National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Andorra 12686 A 1 1
1 Andorra 12687 A 1 1
2 Andorra 12688 T 1 1
3 Andorra 12689 A 1 1
4 Andorra 12690 A 1 1
5 Andorra 12691 T 1 1
6 Andorra 12692 G 1 1
7 Andorra 12693 A 1 1
8 Andorra 12694 G 1 1
9 Andorra 12695 C 1 1
10 Andorra 12696 T 1 1
11 Andorra 12697 T 1 1
12 Andorra 12698 A 1 1
13 Andorra 12699 G 1 1
14 Andorra 12700 T 1 1
15 Andorra 12701 C 1 1
16 Andorra 12702 C 1 1
17 Andorra 12703 T 1 1
18 Andorra 12704 G 1 1
19 Andorra 12705 T 1 1
20 Andorra 12706 T 1 1
21 Andorra 12707 G 1 1
22 Andorra 12708 C 1 1
23 Andorra 12709 A 1 1
24 Andorra 12710 C 1 1
25 Andorra 12711 T 1 1
26 Andorra 12712 A 1 1
27 Andorra 12713 C 1 1
28 Andorra 12714 G 1 1
29 Andorra 12715 A 1 1
30 Andorra 12716 C 1 1
31 Andorra 12717 A 1 1
32 Andorra 12718 G 1 1
33 Andorra 12719 A 1 1
34 Andorra 12720 T 1 1
35 Andorra 12721 G 1 1
36 Andorra 12722 T 1 1
37 Andorra 12723 C 1 1
38 Andorra 12724 T 1 1
39 Andorra 12725 T 1 1
40 Andorra 12726 G 1 1
41 Andorra 12727 T 1 1
42 Andorra 12728 G 1 1
43 Andorra 12729 C 1 1
44 Andorra 12730 T 1 1
45 Andorra 12731 G 1 1
46 Andorra 12732 C 1 1
47 Andorra 12733 C 1 1
48 Andorra 12734 G 1 1
49 Andorra 12735 G 1 1
50 Andorra 12736 T 1 1
51 Andorra 12737 A 1 1
52 Andorra 12738 C 1 1
53 Andorra 12739 T 1 1
54 Andorra 12740 A 1 1
55 Andorra 12741 C 1 1
56 Andorra 12742 A 1 1
57 Andorra 12743 C 1 1
58 Andorra 12744 A 1 1
59 Andorra 12745 A 1 1
60 Andorra 12746 A 1 1
61 Andorra 12747 C 1 1
62 Andorra 12748 T 1 1
63 Andorra 12749 G 1 1
64 Andorra 12750 C 1 1
65 Andorra 12751 T 1 1
66 Andorra 12752 T 1 1
67 Andorra 12753 G 1 1
68 Andorra 12754 C 1 1
69 Andorra 12755 A 1 1
70 Andorra 12756 C 1 1
71 Andorra 12757 T 1 1
72 Andorra 12758 G 1 1
73 Andorra 12759 A 1 1
74 Andorra 12760 T 1 1
75 Andorra 12761 G 1 1
76 Andorra 12762 A 1 1
77 Andorra 12763 C 1 1
78 Andorra 12764 A 1 1
79 Andorra 12765 A 1 1
80 Andorra 12766 T 1 1
81 Andorra 12767 G 1 1
82 Andorra 12768 C 1 1
83 Andorra 12769 G 1 1
84 Andorra 12770 T 1 1
85 Andorra 12771 T 1 1
86 Andorra 12772 A 1 1
87 Andorra 12773 G 1 1
88 Andorra 12774 C 1 1
89 Andorra 12775 T 1 1
90 Andorra 12776 T 1 1
91 Andorra 12777 A 1 1
92 Andorra 12778 C 1 1
93 Andorra 12779 T 1 1
94 Andorra 12780 A 1 1
95 Andorra 12781 C 1 1
96 Andorra 12782 A 1 1
97 Andorra 12783 A 1 1
98 Andorra 12784 C 1 1
99 Andorra 12785 A 1 1
100 Andorra 12786 C 1 1
101 Andorra 12787 A 1 1
102 Andorra 12788 A 1 1
103 Andorra 12789 C 1 1
104 Andorra 12790 A 1 1
105 Andorra 12791 A 1 1
106 Andorra 12792 A 1 1
107 Andorra 12793 G 1 1
108 Andorra 12794 G 1 1
109 Andorra 12795 G 1 1
110 Andorra 12796 A 1 1
111 Andorra 12797 G 1 1
112 Andorra 12798 G 1 1
113 Andorra 12799 T 1 1
