National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84                                      
C   6                                      
D   39                                      
E   27                                      
F   15                                      
G   9                                      
I   30                                      
K   45                                      
L   54                                      
M   27                                      
N   39                                      
P   18                                      
Q   33                                      
R   21                                      
S   45                                      
T   39                                      
V   39                                      
W   6                                      
Y   18                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Zambia 12092 G 2 2
1 Zambia 12093 C 2 2
2 Zambia 12094 T 2 2
3 Zambia 12095 A 2 2
4 Zambia 12096 T 2 2
5 Zambia 12097 A 2 2
6 Zambia 12098 G 2 2
7 Zambia 12099 C 2 2
8 Zambia 12100 C 2 2
9 Zambia 12101 T 2 2
10 Zambia 12102 C 2 2
11 Zambia 12103 A 2 2
12 Zambia 12104 G 2 2
13 Zambia 12105 A 2 2
14 Zambia 12106 G 2 2
15 Zambia 12107 T 2 2
16 Zambia 12108 T 2 2
17 Zambia 12109 T 2 2
18 Zambia 12110 A 2 2
19 Zambia 12111 G 2 2
20 Zambia 12112 T 2 2
21 Zambia 12113 T 2 2
22 Zambia 12114 C 2 2
23 Zambia 12115 C 2 2
24 Zambia 12116 C 2 2
25 Zambia 12117 T 2 2
26 Zambia 12118 T 2 2
27 Zambia 12119 C 2 2
28 Zambia 12120 C 2 2
29 Zambia 12121 A 2 2
30 Zambia 12122 T 2 2
31 Zambia 12123 C 2 2
32 Zambia 12124 A 2 2
33 Zambia 12125 T 2 2
34 Zambia 12126 A 2 2
35 Zambia 12127 T 2 2
36 Zambia 12128 G 2 2
37 Zambia 12129 C 2 2
38 Zambia 12130 A 2 2
39 Zambia 12131 G 2 2
40 Zambia 12132 C 2 2
41 Zambia 12133 T 2 2
42 Zambia 12134 T 2 2
43 Zambia 12135 T 2 2
44 Zambia 12136 T 2 2
45 Zambia 12137 G 2 2
46 Zambia 12138 C 2 2
47 Zambia 12139 T 2 2
48 Zambia 12140 A 2 2
49 Zambia 12141 C 2 2
50 Zambia 12142 T 2 2
51 Zambia 12143 G 2 2
52 Zambia 12144 C 2 2
53 Zambia 12145 T 2 2
54 Zambia 12146 C 2 2
55 Zambia 12147 A 2 2
56 Zambia 12148 A 2 2
57 Zambia 12149 G 2 2
58 Zambia 12150 A 2 2
59 Zambia 12151 A 2 2
60 Zambia 12152 G 2 2
61 Zambia 12153 C 2 2
62 Zambia 12154 T 2 2
63 Zambia 12155 T 2 2
64 Zambia 12156 A 2 2
65 Zambia 12157 T 2 2
66 Zambia 12158 G 2 2
67 Zambia 12159 A 2 2
