National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84                               1 1    
C   6                                      
D   39                                      
E   27                                      
F   15                                      
G   9                                      
I   30                                      
K   45                                      
L   54                                      
M   27                                      
N   39                                      
P   18                       1              
Q   33                                      
R   21                                      
S   45                                      
T   39             2                        
V   39                                      
W   6                                      
Y   18                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Uganda 12092 G 133 133
1 Uganda 12093 C 133 133
2 Uganda 12094 T 133 133
3 Uganda 12095 A 133 133
4 Uganda 12096 T 133 133
5 Uganda 12097 A 133 133
6 Uganda 12098 G 133 133
7 Uganda 12099 C 133 133
8 Uganda 12100 C 133 133
9 Uganda 12101 T 133 133
10 Uganda 12102 C 133 133
11 Uganda 12103 A 133 133
12 Uganda 12104 G 133 133
13 Uganda 12105 A 133 133
14 Uganda 12106 G 133 133
15 Uganda 12107 T 133 133
16 Uganda 12108 T 133 133
17 Uganda 12109 T 133 133
18 Uganda 12110 A 133 133
19 Uganda 12111 G 133 133
20 Uganda 12112 T 133 133
21 Uganda 12113 T 133 133
22 Uganda 12114 C 133 133
23 Uganda 12115 C 133 133
24 Uganda 12116 C 133 133
25 Uganda 12117 T 133 133
26 Uganda 12118 T 133 133
27 Uganda 12119 C 133 133
28 Uganda 12120 C 133 133
29 Uganda 12121 A 133 133
30 Uganda 12122 T 133 133
31 Uganda 12123 C 133 133
32 Uganda 12124 A 133 133
33 Uganda 12125 T 133 133
34 Uganda 12126 A 133 133
35 Uganda 12127 T 133 133
36 Uganda 12128 G 133 133
37 Uganda 12129 C 133 133
38 Uganda 12130 A 133 133
39 Uganda 12131 G 133 133
40 Uganda 12132 C 133 133
41 Uganda 12133 T 133 133
42 Uganda 12134 T 133 133
43 Uganda 12135 T 133 133
44 Uganda 12136 T 133 133
45 Uganda 12137 G 133 133
46 Uganda 12138 C 133 133
47 Uganda 12139 T 133 133
48 Uganda 12140 A 133 133
49 Uganda 12141 C 133 133
50 Uganda 12142 T 133 133
51 Uganda 12143 G 133 133
52 Uganda 12144 C 133 133
53 Uganda 12145 T 133 133
54 Uganda 12146 C 133 133
55 Uganda 12147 A 133 133
56 Uganda 12148 A 133 133
57 Uganda 12149 G 133 133
58 Uganda 12150 A 133 133
59 Uganda 12151 A 133 133
60 Uganda 12152 G 133 133
61 Uganda 12153 C 133 133
62 Uganda 12154 T 133 133
63 Uganda 12155 T 133 133
64 Uganda 12156 A 133 133
65 Uganda 12157 T 133 133
66 Uganda 12158 G 133 133
67 Uganda 12159 A 133 133
68 Uganda 12160 G 133 133
69 Uganda 12161 C 133 133
70 Uganda 12162 A 133 133
71 Uganda 12163 G 133 133
72 Uganda 12164 G 133 133
