National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18           1                          
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Albania 12686 A 1 1
1 Albania 12687 A 1 1
2 Albania 12688 T 1 1
3 Albania 12689 A 1 1
4 Albania 12690 A 1 1
5 Albania 12691 T 1 1
6 Albania 12692 G 1 1
7 Albania 12693 A 1 1
8 Albania 12694 G 1 1
9 Albania 12695 C 1 1
10 Albania 12696 T 1 1
11 Albania 12697 T 1 1
12 Albania 12698 A 1 1
13 Albania 12699 G 1 1
14 Albania 12700 T 1 1
15 Albania 12701 C 1 1
16 Albania 12702 C 1 1
17 Albania 12703 T 1 1
18 Albania 12704 G 1 1
19 Albania 12705 T 1 1
20 Albania 12706 T 1 1
21 Albania 12707 G 1 1
22 Albania 12708 C 1 1
23 Albania 12709 A 1 1
24 Albania 12710 C 1 1
25 Albania 12711 T 1 1
26 Albania 12712 A 1 1
27 Albania 12713 C 1 1
28 Albania 12714 G 1 1
29 Albania 12715 A 1 1
30 Albania 12716 C 1 1
31 Albania 12717 A 1 1
32 Albania 12718 G 1 1
33 Albania 12719 A 1 1
34 Albania 12720 T 1 1
35 Albania 12721 G 1 1
36 Albania 12722 T 1 1
37 Albania 12723 C 1 1
38 Albania 12724 T 1 1
39 Albania 12725 T 1 1
40 Albania 12726 G 1 1
41 Albania 12727 T 1 1
42 Albania 12728 G 1 1
43 Albania 12729 C 1 1
44 Albania 12730 T 1 1
45 Albania 12731 G 1 1
46 Albania 12732 C 1 1
47 Albania 12733 C 1 1
48 Albania 12734 G 1 1
49 Albania 12735 G 1 1
50 Albania 12736 T 1 1
51 Albania 12737 A 1 1
52 Albania 12738 C 1 1
53 Albania 12739 T 1 1
54 Albania 12740 A 1 1
55 Albania 12741 C 1 1
56 Albania 12742 A 1 1
57 Albania 12743 C 1 1
58 Albania 12744 A 1 1
59 Albania 12745 A 1 1
60 Albania 12746 A 1 1
61 Albania 12747 C 1 1
62 Albania 12748 T 1 1
63 Albania 12749 G 1 1
64 Albania 12750 C 1 1
65 Albania 12751 T 1 1
66 Albania 12752 T 1 1
67 Albania 12753 G 1 1
68 Albania 12754 C 1 1
69 Albania 12755 A 1 1
70 Albania 12756 C 1 1
71 Albania 12757 T 1 1
72 Albania 12758 G 1 1
73 Albania 12759 A G 1 0 Asp4165Gly
74 Albania 12760 T 1 1
75 Albania 12761 G 1 1
76 Albania 12762 A 1 1
77 Albania 12763 C 1 1
78 Albania 12764 A 1 1
79 Albania 12765 A 1 1
80 Albania 12766 T 1 1
81 Albania 12767 G 1 1
82 Albania 12768 C 1 1
83 Albania 12769 G 1 1
84 Albania 12770 T 1 1
85 Albania 12771 T 1 1
86 Albania 12772 A 1 1
87 Albania 12773 G 1 1
88 Albania 12774 C 1 1
89 Albania 12775 T 1 1
90 Albania 12776 T 1 1
91 Albania 12777 A 1 1
92 Albania 12778 C 1 1
93 Albania 12779 T 1 1
94 Albania 12780 A 1 1
95 Albania 12781 C 1 1
96 Albania 12782 A 1 1
97 Albania 12783 A 1 1
98 Albania 12784 C 1 1
99 Albania 12785 A 1 1
100 Albania 12786 C 1 1
101 Albania 12787 A 1 1
102 Albania 12788 A 1 1
103 Albania 12789 C 1 1
104 Albania 12790 A 1 1
105 Albania 12791 A 1 1
106 Albania 12792 A 1 1
107 Albania 12793 G 1 1
108 Albania 12794 G 1 1
109 Albania 12795 G 1 1
110 Albania 12796 A 1 1