68 Zambia 12160 G 2 2
69 Zambia 12161 C 2 2
70 Zambia 12162 A 2 2
71 Zambia 12163 G 2 2
72 Zambia 12164 G 2 2
73 Zambia 12165 C 2 2
74 Zambia 12166 T 2 2
75 Zambia 12167 G 2 2
76 Zambia 12168 T 2 2
77 Zambia 12169 T 2 2
78 Zambia 12170 G 2 2
79 Zambia 12171 C 2 2
80 Zambia 12172 T 2 2
81 Zambia 12173 A 2 2
82 Zambia 12174 A 2 2
83 Zambia 12175 T 2 2
84 Zambia 12176 G 2 2
85 Zambia 12177 G 2 2
86 Zambia 12178 T 2 2
87 Zambia 12179 G 2 2
88 Zambia 12180 A 2 2
89 Zambia 12181 T 2 2
90 Zambia 12182 T 2 2
91 Zambia 12183 C 2 2
92 Zambia 12184 T 2 2
93 Zambia 12185 G 2 2
94 Zambia 12186 A 2 2
95 Zambia 12187 A 2 2
96 Zambia 12188 G 2 2
97 Zambia 12189 T 2 2
98 Zambia 12190 T 2 2
99 Zambia 12191 G 2 2
100 Zambia 12192 T 2 2
101 Zambia 12193 T 2 2
102 Zambia 12194 C 2 2
103 Zambia 12195 T 2 2
104 Zambia 12196 T 2 2
105 Zambia 12197 A 2 2
106 Zambia 12198 A 2 2
107 Zambia 12199 A 2 2
108 Zambia 12200 A 2 2
109 Zambia 12201 A 2 2
110 Zambia 12202 G 2 2
111 Zambia 12203 T 2 2
112 Zambia 12204 T 2 2
113 Zambia 12205 G 2 2
114 Zambia 12206 A 2 2
115 Zambia 12207 A 2 2
116 Zambia 12208 G 2 2
117 Zambia 12209 A 2 2
118 Zambia 12210 A 2 2
119 Zambia 12211 G 2 2
120 Zambia 12212 T 2 2
121 Zambia 12213 C 2 2
122 Zambia 12214 T 2 2
123 Zambia 12215 T 2 2
124 Zambia 12216 T 2 2
125 Zambia 12217 G 2 2
126 Zambia 12218 A 2 2
127 Zambia 12219 A 2 2
128 Zambia 12220 T 2 2
129 Zambia 12221 G 2 2
130 Zambia 12222 T 2 2
131 Zambia 12223 G 2 2
132 Zambia 12224 G 2 2
133 Zambia 12225 C 2 2
134 Zambia 12226 T 2 2
135 Zambia 12227 A 2 2
136 Zambia 12228 A 2 2
137 Zambia 12229 A 2 2
138 Zambia 12230 T 2 2
139 Zambia 12231 C 2 2
140 Zambia 12232 T 2 2
141 Zambia 12233 G 2 2
142 Zambia 12234 A 2 2
143 Zambia 12235 A 2 2
144 Zambia 12236 T 2 2
145 Zambia 12237 T 2 2
146 Zambia 12238 T 2 2
147 Zambia 12239 G 2 2
148 Zambia 12240 A 2 2
149 Zambia 12241 C 2 2
150 Zambia 12242 C 2 2
151 Zambia 12243 G 2 2
152 Zambia 12244 T 2 2
153 Zambia 12245 G 2 2
154 Zambia 12246 A 2 2
155 Zambia 12247 T 2 2
156 Zambia 12248 G 2 2
157 Zambia 12249 C 2 2
158 Zambia 12250 A 2 2
159 Zambia 12251 G 2 2
160 Zambia 12252 C 2 2
161 Zambia 12253 C 2 2
162 Zambia 12254 A 2 2
163 Zambia 12255 T 2 2
164 Zambia 12256 G 2 2
165 Zambia 12257 C 2 2
166 Zambia 12258 A 2 2
167 Zambia 12259 A 2 2
168 Zambia 12260 C 2 2
169 Zambia 12261 G 2 2
170 Zambia 12262 T 2 2
171 Zambia 12263 A 2 2
172 Zambia 12264 A 2 2
173 Zambia 12265 G 2 2