73 Uganda 12165 C 133 133
74 Uganda 12166 T 133 133
75 Uganda 12167 G 133 133
76 Uganda 12168 T 133 133
77 Uganda 12169 T 133 133
78 Uganda 12170 G 133 133
79 Uganda 12171 C 133 133
80 Uganda 12172 T 133 133
81 Uganda 12173 A 133 133
82 Uganda 12174 A 133 133
83 Uganda 12175 T 133 133
84 Uganda 12176 G 133 133
85 Uganda 12177 G 133 133
86 Uganda 12178 T 133 133
87 Uganda 12179 G 133 133
88 Uganda 12180 A 133 133
89 Uganda 12181 T 133 133
90 Uganda 12182 T 133 133
91 Uganda 12183 C 133 133
92 Uganda 12184 T 133 133
93 Uganda 12185 G 133 133
94 Uganda 12186 A 133 133
95 Uganda 12187 A 133 133
96 Uganda 12188 G 133 133
97 Uganda 12189 T 133 133
98 Uganda 12190 T 133 133
99 Uganda 12191 G 133 133
100 Uganda 12192 T 133 133
101 Uganda 12193 T 133 133
102 Uganda 12194 C 133 133
103 Uganda 12195 T 133 133
104 Uganda 12196 T 133 133
105 Uganda 12197 A 133 133
106 Uganda 12198 A 133 133
107 Uganda 12199 A 133 133
108 Uganda 12200 A 133 133
109 Uganda 12201 A 133 133
110 Uganda 12202 G 133 133
111 Uganda 12203 T 133 133
112 Uganda 12204 T 133 133
113 Uganda 12205 G 133 133
114 Uganda 12206 A 133 133
115 Uganda 12207 A 133 133
116 Uganda 12208 G 133 133
117 Uganda 12209 A 133 133
118 Uganda 12210 A 133 133
119 Uganda 12211 G 133 133
120 Uganda 12212 T 133 133
121 Uganda 12213 C 133 133
122 Uganda 12214 T 133 133
123 Uganda 12215 T 133 133
124 Uganda 12216 T 133 133
125 Uganda 12217 G 133 133
126 Uganda 12218 A 133 133
127 Uganda 12219 A 133 133
128 Uganda 12220 T 133 133
129 Uganda 12221 G 133 133
130 Uganda 12222 T 133 133
131 Uganda 12223 G 133 133
132 Uganda 12224 G 133 133
133 Uganda 12225 C 133 133
134 Uganda 12226 T 133 133
135 Uganda 12227 A 133 133
136 Uganda 12228 A 133 133
137 Uganda 12229 A 133 133
138 Uganda 12230 T 133 133
139 Uganda 12231 C 133 133
140 Uganda 12232 T 133 133
141 Uganda 12233 G 133 133
142 Uganda 12234 A 133 133
143 Uganda 12235 A 133 133
144 Uganda 12236 T 133 133
145 Uganda 12237 T 133 133
146 Uganda 12238 T 133 133
147 Uganda 12239 G 133 133
148 Uganda 12240 A 133 133
149 Uganda 12241 C 133 133
150 Uganda 12242 C 133 133
151 Uganda 12243 G 133 133
152 Uganda 12244 T 133 133
153 Uganda 12245 G 133 133
154 Uganda 12246 A 133 133
155 Uganda 12247 T 133 133
156 Uganda 12248 G 133 133
157 Uganda 12249 C 133 133
158 Uganda 12250 A 133 133
159 Uganda 12251 G 133 133
160 Uganda 12252 C 133 133
161 Uganda 12253 C 133 133
162 Uganda 12254 A 133 133
163 Uganda 12255 T 133 133
164 Uganda 12256 G 133 133
165 Uganda 12257 C 133 133
166 Uganda 12258 A 133 133
167 Uganda 12259 A 133 133
168 Uganda 12260 C 133 133
169 Uganda 12261 G 133 133
170 Uganda 12262 T 133 133
171 Uganda 12263 A 133 133
172 Uganda 12264 A 133 133
173 Uganda 12265 G 133 133
174 Uganda 12266 T 133 133
175 Uganda 12267 T 133 133
176 Uganda 12268 G 133 133
177 Uganda 12269 G 133 133