114 Andorra 12800 A 1 1
115 Andorra 12801 G 1 1
116 Andorra 12802 G 1 1
117 Andorra 12803 T 1 1
118 Andorra 12804 T 1 1
119 Andorra 12805 T 1 1
120 Andorra 12806 G 1 1
121 Andorra 12807 T 1 1
122 Andorra 12808 A 1 1
123 Andorra 12809 C 1 1
124 Andorra 12810 T 1 1
125 Andorra 12811 T 1 1
126 Andorra 12812 G 1 1
127 Andorra 12813 C 1 1
128 Andorra 12814 A 1 1
129 Andorra 12815 C 1 1
130 Andorra 12816 T 1 1
131 Andorra 12817 G 1 1
132 Andorra 12818 T 1 1
133 Andorra 12819 T 1 1
134 Andorra 12820 A 1 1
135 Andorra 12821 T 1 1
136 Andorra 12822 C 1 1
137 Andorra 12823 C 1 1
138 Andorra 12824 G 1 1
139 Andorra 12825 A 1 1
140 Andorra 12826 T 1 1
141 Andorra 12827 T 1 1
142 Andorra 12828 T 1 1
143 Andorra 12829 A 1 1
144 Andorra 12830 C 1 1
145 Andorra 12831 A 1 1
146 Andorra 12832 G 1 1
147 Andorra 12833 G 1 1
148 Andorra 12834 A 1 1
149 Andorra 12835 T 1 1
150 Andorra 12836 T 1 1
151 Andorra 12837 T 1 1
152 Andorra 12838 G 1 1
153 Andorra 12839 A 1 1
154 Andorra 12840 A 1 1
155 Andorra 12841 A 1 1
156 Andorra 12842 T 1 1
157 Andorra 12843 G 1 1
158 Andorra 12844 G 1 1
159 Andorra 12845 G 1 1
160 Andorra 12846 C 1 1
161 Andorra 12847 T 1 1
162 Andorra 12848 A 1 1
163 Andorra 12849 G 1 1
164 Andorra 12850 A 1 1
165 Andorra 12851 T 1 1
166 Andorra 12852 T 1 1
167 Andorra 12853 C 1 1
168 Andorra 12854 C 1 1
169 Andorra 12855 C 1 1
170 Andorra 12856 T 1 1
171 Andorra 12857 A 1 1
172 Andorra 12858 A 1 1
173 Andorra 12859 G 1 1
174 Andorra 12860 A 1 1
175 Andorra 12861 G 1 1
176 Andorra 12862 T 1 1
177 Andorra 12863 G 1 1
178 Andorra 12864 A 1 1
179 Andorra 12865 T 1 1
180 Andorra 12866 G 1 1
181 Andorra 12867 G 1 1
182 Andorra 12868 A 1 1
183 Andorra 12869 A 1 1
184 Andorra 12870 C 1 1
185 Andorra 12871 T 1 1
186 Andorra 12872 G 1 1
187 Andorra 12873 G 1 1
188 Andorra 12874 T 1 1
189 Andorra 12875 A 1 1
190 Andorra 12876 C 1 1
191 Andorra 12877 T 1 1
192 Andorra 12878 A 1 1
193 Andorra 12879 T 1 1
194 Andorra 12880 C 1 1
195 Andorra 12881 T 1 1
196 Andorra 12882 A 1 1
197 Andorra 12883 T 1 1
198 Andorra 12884 A 1 1
199 Andorra 12885 C 1 1
200 Andorra 12886 A 1 1
201 Andorra 12887 G 1 1
202 Andorra 12888 A 1 1
203 Andorra 12889 A 1 1
204 Andorra 12890 C 1 1
205 Andorra 12891 T 1 1
206 Andorra 12892 G 1 1
207 Andorra 12893 G 1 1
208 Andorra 12894 A 1 1
209 Andorra 12895 A 1 1
210 Andorra 12896 C 1 1
211 Andorra 12897 C 1 1
212 Andorra 12898 A 1 1
213 Andorra 12899 C 1 1
214 Andorra 12900 C 1 1
215 Andorra 12901 T 1 1
216 Andorra 12902 T 1 1
217 Andorra 12903 G 1 1
218 Andorra 12904 T 1 1
219 Andorra 12905 A 1 1
220 Andorra 12906 G 1 1
221 Andorra 12907 G 1 1
222 Andorra 12908 T 1 1
223 Andorra 12909 T 1 1
224 Andorra 12910 T 1 1
225 Andorra 12911 G 1 1
226 Andorra 12912 T 1 1