174 Zambia 12266 T 2 2
175 Zambia 12267 T 2 2
176 Zambia 12268 G 2 2
177 Zambia 12269 G 2 2
178 Zambia 12270 A 2 2
179 Zambia 12271 A 2 2
180 Zambia 12272 A 2 2
181 Zambia 12273 A 2 2
182 Zambia 12274 G 2 2
183 Zambia 12275 A 2 2
184 Zambia 12276 T 2 2
185 Zambia 12277 G 2 2
186 Zambia 12278 G 2 2
187 Zambia 12279 C 2 2
188 Zambia 12280 T 2 2
189 Zambia 12281 G 2 2
190 Zambia 12282 A 2 2
191 Zambia 12283 T 2 2
192 Zambia 12284 C 2 2
193 Zambia 12285 A 2 2
194 Zambia 12286 A 2 2
195 Zambia 12287 G 2 2
196 Zambia 12288 C 2 2
197 Zambia 12289 T 2 2
198 Zambia 12290 A 2 2
199 Zambia 12291 T 2 2
200 Zambia 12292 G 2 2
201 Zambia 12293 A 2 2
202 Zambia 12294 C 2 2
203 Zambia 12295 C 2 2
204 Zambia 12296 C 2 2
205 Zambia 12297 A 2 2
206 Zambia 12298 A 2 2
207 Zambia 12299 A 2 2
208 Zambia 12300 T 2 2
209 Zambia 12301 G 2 2
210 Zambia 12302 T 2 2
211 Zambia 12303 A 2 2
212 Zambia 12304 T 2 2
213 Zambia 12305 A 2 2
214 Zambia 12306 A 2 2
215 Zambia 12307 A 2 2
216 Zambia 12308 C 2 2
217 Zambia 12309 A 2 2
218 Zambia 12310 G 2 2
219 Zambia 12311 G 2 2
220 Zambia 12312 C 2 2
221 Zambia 12313 T 2 2
222 Zambia 12314 A 2 2
223 Zambia 12315 G 2 2
224 Zambia 12316 A 2 2
225 Zambia 12317 T 2 2
226 Zambia 12318 C 2 2
227 Zambia 12319 T 2 2
228 Zambia 12320 G 2 2
229 Zambia 12321 A 2 2
230 Zambia 12322 G 2 2
231 Zambia 12323 G 2 2
232 Zambia 12324 A 2 2
233 Zambia 12325 C 2 2
234 Zambia 12326 A 2 2
235 Zambia 12327 A 2 2
236 Zambia 12328 G 2 2
237 Zambia 12329 A 2 2
238 Zambia 12330 G 2 2
239 Zambia 12331 G 2 2
240 Zambia 12332 G 2 2
241 Zambia 12333 C 2 2
242 Zambia 12334 A 2 2
243 Zambia 12335 A 2 2
244 Zambia 12336 A 2 2
245 Zambia 12337 A 2 2
246 Zambia 12338 G 2 2
247 Zambia 12339 T 2 2
248 Zambia 12340 T 2 2
249 Zambia 12341 A 2 2
250 Zambia 12342 C 2 2
251 Zambia 12343 T 2 2
252 Zambia 12344 A 2 2
253 Zambia 12345 G 2 2
254 Zambia 12346 T 2 2
255 Zambia 12347 G 2 2
256 Zambia 12348 C 2 2
257 Zambia 12349 T 2 2
258 Zambia 12350 A 2 2
259 Zambia 12351 T 2 2
260 Zambia 12352 G 2 2
261 Zambia 12353 C 2 2
262 Zambia 12354 A 2 2
263 Zambia 12355 G 2 2
264 Zambia 12356 A 2 2
265 Zambia 12357 C 2 2
266 Zambia 12358 A 2 2
267 Zambia 12359 A 2 2
268 Zambia 12360 T 2 2
269 Zambia 12361 G 2 2
270 Zambia 12362 C 2 2
271 Zambia 12363 T 2 2
272 Zambia 12364 T 2 2
273 Zambia 12365 T 2 2
274 Zambia 12366 T 2 2
275 Zambia 12367 C 2 2
276 Zambia 12368 A 2 2
277 Zambia 12369 C 2 2
278 Zambia 12370 T 2 2
