National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Algeria 12686 A 18 18
1 Algeria 12687 A 18 18
2 Algeria 12688 T 18 18
3 Algeria 12689 A 18 18
4 Algeria 12690 A 18 18
5 Algeria 12691 T 18 18
6 Algeria 12692 G 18 18
7 Algeria 12693 A 18 18
8 Algeria 12694 G 18 18
9 Algeria 12695 C 18 18
10 Algeria 12696 T 18 18
11 Algeria 12697 T 18 18
12 Algeria 12698 A 18 18
13 Algeria 12699 G 18 18
14 Algeria 12700 T 18 18
15 Algeria 12701 C 18 18
16 Algeria 12702 C 18 18
17 Algeria 12703 T 18 18
18 Algeria 12704 G 18 18
19 Algeria 12705 T 18 18
20 Algeria 12706 T 18 18
21 Algeria 12707 G 18 18
22 Algeria 12708 C 18 18
23 Algeria 12709 A 18 18
24 Algeria 12710 C 18 18
25 Algeria 12711 T 18 18
26 Algeria 12712 A 18 18
27 Algeria 12713 C 18 18
28 Algeria 12714 G 18 18
29 Algeria 12715 A 18 18
30 Algeria 12716 C 18 18
31 Algeria 12717 A 18 18
32 Algeria 12718 G 18 18
33 Algeria 12719 A 18 18
34 Algeria 12720 T 18 18
35 Algeria 12721 G 18 18
36 Algeria 12722 T 18 18
37 Algeria 12723 C 18 18
38 Algeria 12724 T 18 18
39 Algeria 12725 T 18 18
40 Algeria 12726 G 18 18
41 Algeria 12727 T 18 18
42 Algeria 12728 G 18 18
43 Algeria 12729 C 18 18
44 Algeria 12730 T 18 18
45 Algeria 12731 G 18 18
46 Algeria 12732 C 18 18
47 Algeria 12733 C 18 18
48 Algeria 12734 G 18 18
49 Algeria 12735 G 18 18
50 Algeria 12736 T 18 18
51 Algeria 12737 A 18 18
52 Algeria 12738 C 18 18
53 Algeria 12739 T 18 18
54 Algeria 12740 A 18 18
55 Algeria 12741 C 18 18
56 Algeria 12742 A 18 18
57 Algeria 12743 C 18 18
58 Algeria 12744 A 18 18
59 Algeria 12745 A 18 18
60 Algeria 12746 A 18 18
61 Algeria 12747 C 18 18
62 Algeria 12748 T 18 18
63 Algeria 12749 G 18 18
64 Algeria 12750 C 18 18
65 Algeria 12751 T 18 18
66 Algeria 12752 T 18 18
67 Algeria 12753 G 18 18
68 Algeria 12754 C 18 18
69 Algeria 12755 A 18 18
70 Algeria 12756 C 18 18
71 Algeria 12757 T 18 18
72 Algeria 12758 G 18 18
73 Algeria 12759 A 18 18
74 Algeria 12760 T 18 18
75 Algeria 12761 G 18 18
76 Algeria 12762 A 18 18
77 Algeria 12763 C 18 18
78 Algeria 12764 A 18 18
79 Algeria 12765 A 18 18
80 Algeria 12766 T 18 18
81 Algeria 12767 G 18 18
82 Algeria 12768 C 18 18
83 Algeria 12769 G 18 18
84 Algeria 12770 T 18 18
85 Algeria 12771 T 18 18
86 Algeria 12772 A 18 18
87 Algeria 12773 G 18 18
88 Algeria 12774 C 18 18
89 Algeria 12775 T 18 18
90 Algeria 12776 T 18 18
91 Algeria 12777 A 18 18
92 Algeria 12778 C 18 18
93 Algeria 12779 T 18 18
94 Algeria 12780 A 18 18
95 Algeria 12781 C 18 18
96 Algeria 12782 A 18 18
97 Algeria 12783 A 18 18
98 Algeria 12784 C 18 18
99 Algeria 12785 A 18 18
100 Algeria 12786 C 18 18
101 Algeria 12787 A 18 18
102 Algeria 12788 A 18 18
103 Algeria 12789 C 18 18
104 Algeria 12790 A 18 18
105 Algeria 12791 A 18 18
106 Algeria 12792 A 18 18
107 Algeria 12793 G 18 18
108 Algeria 12794 G 18 18
109 Algeria 12795 G 18 18
110 Algeria 12796 A 18 18
111 Algeria 12797 G 18 18
112 Algeria 12798 G 18 18
113 Algeria 12799 T 18 18
