 3
74 Armenia 12760 T 3 3
75 Armenia 12761 G 3 3
76 Armenia 12762 A 3 3
77 Armenia 12763 C 3 3
78 Armenia 12764 A 3 3
79 Armenia 12765 A 3 3
80 Armenia 12766 T 3 3
81 Armenia 12767 G 3 3
82 Armenia 12768 C 3 3
83 Armenia 12769 G 3 3
84 Armenia 12770 T 3 3
85 Armenia 12771 T 3 3
86 Armenia 12772 A 3 3
87 Armenia 12773 G 3 3
88 Armenia 12774 C 3 3
89 Armenia 12775 T 3 3
90 Armenia 12776 T 3 3
91 Armenia 12777 A 3 3
92 Armenia 12778 C 3 3
93 Armenia 12779 T 3 3
94 Armenia 12780 A 3 3
95 Armenia 12781 C 3 3
96 Armenia 12782 A 3 3
97 Armenia 12783 A 3 3
98 Armenia 12784 C 3 3
99 Armenia 12785 A 3 3
100 Armenia 12786 C 3 3
101 Armenia 12787 A 3 3
102 Armenia 12788 A 3 3
103 Armenia 12789 C 3 3
104 Armenia 12790 A 3 3
105 Armenia 12791 A 3 3
106 Armenia 12792 A 3 3
107 Armenia 12793 G 3 3
108 Armenia 12794 G 3 3
109 Armenia 12795 G 3 3
110 Armenia 12796 A 3 3
111 Armenia 12797 G 3 3
112 Armenia 12798 G 3 3
113 Armenia 12799 T 3 3
114 Armenia 12800 A 3 3
115 Armenia 12801 G 3 3
116 Armenia 12802 G 3 3
117 Armenia 12803 T 3 3
118 Armenia 12804 T 3 3
119 Armenia 12805 T 3 3
120 Armenia 12806 G 3 3
121 Armenia 12807 T 3 3
122 Armenia 12808 A 3 3
123 Armenia 12809 C 3 3
124 Armenia 12810 T 3 3
125 Armenia 12811 T 3 3
126 Armenia 12812 G 3 3
127 Armenia 12813 C 3 3
128 Armenia 12814 A 3 3
129 Armenia 12815 C 3 3
130 Armenia 12816 T 3 3
131 Armenia 12817 G 3 3
132 Armenia 12818 T 3 3
133 Armenia 12819 T 3 3
134 Armenia 12820 A 3 3
135 Armenia 12821 T 3 3
136 Armenia 12822 C 3 3
137 Armenia 12823 C 3 3
138 Armenia 12824 G 3 3
139 Armenia 12825 A 3 3
140 Armenia 12826 T 3 3
141 Armenia 12827 T 3 3
142 Armenia 12828 T 3 3
143 Armenia 12829 A 3 3
144 Armenia 12830 C 3 3
145 Armenia 12831 A 3 3
146 Armenia 12832 G 3 3
147 Armenia 12833 G 3 3
148 Armenia 12834 A 3 3
149 Armenia 12835 T 3 3
150 Armenia 12836 T 3 3
151 Armenia 12837 T 3 3
152 Armenia 12838 G 3 3
153 Armenia 12839 A 3 3
154 Armenia 12840 A 3 3
155 Armenia 12841 A 3 3
156 Armenia 12842 T 3 3
157 Armenia 12843 G 3 3
158 Armenia 12844 G 3 3
159 Armenia 12845 G 3 3
160 Armenia 12846 C 3 3
161 Armenia 12847 T 3 3
162 Armenia 12848 A 3 3
163 Armenia 12849 G 3 3
164 Armenia 12850 A 3 3
165 Armenia 12851 T 3 3
166 Armenia 12852 T 3 3
167 Armenia 12853 C 3 3
168 Armenia 12854 C 3 3
169 Armenia 12855 C 3 3
170 Armenia 12856 T 3 3
171 Armenia 12857 A 3 3
172 Armenia 12858 A 3 3
173 Armenia 12859 G 3 3
174 Armenia 12860 A 3 3
175 Armenia 12861 G 3 3
176 Armenia 12862 T 3 3
177 Armenia 12863 G 3 3
178 Armenia 12864 A 3 3
179 Armenia 12865 T 3 3
180 Armenia 12866 G 3 3
181 Armenia 12867 G 3 3
182 Armenia 12868 A 3 3
183 Armenia 12869 A 3 3
184 Armenia 12870 C 3 3
185 Armenia 12871 T 3 3
186 Armenia 12872 G 3 3
187 Armenia 12873 G 3 3
188 Armenia 12874 T 3 3
189 Armenia 12875 A 3 3
190 Armenia 12876 C 3 3
191 Armenia 12877 T 3 3
192 Armenia 12878 A 3 3
193 Armenia 12879 T 3 3
194 Armenia 12880 C 3 3
195 Armenia 12881 T 3 3
196 Armenia 12882 A 3 3
197 Armenia 12883 T 3 3
198 Armenia 12884 A 3 3
199 Armenia 12885 C 3 3
200 Armenia 12886 A 3 3
201 Armenia 12887 G 3 3
202 Armenia 12888 A 3 3
203 Armenia 12889 A 3 3
204 Armenia 12890 C 3 3
205 Armenia 12891 T 3 3
206 Armenia 12892 G 3 3