279 Zambia 12371 A 2 2
280 Zambia 12372 T 2 2
281 Zambia 12373 G 2 2
282 Zambia 12374 C 2 2
283 Zambia 12375 T 2 2
284 Zambia 12376 T 2 2
285 Zambia 12377 A 2 2
286 Zambia 12378 G 2 2
287 Zambia 12379 A 2 2
288 Zambia 12380 A 2 2
289 Zambia 12381 A 2 2
290 Zambia 12382 G 2 2
291 Zambia 12383 T 2 2
292 Zambia 12384 T 2 2
293 Zambia 12385 G 2 2
294 Zambia 12386 G 2 2
295 Zambia 12387 A 2 2
296 Zambia 12388 T 2 2
297 Zambia 12389 A 2 2
298 Zambia 12390 A 2 2
299 Zambia 12391 T 2 2
300 Zambia 12392 G 2 2
301 Zambia 12393 A 2 2
302 Zambia 12394 T 2 2
303 Zambia 12395 G 2 2
304 Zambia 12396 C 2 2
305 Zambia 12397 A 2 2
306 Zambia 12398 C 2 2
307 Zambia 12399 T 2 2
308 Zambia 12400 C 2 2
309 Zambia 12401 A 2 2
310 Zambia 12402 A 2 2
311 Zambia 12403 C 2 2
312 Zambia 12404 A 2 2
313 Zambia 12405 A 2 2
314 Zambia 12406 C 2 2
315 Zambia 12407 A 2 2
316 Zambia 12408 T 2 2
317 Zambia 12409 T 2 2
318 Zambia 12410 A 2 2
319 Zambia 12411 T 2 2
320 Zambia 12412 C 2 2
321 Zambia 12413 A 2 2
322 Zambia 12414 A 2 2
323 Zambia 12415 C 2 2
324 Zambia 12416 A 2 2
325 Zambia 12417 A 2 2
326 Zambia 12418 T 2 2
327 Zambia 12419 G 2 2
328 Zambia 12420 C 2 2
329 Zambia 12421 A 2 2
330 Zambia 12422 A 2 2
331 Zambia 12423 G 2 2
332 Zambia 12424 A 2 2
333 Zambia 12425 G 2 2
334 Zambia 12426 A 2 2
335 Zambia 12427 T 2 2
336 Zambia 12428 G 2 2
337 Zambia 12429 G 2 2
338 Zambia 12430 T 2 2
339 Zambia 12431 T 2 2
340 Zambia 12432 G 2 2
341 Zambia 12433 T 2 2
342 Zambia 12434 G 2 2
343 Zambia 12435 T 2 2
344 Zambia 12436 T 2 2
345 Zambia 12437 C 2 2
346 Zambia 12438 C 2 2
347 Zambia 12439 C 2 2
348 Zambia 12440 T 2 2
349 Zambia 12441 T 2 2
350 Zambia 12442 G 2 2
351 Zambia 12443 A 2 2
352 Zambia 12444 A 2 2
353 Zambia 12445 C 2 2
354 Zambia 12446 A 2 2
355 Zambia 12447 T 2 2
356 Zambia 12448 A 2 2
357 Zambia 12449 A 2 2
358 Zambia 12450 T 2 2
359 Zambia 12451 A 2 2
360 Zambia 12452 C 2 2
361 Zambia 12453 C 2 2
362 Zambia 12454 T 2 2
363 Zambia 12455 C 2 2
364 Zambia 12456 T 2 2
365 Zambia 12457 T 2 2
366 Zambia 12458 A 2 2
367 Zambia 12459 C 2 2
368 Zambia 12460 A 2 2
369 Zambia 12461 A 2 2
370 Zambia 12462 C 2 2
371 Zambia 12463 A 2 2
372 Zambia 12464 G 2 2
373 Zambia 12465 C 2 2
374 Zambia 12466 A 2 2
375 Zambia 12467 G 2 2
376 Zambia 12468 C 2 2
377 Zambia 12469 C 2 2
378 Zambia 12470 A 2 2
379 Zambia 12471 A 2 2
380 Zambia 12472 A 2 2
381 Zambia 12473 C 2 2
382 Zambia 12474 T 2 2
383 Zambia 12475 A 2 2