114 Algeria 12800 A 18 18
115 Algeria 12801 G 18 18
116 Algeria 12802 G 18 18
117 Algeria 12803 T 18 18
118 Algeria 12804 T 18 18
119 Algeria 12805 T 18 18
120 Algeria 12806 G 18 18
121 Algeria 12807 T 18 18
122 Algeria 12808 A 18 18
123 Algeria 12809 C 18 18
124 Algeria 12810 T 18 18
125 Algeria 12811 T 18 18
126 Algeria 12812 G 18 18
127 Algeria 12813 C 18 18
128 Algeria 12814 A 18 18
129 Algeria 12815 C 18 18
130 Algeria 12816 T 18 18
131 Algeria 12817 G 18 18
132 Algeria 12818 T 18 18
133 Algeria 12819 T 18 18
134 Algeria 12820 A 18 18
135 Algeria 12821 T 18 18
136 Algeria 12822 C 18 18
137 Algeria 12823 C 18 18
138 Algeria 12824 G 18 18
139 Algeria 12825 A 18 18
140 Algeria 12826 T 18 18
141 Algeria 12827 T 18 18
142 Algeria 12828 T 18 18
143 Algeria 12829 A 18 18
144 Algeria 12830 C 18 18
145 Algeria 12831 A 18 18
146 Algeria 12832 G 18 18
147 Algeria 12833 G 18 18
148 Algeria 12834 A 18 18
149 Algeria 12835 T 18 18
150 Algeria 12836 T 18 18
151 Algeria 12837 T 18 18
152 Algeria 12838 G 18 18
153 Algeria 12839 A 18 18
154 Algeria 12840 A 18 18
155 Algeria 12841 A 18 18
156 Algeria 12842 T 18 18
157 Algeria 12843 G 18 18
158 Algeria 12844 G 18 18
159 Algeria 12845 G 18 18
160 Algeria 12846 C 18 18
161 Algeria 12847 T 18 18
162 Algeria 12848 A 18 18
163 Algeria 12849 G 18 18
164 Algeria 12850 A 18 18
165 Algeria 12851 T 18 18
166 Algeria 12852 T 18 18
167 Algeria 12853 C 18 18
168 Algeria 12854 C 18 18
169 Algeria 12855 C 18 18
170 Algeria 12856 T 18 18
171 Algeria 12857 A 18 18
172 Algeria 12858 A 18 18
173 Algeria 12859 G 18 18
174 Algeria 12860 A 18 18
175 Algeria 12861 G 18 18
176 Algeria 12862 T 18 18
177 Algeria 12863 G 18 18
178 Algeria 12864 A 18 18
179 Algeria 12865 T 18 18
180 Algeria 12866 G 18 18
181 Algeria 12867 G 18 18
182 Algeria 12868 A 18 18
183 Algeria 12869 A 18 18
184 Algeria 12870 C 18 18
185 Algeria 12871 T 18 18
186 Algeria 12872 G 18 18
187 Algeria 12873 G 18 18
188 Algeria 12874 T 18 18
189 Algeria 12875 A 18 18
190 Algeria 12876 C 18 18
191 Algeria 12877 T 18 18
192 Algeria 12878 A 18 18
193 Algeria 12879 T 18 18
194 Algeria 12880 C 18 18
195 Algeria 12881 T 18 18
196 Algeria 12882 A 18 18
197 Algeria 12883 T 18 18
198 Algeria 12884 A 18 18
199 Algeria 12885 C 18 18
200 Algeria 12886 A 18 18
201 Algeria 12887 G 18 18
202 Algeria 12888 A 18 18
203 Algeria 12889 A 18 18
204 Algeria 12890 C 18 18
205 Algeria 12891 T 18 18
206 Algeria 12892 G 18 18
207 Algeria 12893 G 18 18
208 Algeria 12894 A 18 18
209 Algeria 12895 A 18 18
210 Algeria 12896 C 18 18
211 Algeria 12897 C 18 18
212 Algeria 12898 A 18 18
213 Algeria 12899 C 18 18
214 Algeria 12900 C 18 18
215 Algeria 12901 T 18 18
216 Algeria 12902 T 18 18
217 Algeria 12903 G 18 18
218 Algeria 12904 T 18 18
219 Algeria 12905 A 18 18
220 Algeria 12906 G 18 18
221 Algeria 12907 G 18 18
222 Algeria 12908 T 18 18
223 Algeria 12909 T 18 18
224 Algeria 12910 T 18 18
225 Algeria 12911 G 18 18
226 Algeria 12912 T 18 18