227 Andorra 12913 T 1 1
228 Andorra 12914 A 1 1
229 Andorra 12915 C 1 1
230 Andorra 12916 A 1 1
231 Andorra 12917 G 1 1
232 Andorra 12918 A 1 1
233 Andorra 12919 C 1 1
234 Andorra 12920 A 1 1
235 Andorra 12921 C 1 1
236 Andorra 12922 A 1 1
237 Andorra 12923 C 1 1
238 Andorra 12924 C 1 1
239 Andorra 12925 T 1 1
240 Andorra 12926 A 1 1
241 Andorra 12927 A 1 1
242 Andorra 12928 A 1 1
243 Andorra 12929 G 1 1
244 Andorra 12930 G 1 1
245 Andorra 12931 T 1 1
246 Andorra 12932 C 1 1
247 Andorra 12933 C 1 1
248 Andorra 12934 T 1 1
249 Andorra 12935 A 1 1
250 Andorra 12936 A 1 1
251 Andorra 12937 A 1 1
252 Andorra 12938 G 1 1
253 Andorra 12939 T 1 1
254 Andorra 12940 G 1 1
255 Andorra 12941 A 1 1
256 Andorra 12942 A 1 1
257 Andorra 12943 G 1 1
258 Andorra 12944 T 1 1
259 Andorra 12945 A 1 1
260 Andorra 12946 T 1 1
261 Andorra 12947 T 1 1
262 Andorra 12948 T 1 1
263 Andorra 12949 A 1 1
264 Andorra 12950 T 1 1
265 Andorra 12951 A 1 1
266 Andorra 12952 C 1 1
267 Andorra 12953 T 1 1
268 Andorra 12954 T 1 1
269 Andorra 12955 T 1 1
270 Andorra 12956 A 1 1
271 Andorra 12957 T 1 1
272 Andorra 12958 T 1 1
273 Andorra 12959 A 1 1
274 Andorra 12960 A 1 1
275 Andorra 12961 A 1 1
276 Andorra 12962 G 1 1
277 Andorra 12963 G 1 1
278 Andorra 12964 A 1 1
279 Andorra 12965 T 1 1
280 Andorra 12966 T 1 1
281 Andorra 12967 A 1 1
282 Andorra 12968 A 1 1
283 Andorra 12969 A 1 1
284 Andorra 12970 C 1 1
285 Andorra 12971 A 1 1
286 Andorra 12972 A 1 1
287 Andorra 12973 C 1 1
288 Andorra 12974 C 1 1
289 Andorra 12975 T 1 1
290 Andorra 12976 A 1 1
291 Andorra 12977 A 1 1
292 Andorra 12978 A 1 1
293 Andorra 12979 T 1 1
294 Andorra 12980 A 1 1
295 Andorra 12981 G 1 1
296 Andorra 12982 A 1 1
297 Andorra 12983 G 1 1
298 Andorra 12984 G 1 1
299 Andorra 12985 T 1 1
300 Andorra 12986 A 1 1
301 Andorra 12987 T 1 1
302 Andorra 12988 G 1 1
303 Andorra 12989 G 1 1
304 Andorra 12990 T 1 1
305 Andorra 12991 A 1 1
306 Andorra 12992 C 1 1
307 Andorra 12993 T 1 1
308 Andorra 12994 T 1 1
309 Andorra 12995 G 1 1
310 Andorra 12996 G 1 1
311 Andorra 12997 T 1 1
312 Andorra 12998 A 1 1
313 Andorra 12999 G 1 1
314 Andorra 13000 T 1 1
315 Andorra 13001 T 1 1
316 Andorra 13002 T 1 1
317 Andorra 13003 A 1 1
318 Andorra 13004 G 1 1
319 Andorra 13005 C 1 1
320 Andorra 13006 T 1 1
321 Andorra 13007 G 1 1
322 Andorra 13008 C 1 1
323 Andorra 13009 C 1 1
324 Andorra 13010 A 1 1
325 Andorra 13011 C 1 1
326 Andorra 13012 A 1 1
327 Andorra 13013 G 1 1
328 Andorra 13014 T 1 1
329 Andorra 13015 A 1 1
330 Andorra 13016 C 1 1
331 Andorra 13017 G 1 1
332 Andorra 13018 T 1 1
333 Andorra 13019 C 1 1
334 Andorra 13020 T 1 1
335 Andorra 13021 A 1 1
336 Andorra 13022 C 1 1
337 Andorra 13023 A 1 1
338 Andorra 13024 A 1 1