384 Zambia 12476 A 2 2
385 Zambia 12477 T 2 2
386 Zambia 12478 G 2 2
387 Zambia 12479 G 2 2
388 Zambia 12480 T 2 2
389 Zambia 12481 T 2 2
390 Zambia 12482 G 2 2
391 Zambia 12483 T 2 2
392 Zambia 12484 C 2 2
393 Zambia 12485 A 2 2
394 Zambia 12486 T 2 2
395 Zambia 12487 A 2 2
396 Zambia 12488 C 2 2
397 Zambia 12489 C 2 2
398 Zambia 12490 A 2 2
399 Zambia 12491 G 2 2
400 Zambia 12492 A 2 2
401 Zambia 12493 C 2 2
402 Zambia 12494 T 2 2
403 Zambia 12495 A 2 2
404 Zambia 12496 T 2 2
405 Zambia 12497 A 2 2
406 Zambia 12498 A 2 2
407 Zambia 12499 C 2 2
408 Zambia 12500 A 2 2
409 Zambia 12501 C 2 2
410 Zambia 12502 A 2 2
411 Zambia 12503 T 2 2
412 Zambia 12504 A 2 2
413 Zambia 12505 T 2 2
414 Zambia 12506 A 2 2
415 Zambia 12507 A 2 2
416 Zambia 12508 A 2 2
417 Zambia 12509 A 2 2
418 Zambia 12510 A 2 2
419 Zambia 12511 T 2 2
420 Zambia 12512 A 2 2
421 Zambia 12513 C 2 2
422 Zambia 12514 G 2 2
423 Zambia 12515 T 2 2
424 Zambia 12516 G 2 2
425 Zambia 12517 T 2 2
426 Zambia 12518 G 2 2
427 Zambia 12519 A 2 2
428 Zambia 12520 T 2 2
429 Zambia 12521 G 2 2
430 Zambia 12522 G 2 2
431 Zambia 12523 T 2 2
432 Zambia 12524 A 2 2
433 Zambia 12525 C 2 2
434 Zambia 12526 A 2 2
435 Zambia 12527 A 2 2
436 Zambia 12528 C 2 2
437 Zambia 12529 A 2 2
438 Zambia 12530 T 2 2
439 Zambia 12531 T 2 2
440 Zambia 12532 T 2 2
441 Zambia 12533 A 2 2
442 Zambia 12534 C 2 2
443 Zambia 12535 T 2 2
444 Zambia 12536 T 2 2
445 Zambia 12537 A 2 2
446 Zambia 12538 T 2 2
447 Zambia 12539 G 2 2
448 Zambia 12540 C 2 2
449 Zambia 12541 A 2 2
450 Zambia 12542 T 2 2
451 Zambia 12543 C 2 2
452 Zambia 12544 A 2 2
453 Zambia 12545 G 2 2
454 Zambia 12546 C 2 2
455 Zambia 12547 A 2 2
456 Zambia 12548 T 2 2
457 Zambia 12549 T 2 2
458 Zambia 12550 G 2 2
459 Zambia 12551 T 2 2
460 Zambia 12552 G 2 2
461 Zambia 12553 G 2 2
462 Zambia 12554 G 2 2
463 Zambia 12555 A 2 2
464 Zambia 12556 A 2 2
465 Zambia 12557 A 2 2
466 Zambia 12558 T 2 2
467 Zambia 12559 C 2 2
468 Zambia 12560 C 2 2
469 Zambia 12561 A 2 2
470 Zambia 12562 A 2 2
471 Zambia 12563 C 2 2
472 Zambia 12564 A 2 2
473 Zambia 12565 G 2 2
474 Zambia 12566 G 2 2
475 Zambia 12567 T 2 2
476 Zambia 12568 T 2 2
477 Zambia 12569 G 2 2
478 Zambia 12570 T 2 2
479 Zambia 12571 A 2 2
480 Zambia 12572 G 2 2
481 Zambia 12573 A 2 2
482 Zambia 12574 T 2 2
483 Zambia 12575 G 2 2
484 Zambia 12576 C 2 2
485 Zambia 12577 A 2 2
486 Zambia 12578 G 2 2
487 Zambia 12579 A 2 2
488 Zambia 12580 T 2 2