227 Algeria 12913 T 18 18
228 Algeria 12914 A 18 18
229 Algeria 12915 C 18 18
230 Algeria 12916 A 18 18
231 Algeria 12917 G 18 18
232 Algeria 12918 A 18 18
233 Algeria 12919 C 18 18
234 Algeria 12920 A 18 18
235 Algeria 12921 C 18 18
236 Algeria 12922 A 18 18
237 Algeria 12923 C 18 18
238 Algeria 12924 C 18 18
239 Algeria 12925 T 18 18
240 Algeria 12926 A 18 18
241 Algeria 12927 A 18 18
242 Algeria 12928 A 18 18
243 Algeria 12929 G 18 18
244 Algeria 12930 G 18 18
245 Algeria 12931 T 18 18
246 Algeria 12932 C 18 18
247 Algeria 12933 C 18 18
248 Algeria 12934 T 18 18
249 Algeria 12935 A 18 18
250 Algeria 12936 A 18 18
251 Algeria 12937 A 18 18
252 Algeria 12938 G 18 18
253 Algeria 12939 T 18 18
254 Algeria 12940 G 18 18
255 Algeria 12941 A 18 18
256 Algeria 12942 A 18 18
257 Algeria 12943 G 18 18
258 Algeria 12944 T 18 18
259 Algeria 12945 A 18 18
260 Algeria 12946 T 18 18
261 Algeria 12947 T 18 18
262 Algeria 12948 T 18 18
263 Algeria 12949 A 18 18
264 Algeria 12950 T 18 18
265 Algeria 12951 A 18 18
266 Algeria 12952 C 18 18
267 Algeria 12953 T 18 18
268 Algeria 12954 T 18 18
269 Algeria 12955 T 18 18
270 Algeria 12956 A 18 18
271 Algeria 12957 T 18 18
272 Algeria 12958 T 18 18
273 Algeria 12959 A 18 18
274 Algeria 12960 A 18 18
275 Algeria 12961 A 18 18
276 Algeria 12962 G 18 18
277 Algeria 12963 G 18 18
278 Algeria 12964 A 18 18
279 Algeria 12965 T 18 18
280 Algeria 12966 T 18 18
281 Algeria 12967 A 18 18
282 Algeria 12968 A 18 18
283 Algeria 12969 A 18 18
284 Algeria 12970 C 18 18
285 Algeria 12971 A 18 18
286 Algeria 12972 A 18 18
287 Algeria 12973 C 18 18
288 Algeria 12974 C 18 18
289 Algeria 12975 T 18 18
290 Algeria 12976 A 18 18
291 Algeria 12977 A 18 18
292 Algeria 12978 A 18 18
293 Algeria 12979 T 18 18
294 Algeria 12980 A 18 18
295 Algeria 12981 G 18 18
296 Algeria 12982 A 18 18
297 Algeria 12983 G 18 18
298 Algeria 12984 G 18 18
299 Algeria 12985 T 18 18
300 Algeria 12986 A 18 18
301 Algeria 12987 T 18 18
302 Algeria 12988 G 18 18
303 Algeria 12989 G 18 18
304 Algeria 12990 T 18 18
305 Algeria 12991 A 18 18
306 Algeria 12992 C 18 18
307 Algeria 12993 T 18 18
308 Algeria 12994 T 18 18
309 Algeria 12995 G 18 18
310 Algeria 12996 G 18 18
311 Algeria 12997 T 18 18
312 Algeria 12998 A 18 18
313 Algeria 12999 G 18 18
314 Algeria 13000 T 18 18
315 Algeria 13001 T 18 18
316 Algeria 13002 T 18 18
317 Algeria 13003 A 18 18
318 Algeria 13004 G 18 18
319 Algeria 13005 C 18 18
320 Algeria 13006 T 18 18
321 Algeria 13007 G 18 18
322 Algeria 13008 C 18 18
323 Algeria 13009 C 18 18
324 Algeria 13010 A 18 18
325 Algeria 13011 C 18 18
326 Algeria 13012 A 18 18
327 Algeria 13013 G 18 18
328 Algeria 13014 T 18 18
329 Algeria 13015 A 18 18
330 Algeria 13016 C 18 18
331 Algeria 13017 G 18 18
332 Algeria 13018 T 18 18
333 Algeria 13019 C 18 18
334 Algeria 13020 T 18 18
335 Algeria 13021 A 18 18
336 Algeria 13022 C 18 18
337 Algeria 13023 A 18 18
338 Algeria 13024 A 18 18