178 Uganda 12270 A 133 133
179 Uganda 12271 A 133 133
180 Uganda 12272 A 133 133
181 Uganda 12273 A 133 133
182 Uganda 12274 G 133 133
183 Uganda 12275 A 133 133
184 Uganda 12276 T 133 133
185 Uganda 12277 G 133 133
186 Uganda 12278 G 133 133
187 Uganda 12279 C 133 133
188 Uganda 12280 T 133 133
189 Uganda 12281 G 133 133
190 Uganda 12282 A 133 133
191 Uganda 12283 T 133 133
192 Uganda 12284 C 133 133
193 Uganda 12285 A 133 133
194 Uganda 12286 A 133 133
195 Uganda 12287 G 133 133
196 Uganda 12288 C 133 133
197 Uganda 12289 T 133 133
198 Uganda 12290 A 133 133
199 Uganda 12291 T 133 133
200 Uganda 12292 G 133 133
201 Uganda 12293 A 133 133
202 Uganda 12294 C 133 133
203 Uganda 12295 C 133 133
204 Uganda 12296 C 133 133
205 Uganda 12297 A 133 133
206 Uganda 12298 A 133 133
207 Uganda 12299 A 133 133
208 Uganda 12300 T 133 133
209 Uganda 12301 G 133 133
210 Uganda 12302 T 133 133
211 Uganda 12303 A 133 133
212 Uganda 12304 T 133 133
213 Uganda 12305 A 133 133
214 Uganda 12306 A 133 133
215 Uganda 12307 A 133 133
216 Uganda 12308 C 133 133
217 Uganda 12309 A 133 133
218 Uganda 12310 G 133 133
219 Uganda 12311 G 133 133
220 Uganda 12312 C T 133 131 Ala4016Val
221 Uganda 12313 T 133 133
222 Uganda 12314 A 133 133
223 Uganda 12315 G 133 133
224 Uganda 12316 A 133 133
225 Uganda 12317 T 133 133
226 Uganda 12318 C 133 133
227 Uganda 12319 T 133 133
228 Uganda 12320 G 133 133
229 Uganda 12321 A 133 133
230 Uganda 12322 G 133 133
231 Uganda 12323 G 133 133
232 Uganda 12324 A 133 133
233 Uganda 12325 C 133 133
234 Uganda 12326 A 133 133
235 Uganda 12327 A 133 133
236 Uganda 12328 G 133 133
237 Uganda 12329 A 133 133
238 Uganda 12330 G 133 133
239 Uganda 12331 G 133 133
240 Uganda 12332 G 133 133
241 Uganda 12333 C 133 133
242 Uganda 12334 A 133 133
243 Uganda 12335 A 133 133
244 Uganda 12336 A 133 133
245 Uganda 12337 A 133 133
246 Uganda 12338 G 133 133
247 Uganda 12339 T 133 133
248 Uganda 12340 T 133 133
249 Uganda 12341 A 133 133
250 Uganda 12342 C 133 133
251 Uganda 12343 T 133 133
252 Uganda 12344 A 133 133
253 Uganda 12345 G 133 133
254 Uganda 12346 T 133 133
255 Uganda 12347 G 133 133
256 Uganda 12348 C 133 133
257 Uganda 12349 T 133 133
258 Uganda 12350 A 133 133
259 Uganda 12351 T 133 133
260 Uganda 12352 G 133 133
261 Uganda 12353 C 133 133
262 Uganda 12354 A 133 133
263 Uganda 12355 G 133 133
264 Uganda 12356 A 133 133
265 Uganda 12357 C T 133 131 Thr4031Ile
266 Uganda 12358 A 133 133
267 Uganda 12359 A 133 133
268 Uganda 12360 T 133 133
269 Uganda 12361 G 133 133
270 Uganda 12362 C 133 133
271 Uganda 12363 T 133 133
272 Uganda 12364 T 133 133
273 Uganda 12365 T 133 133
274 Uganda 12366 T 133 133
275 Uganda 12367 C 133 133
276 Uganda 12368 A 133 133
277 Uganda 12369 C 133 133
278 Uganda 12370 T 133 133
279 Uganda 12371 A 133 133
280 Uganda 12372 T 133 133
281 Uganda 12373 G 133 133