489 Zambia 12581 A 2 2
490 Zambia 12582 G 2 2
491 Zambia 12583 T 2 2
492 Zambia 12584 A 2 2
493 Zambia 12585 A 2 2
494 Zambia 12586 A 2 2
495 Zambia 12587 A 2 2
496 Zambia 12588 T 2 2
497 Zambia 12589 T 2 2
498 Zambia 12590 G 2 2
499 Zambia 12591 T 2 2
500 Zambia 12592 T 2 2
501 Zambia 12593 C 2 2
502 Zambia 12594 A 2 2
503 Zambia 12595 A 2 2
504 Zambia 12596 C 2 2
505 Zambia 12597 T 2 2
506 Zambia 12598 T 2 2
507 Zambia 12599 A 2 2
508 Zambia 12600 G 2 2
509 Zambia 12601 T 2 2
510 Zambia 12602 G 2 2
511 Zambia 12603 A 2 2
512 Zambia 12604 A 2 2
513 Zambia 12605 A 2 2
514 Zambia 12606 T 2 2
515 Zambia 12607 T 2 2
516 Zambia 12608 A 2 2
517 Zambia 12609 G 2 2
518 Zambia 12610 T 2 2
519 Zambia 12611 A 2 2
520 Zambia 12612 T 2 2
521 Zambia 12613 G 2 2
522 Zambia 12614 G 2 2
523 Zambia 12615 A 2 2
524 Zambia 12616 C 2 2
525 Zambia 12617 A 2 2
526 Zambia 12618 A 2 2
527 Zambia 12619 T 2 2
528 Zambia 12620 T 2 2
529 Zambia 12621 C 2 2
530 Zambia 12622 A 2 2
531 Zambia 12623 C 2 2
532 Zambia 12624 C 2 2
533 Zambia 12625 T 2 2
534 Zambia 12626 A 2 2
535 Zambia 12627 A 2 2
536 Zambia 12628 T 2 2
537 Zambia 12629 T 2 2
538 Zambia 12630 T 2 2
539 Zambia 12631 A 2 2
540 Zambia 12632 G 2 2
541 Zambia 12633 C 2 2
542 Zambia 12634 A 2 2
543 Zambia 12635 T 2 2
544 Zambia 12636 G 2 2
545 Zambia 12637 G 2 2
546 Zambia 12638 C 2 2
547 Zambia 12639 C 2 2
548 Zambia 12640 T 2 2
549 Zambia 12641 C 2 2
550 Zambia 12642 T 2 2
551 Zambia 12643 T 2 2
552 Zambia 12644 A 2 2
553 Zambia 12645 T 2 2
554 Zambia 12646 T 2 2
555 Zambia 12647 G 2 2
556 Zambia 12648 T 2 2
557 Zambia 12649 A 2 2
558 Zambia 12650 A 2 2
559 Zambia 12651 C 2 2
560 Zambia 12652 A 2 2
561 Zambia 12653 G 2 2
562 Zambia 12654 C 2 2
563 Zambia 12655 T 2 2
564 Zambia 12656 T 2 2
565 Zambia 12657 T 2 2
566 Zambia 12658 A 2 2
567 Zambia 12659 A 2 2
568 Zambia 12660 G 2 2
569 Zambia 12661 G 2 2
570 Zambia 12662 G 2 2
571 Zambia 12663 C 2 2
572 Zambia 12664 C 2 2
573 Zambia 12665 A 2 2
574 Zambia 12666 A 2 2
575 Zambia 12667 T 2 2
576 Zambia 12668 T 2 2
577 Zambia 12669 C 2 2
578 Zambia 12670 T 2 2
579 Zambia 12671 G 2 2
580 Zambia 12672 C 2 2
581 Zambia 12673 T 2 2
582 Zambia 12674 G 2 2
583 Zambia 12675 T 2 2
584 Zambia 12676 C 2 2
585 Zambia 12677 A 2 2
586 Zambia 12678 A 2 2
587 Zambia 12679 A 2 2
588 Zambia 12680 T 2 2
589 Zambia 12681 T 2 2
590 Zambia 12682 A 2 2
591 Zambia 12683 C 2 2
592 Zambia 12684 A 2 2
593 Zambia 12685 G 2 2