111 Albania 12797 G 1 1
112 Albania 12798 G 1 1
113 Albania 12799 T 1 1
114 Albania 12800 A 1 1
115 Albania 12801 G 1 1
116 Albania 12802 G 1 1
117 Albania 12803 T 1 1
118 Albania 12804 T 1 1
119 Albania 12805 T 1 1
120 Albania 12806 G 1 1
121 Albania 12807 T 1 1
122 Albania 12808 A 1 1
123 Albania 12809 C 1 1
124 Albania 12810 T 1 1
125 Albania 12811 T 1 1
126 Albania 12812 G 1 1
127 Albania 12813 C 1 1
128 Albania 12814 A 1 1
129 Albania 12815 C 1 1
130 Albania 12816 T 1 1
131 Albania 12817 G 1 1
132 Albania 12818 T 1 1
133 Albania 12819 T 1 1
134 Albania 12820 A 1 1
135 Albania 12821 T 1 1
136 Albania 12822 C 1 1
137 Albania 12823 C 1 1
138 Albania 12824 G 1 1
139 Albania 12825 A 1 1
140 Albania 12826 T 1 1
141 Albania 12827 T 1 1
142 Albania 12828 T 1 1
143 Albania 12829 A 1 1
144 Albania 12830 C 1 1
145 Albania 12831 A 1 1
146 Albania 12832 G 1 1
147 Albania 12833 G 1 1
148 Albania 12834 A 1 1
149 Albania 12835 T 1 1
150 Albania 12836 T 1 1
151 Albania 12837 T 1 1
152 Albania 12838 G 1 1
153 Albania 12839 A 1 1
154 Albania 12840 A 1 1
155 Albania 12841 A 1 1
156 Albania 12842 T 1 1
157 Albania 12843 G 1 1
158 Albania 12844 G 1 1
159 Albania 12845 G 1 1
160 Albania 12846 C 1 1
161 Albania 12847 T 1 1
162 Albania 12848 A 1 1
163 Albania 12849 G 1 1
164 Albania 12850 A 1 1
165 Albania 12851 T 1 1
166 Albania 12852 T 1 1
167 Albania 12853 C 1 1
168 Albania 12854 C 1 1
169 Albania 12855 C 1 1
170 Albania 12856 T 1 1
171 Albania 12857 A 1 1
172 Albania 12858 A 1 1
173 Albania 12859 G 1 1
174 Albania 12860 A 1 1
175 Albania 12861 G 1 1
176 Albania 12862 T 1 1
177 Albania 12863 G 1 1
178 Albania 12864 A 1 1
179 Albania 12865 T 1 1
180 Albania 12866 G 1 1
181 Albania 12867 G 1 1
182 Albania 12868 A 1 1
183 Albania 12869 A 1 1
184 Albania 12870 C 1 1
185 Albania 12871 T 1 1
186 Albania 12872 G 1 1
187 Albania 12873 G 1 1
188 Albania 12874 T 1 1
189 Albania 12875 A 1 1
190 Albania 12876 C 1 1
191 Albania 12877 T 1 1
192 Albania 12878 A 1 1
193 Albania 12879 T 1 1
194 Albania 12880 C 1 1
195 Albania 12881 T 1 1
196 Albania 12882 A 1 1
197 Albania 12883 T 1 1
198 Albania 12884 A 1 1
199 Albania 12885 C 1 1
200 Albania 12886 A 1 1
201 Albania 12887 G 1 1
202 Albania 12888 A 1 1
203 Albania 12889 A 1 1
204 Albania 12890 C 1 1
205 Albania 12891 T 1 1
206 Albania 12892 G 1 1
207 Albania 12893 G 1 1
208 Albania 12894 A 1 1
209 Albania 12895 A 1 1
210 Albania 12896 C 1 1
211 Albania 12897 C 1 1
212 Albania 12898 A 1 1
213 Albania 12899 C 1 1
214 Albania 12900 C 1 1
215 Albania 12901 T 1 1
216 Albania 12902 T 1 1
217 Albania 12903 G 1 1
218 Albania 12904 T 1 1
219 Albania 12905 A 1 1
220 Albania 12906 G 1 1
221 Albania 12907 G 1 1
222 Albania 12908 T 1 1
223 Albania 12909 T 1 1
224 Albania 12910 T 1 1