282 Uganda 12374 C 133 133
283 Uganda 12375 T 133 133
284 Uganda 12376 T 133 133
285 Uganda 12377 A 133 133
286 Uganda 12378 G 133 133
287 Uganda 12379 A 133 133
288 Uganda 12380 A 133 133
289 Uganda 12381 A 133 133
290 Uganda 12382 G 133 133
291 Uganda 12383 T 133 133
292 Uganda 12384 T 133 133
293 Uganda 12385 G 133 133
294 Uganda 12386 G 133 133
295 Uganda 12387 A 133 133
296 Uganda 12388 T 133 133
297 Uganda 12389 A 133 133
298 Uganda 12390 A 133 133
299 Uganda 12391 T 133 133
300 Uganda 12392 G 133 133
301 Uganda 12393 A 133 133
302 Uganda 12394 T 133 133
303 Uganda 12395 G 133 133
304 Uganda 12396 C 133 133
305 Uganda 12397 A 133 133
306 Uganda 12398 C 133 133
307 Uganda 12399 T 133 133
308 Uganda 12400 C 133 133
309 Uganda 12401 A 133 133
310 Uganda 12402 A 133 133
311 Uganda 12403 C 133 133
312 Uganda 12404 A 133 133
313 Uganda 12405 A 133 133
314 Uganda 12406 C 133 133
315 Uganda 12407 A 133 133
316 Uganda 12408 T 133 133
317 Uganda 12409 T 133 133
318 Uganda 12410 A 133 133
319 Uganda 12411 T 133 133
320 Uganda 12412 C 133 133
321 Uganda 12413 A 133 133
322 Uganda 12414 A 133 133
323 Uganda 12415 C 133 133
324 Uganda 12416 A 133 133
325 Uganda 12417 A 133 133
326 Uganda 12418 T 133 133
327 Uganda 12419 G A 133 132 Ala4052Thr
328 Uganda 12420 C 133 133
329 Uganda 12421 A 133 133
330 Uganda 12422 A 133 133
331 Uganda 12423 G 133 133
332 Uganda 12424 A 133 133
333 Uganda 12425 G 133 133
334 Uganda 12426 A 133 133
335 Uganda 12427 T 133 133
336 Uganda 12428 G 133 133
337 Uganda 12429 G 133 133
338 Uganda 12430 T 133 133
339 Uganda 12431 T 133 133
340 Uganda 12432 G 133 133
341 Uganda 12433 T 133 133
342 Uganda 12434 G 133 133
343 Uganda 12435 T 133 133
344 Uganda 12436 T 133 133
345 Uganda 12437 C 133 133
346 Uganda 12438 C 133 133
347 Uganda 12439 C T 133 131 Pro4058Pro
348 Uganda 12440 T 133 133
349 Uganda 12441 T 133 133
350 Uganda 12442 G 133 133
351 Uganda 12443 A 133 133
352 Uganda 12444 A 133 133
353 Uganda 12445 C 133 133
354 Uganda 12446 A 133 133
355 Uganda 12447 T 133 133
356 Uganda 12448 A 133 133
357 Uganda 12449 A 133 133
358 Uganda 12450 T 133 133
359 Uganda 12451 A 133 133
360 Uganda 12452 C 133 133
361 Uganda 12453 C 133 133
362 Uganda 12454 T 133 133
363 Uganda 12455 C 133 133
364 Uganda 12456 T 133 133
365 Uganda 12457 T 133 133
366 Uganda 12458 A 133 133
367 Uganda 12459 C 133 133
368 Uganda 12460 A 133 133
369 Uganda 12461 A 133 133
370 Uganda 12462 C 133 133
371 Uganda 12463 A 133 133
372 Uganda 12464 G 133 133
373 Uganda 12465 C 133 133
374 Uganda 12466 A 133 133
375 Uganda 12467 G 133 133
376 Uganda 12468 C 133 133
377 Uganda 12469 C 133 133
378 Uganda 12470 A 133 133
379 Uganda 12471 A 133 133
380 Uganda 12472 A 133 133
381 Uganda 12473 C 133 133
382 Uganda 12474 T 133 133
383 Uganda 12475 A 133 133
384 Uganda 12476 A 133 133