207 Armenia 12893 G 3 3
208 Armenia 12894 A 3 3
209 Armenia 12895 A 3 3
210 Armenia 12896 C 3 3
211 Armenia 12897 C 3 3
212 Armenia 12898 A 3 3
213 Armenia 12899 C 3 3
214 Armenia 12900 C 3 3
215 Armenia 12901 T 3 3
216 Armenia 12902 T 3 3
217 Armenia 12903 G 3 3
218 Armenia 12904 T 3 3
219 Armenia 12905 A 3 3
220 Armenia 12906 G 3 3
221 Armenia 12907 G 3 3
222 Armenia 12908 T 3 3
223 Armenia 12909 T 3 3
224 Armenia 12910 T 3 3
225 Armenia 12911 G 3 3
226 Armenia 12912 T 3 3
227 Armenia 12913 T 3 3
228 Armenia 12914 A 3 3
229 Armenia 12915 C 3 3
230 Armenia 12916 A 3 3
231 Armenia 12917 G 3 3
232 Armenia 12918 A 3 3
233 Armenia 12919 C 3 3
234 Armenia 12920 A 3 3
235 Armenia 12921 C 3 3
236 Armenia 12922 A 3 3
237 Armenia 12923 C 3 3
238 Armenia 12924 C 3 3
239 Armenia 12925 T 3 3
240 Armenia 12926 A 3 3
241 Armenia 12927 A 3 3
242 Armenia 12928 A 3 3
243 Armenia 12929 G 3 3
244 Armenia 12930 G 3 3
245 Armenia 12931 T 3 3
246 Armenia 12932 C 3 3
247 Armenia 12933 C 3 3
248 Armenia 12934 T 3 3
249 Armenia 12935 A 3 3
250 Armenia 12936 A 3 3
251 Armenia 12937 A 3 3
252 Armenia 12938 G 3 3
253 Armenia 12939 T 3 3
254 Armenia 12940 G 3 3
255 Armenia 12941 A 3 3
256 Armenia 12942 A 3 3
257 Armenia 12943 G 3 3
258 Armenia 12944 T 3 3
259 Armenia 12945 A 3 3
260 Armenia 12946 T 3 3
261 Armenia 12947 T 3 3
262 Armenia 12948 T 3 3
263 Armenia 12949 A 3 3
264 Armenia 12950 T 3 3
265 Armenia 12951 A 3 3
266 Armenia 12952 C 3 3
267 Armenia 12953 T 3 3
268 Armenia 12954 T 3 3
269 Armenia 12955 T 3 3
270 Armenia 12956 A 3 3
271 Armenia 12957 T 3 3
272 Armenia 12958 T 3 3
273 Armenia 12959 A 3 3
274 Armenia 12960 A 3 3
275 Armenia 12961 A 3 3
276 Armenia 12962 G 3 3
277 Armenia 12963 G 3 3
278 Armenia 12964 A 3 3
279 Armenia 12965 T 3 3
280 Armenia 12966 T 3 3
281 Armenia 12967 A 3 3
282 Armenia 12968 A 3 3
283 Armenia 12969 A 3 3
284 Armenia 12970 C 3 3
285 Armenia 12971 A 3 3
286 Armenia 12972 A 3 3
287 Armenia 12973 C 3 3
288 Armenia 12974 C 3 3
289 Armenia 12975 T 3 3
290 Armenia 12976 A 3 3
291 Armenia 12977 A 3 3
292 Armenia 12978 A 3 3
293 Armenia 12979 T 3 3
294 Armenia 12980 A 3 3
295 Armenia 12981 G 3 3
296 Armenia 12982 A 3 3
297 Armenia 12983 G 3 3
298 Armenia 12984 G 3 3
299 Armenia 12985 T 3 3
300 Armenia 12986 A 3 3
301 Armenia 12987 T 3 3
302 Armenia 12988 G 3 3
303 Armenia 12989 G 3 3
304 Armenia 12990 T 3 3
305 Armenia 12991 A 3 3
306 Armenia 12992 C 3 3
307 Armenia 12993 T 3 3
308 Armenia 12994 T 3 3
309 Armenia 12995 G 3 3
310 Armenia 12996 G 3 3
311 Armenia 12997 T 3 3
312 Armenia 12998 A 3 3
313 Armenia 12999 G 3 3
314 Armenia 13000 T 3 3
315 Armenia 13001 T 3 3
316 Armenia 13002 T 3 3
317 Armenia 13003 A 3 3
318 Armenia 13004 G 3 3
319 Armenia 13005 C 3 3
320 Armenia 13006 T 3 3
321 Armenia 13007 G 3 3
322 Armenia 13008 C 3 3
323 Armenia 13009 C 3 3
324 Armenia 13010 A 3 3
325 Armenia 13011 C 3 3
326 Armenia 13012 A 3 3
327 Armenia 13013 G 3 3
328 Armenia 13014 T 3 3
329 Armenia 13015 A 3 3
330 Armenia 13016 C 3 3
331 Armenia 13017 G 3 3
332 Armenia 13018 T 3 3
333 Armenia 13019 C 3 3
334 Armenia 13020 T 3 3
335 Armenia 13021 A 3 3
336 Armenia 13022 C 3 3
337 Armenia 13023 A 3 3
338 Armenia 13024 A 3 3