225 Albania 12911 G 1 1
226 Albania 12912 T 1 1
227 Albania 12913 T 1 1
228 Albania 12914 A 1 1
229 Albania 12915 C 1 1
230 Albania 12916 A 1 1
231 Albania 12917 G 1 1
232 Albania 12918 A 1 1
233 Albania 12919 C 1 1
234 Albania 12920 A 1 1
235 Albania 12921 C 1 1
236 Albania 12922 A 1 1
237 Albania 12923 C 1 1
238 Albania 12924 C 1 1
239 Albania 12925 T 1 1
240 Albania 12926 A 1 1
241 Albania 12927 A 1 1
242 Albania 12928 A 1 1
243 Albania 12929 G 1 1
244 Albania 12930 G 1 1
245 Albania 12931 T 1 1
246 Albania 12932 C 1 1
247 Albania 12933 C 1 1
248 Albania 12934 T 1 1
249 Albania 12935 A 1 1
250 Albania 12936 A 1 1
251 Albania 12937 A 1 1
252 Albania 12938 G 1 1
253 Albania 12939 T 1 1
254 Albania 12940 G 1 1
255 Albania 12941 A 1 1
256 Albania 12942 A 1 1
257 Albania 12943 G 1 1
258 Albania 12944 T 1 1
259 Albania 12945 A 1 1
260 Albania 12946 T 1 1
261 Albania 12947 T 1 1
262 Albania 12948 T 1 1
263 Albania 12949 A 1 1
264 Albania 12950 T 1 1
265 Albania 12951 A 1 1
266 Albania 12952 C 1 1
267 Albania 12953 T 1 1
268 Albania 12954 T 1 1
269 Albania 12955 T 1 1
270 Albania 12956 A 1 1
271 Albania 12957 T 1 1
272 Albania 12958 T 1 1
273 Albania 12959 A 1 1
274 Albania 12960 A 1 1
275 Albania 12961 A 1 1
276 Albania 12962 G 1 1
277 Albania 12963 G 1 1
278 Albania 12964 A 1 1
279 Albania 12965 T 1 1
280 Albania 12966 T 1 1
281 Albania 12967 A 1 1
282 Albania 12968 A 1 1
283 Albania 12969 A 1 1
284 Albania 12970 C 1 1
285 Albania 12971 A 1 1
286 Albania 12972 A 1 1
287 Albania 12973 C 1 1
288 Albania 12974 C 1 1
289 Albania 12975 T 1 1
290 Albania 12976 A 1 1
291 Albania 12977 A 1 1
292 Albania 12978 A 1 1
293 Albania 12979 T 1 1
294 Albania 12980 A 1 1
295 Albania 12981 G 1 1
296 Albania 12982 A 1 1
297 Albania 12983 G 1 1
298 Albania 12984 G 1 1
299 Albania 12985 T 1 1
300 Albania 12986 A 1 1
301 Albania 12987 T 1 1
302 Albania 12988 G 1 1
303 Albania 12989 G 1 1
304 Albania 12990 T 1 1
305 Albania 12991 A 1 1
306 Albania 12992 C 1 1
307 Albania 12993 T 1 1
308 Albania 12994 T 1 1
309 Albania 12995 G 1 1
310 Albania 12996 G 1 1
311 Albania 12997 T 1 1
312 Albania 12998 A 1 1
313 Albania 12999 G 1 1
314 Albania 13000 T 1 1
315 Albania 13001 T 1 1
316 Albania 13002 T 1 1
317 Albania 13003 A 1 1
318 Albania 13004 G 1 1
319 Albania 13005 C 1 1
320 Albania 13006 T 1 1
321 Albania 13007 G 1 1
322 Albania 13008 C 1 1
323 Albania 13009 C 1 1
324 Albania 13010 A 1 1
325 Albania 13011 C 1 1
326 Albania 13012 A 1 1
327 Albania 13013 G 1 1
328 Albania 13014 T 1 1
329 Albania 13015 A 1 1
330 Albania 13016 C 1 1
331 Albania 13017 G 1 1
332 Albania 13018 T 1 1
333 Albania 13019 C 1 1
334 Albania 13020 T 1 1
335 Albania 13021 A 1 1
336 Albania 13022 C 1 1
337 Albania 13023 A 1 1
338 Albania 13024 A 1 1