385 Uganda 12477 T 133 133
386 Uganda 12478 G 133 133
387 Uganda 12479 G 133 133
388 Uganda 12480 T 133 133
389 Uganda 12481 T 133 133
390 Uganda 12482 G 133 133
391 Uganda 12483 T 133 133
392 Uganda 12484 C 133 133
393 Uganda 12485 A 133 133
394 Uganda 12486 T 133 133
395 Uganda 12487 A 133 133
396 Uganda 12488 C 133 133
397 Uganda 12489 C 133 133
398 Uganda 12490 A 133 133
399 Uganda 12491 G 133 133
400 Uganda 12492 A 133 133
401 Uganda 12493 C 133 133
402 Uganda 12494 T 133 133
403 Uganda 12495 A 133 133
404 Uganda 12496 T 133 133
405 Uganda 12497 A 133 133
406 Uganda 12498 A 133 133
407 Uganda 12499 C 133 133
408 Uganda 12500 A 133 133
409 Uganda 12501 C 133 133
410 Uganda 12502 A 133 133
411 Uganda 12503 T 133 133
412 Uganda 12504 A 133 133
413 Uganda 12505 T 133 133
414 Uganda 12506 A 133 133
415 Uganda 12507 A 133 133
416 Uganda 12508 A 133 133
417 Uganda 12509 A 133 133
418 Uganda 12510 A 133 133
419 Uganda 12511 T 133 133
420 Uganda 12512 A 133 133
421 Uganda 12513 C 133 133
422 Uganda 12514 G 133 133
423 Uganda 12515 T 133 133
424 Uganda 12516 G 133 133
425 Uganda 12517 T 133 133
426 Uganda 12518 G 133 133
427 Uganda 12519 A 133 133
428 Uganda 12520 T 133 133
429 Uganda 12521 G 133 133
430 Uganda 12522 G 133 133
431 Uganda 12523 T 133 133
432 Uganda 12524 A 133 133
433 Uganda 12525 C T 133 132 Thr4087Ile
434 Uganda 12526 A 133 133
435 Uganda 12527 A 133 133
436 Uganda 12528 C 133 133
437 Uganda 12529 A 133 133
438 Uganda 12530 T 133 133
439 Uganda 12531 T 133 133
440 Uganda 12532 T 133 133
441 Uganda 12533 A 133 133
442 Uganda 12534 C 133 133
443 Uganda 12535 T 133 133
444 Uganda 12536 T 133 133
445 Uganda 12537 A 133 133
446 Uganda 12538 T 133 133
447 Uganda 12539 G 133 133
448 Uganda 12540 C 133 133
449 Uganda 12541 A 133 133
450 Uganda 12542 T 133 133
451 Uganda 12543 C 133 133
452 Uganda 12544 A 133 133
453 Uganda 12545 G 133 133
454 Uganda 12546 C 133 133
455 Uganda 12547 A 133 133
456 Uganda 12548 T 133 133
457 Uganda 12549 T 133 133
458 Uganda 12550 G 133 133
459 Uganda 12551 T 133 133
460 Uganda 12552 G 133 133
461 Uganda 12553 G 133 133
462 Uganda 12554 G 133 133
463 Uganda 12555 A 133 133
464 Uganda 12556 A 133 133
465 Uganda 12557 A 133 133
466 Uganda 12558 T 133 133
467 Uganda 12559 C 133 133
468 Uganda 12560 C 133 133
469 Uganda 12561 A 133 133
470 Uganda 12562 A 133 133
471 Uganda 12563 C 133 133
472 Uganda 12564 A 133 133
473 Uganda 12565 G 133 133
474 Uganda 12566 G 133 133
475 Uganda 12567 T 133 133
476 Uganda 12568 T 133 133
477 Uganda 12569 G 133 133
478 Uganda 12570 T 133 133
479 Uganda 12571 A 133 133
480 Uganda 12572 G 133 133
481 Uganda 12573 A 133 133
482 Uganda 12574 T 133 133
483 Uganda 12575 G 133 133
484 Uganda 12576 C 133 133
485 Uganda 12577 A 133 133
486 Uganda 12578 G 133 133
487 Uganda 12579 A 133 133
488 Uganda 12580 T 133 133
489 Uganda 12581 A 133 133
490 Uganda 12582 G 133 133
491 Uganda 12583 T 133 133
492 Uganda 12584 A 133 133
493 Uganda 12585 A 133 133
494 Uganda 12586 A 133 133
495 Uganda 12587 A 133 133
496 Uganda 12588 T 133 133
497 Uganda 12589 T 133 133
498 Uganda 12590 G 133 133
499 Uganda 12591 T 133 133
500 Uganda 12592 T 133 133
501 Uganda 12593 C 133 133
502 Uganda 12594 A 133 133
503 Uganda 12595 A 133 133
504 Uganda 12596 C 133 133
505 Uganda 12597 T 133 133
506 Uganda 12598 T 133 133
507 Uganda 12599 A 133 133
508 Uganda 12600 G 133 133
509 Uganda 12601 T 133 133
510 Uganda 12602 G 133 133
511 Uganda 12603 A 133 133
512 Uganda 12604 A 133 133
513 Uganda 12605 A 133 133
514 Uganda 12606 T 133 133
515 Uganda 12607 T 133 133
516 Uganda 12608 A 133 133
517 Uganda 12609 G 133 133
518 Uganda 12610 T 133 133
519 Uganda 12611 A 133 133
520 Uganda 12612 T 133 133
521 Uganda 12613 G 133 133
522 Uganda 12614 G 133 133
523 Uganda 12615 A 133 133
524 Uganda 12616 C 133 133
525 Uganda 12617 A 133 133
526 Uganda 12618 A 133 133
527 Uganda 12619 T 133 133
528 Uganda 12620 T 133 133
529 Uganda 12621 C 133 133
530 Uganda 12622 A 133 133
531 Uganda 12623 C 133 133
532 Uganda 12624 C 133 133
533 Uganda 12625 T 133 133
534 Uganda 12626 A 133 133
535 Uganda 12627 A 133 133
536 Uganda 12628 T 133 133
537 Uganda 12629 T 133 133
538 Uganda 12630 T 133 133
539 Uganda 12631 A 133 133
540 Uganda 12632 G 133 133
541 Uganda 12633 C 133 133
542 Uganda 12634 A 133 133
543 Uganda 12635 T 133 133
544 Uganda 12636 G 133 133
545 Uganda 12637 G 133 133
546 Uganda 12638 C 133 133
547 Uganda 12639 C 133 133
548 Uganda 12640 T 133 133
549 Uganda 12641 C 133 133
550 Uganda 12642 T 133 133
551 Uganda 12643 T 133 133
552 Uganda 12644 A 133 133
553 Uganda 12645 T 133 133
554 Uganda 12646 T 133 133
555 Uganda 12647 G 133 133
556 Uganda 12648 T 133 133
557 Uganda 12649 A 133 133
558 Uganda 12650 A 133 133
559 Uganda 12651 C 133 133
560 Uganda 12652 A 133 133
561 Uganda 12653 G 133 133
562 Uganda 12654 C 133 133
563 Uganda 12655 T 133 133
564 Uganda 12656 T 133 133
565 Uganda 12657 T 133 133
566 Uganda 12658 A 133 133
567 Uganda 12659 A 133 133
568 Uganda 12660 G 133 133
569 Uganda 12661 G 133 133
570 Uganda 12662 G 133 133
571 Uganda 12663 C 133 133
572 Uganda 12664 C 133 133
573 Uganda 12665 A 133 133
574 Uganda 12666 A 133 133
575 Uganda 12667 T 133 133
576 Uganda 12668 T 133 133
577 Uganda 12669 C 133 133
578 Uganda 12670 T 133 133
579 Uganda 12671 G 133 133
580 Uganda 12672 C 133 133
581 Uganda 12673 T 133 133
582 Uganda 12674 G 133 133
583 Uganda 12675 T 133 133
584 Uganda 12676 C 133 133
585 Uganda 12677 A 133 133
586 Uganda 12678 A 133 133
587 Uganda 12679 A 133 133
588 Uganda 12680 T 133 133
589 Uganda 12681 T 133 133
590 Uganda 12682 A 133 133
591 Uganda 12683 C 133 133
592 Uganda 12684 A 133 133
593 Uganda 12685 G 133 133