National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84 2                               2    
C   6                                      
D   39                                      
E   27                                      
F   15         1                            
G   9                                      
I   30                                      
K   45                     1     1          
L   54                 2                    
M   27                                      
N   39                                      
P   18                       1              
Q   33                           1          
R   21                                      
S   45                 1                    
T   39 1           4     1                  
V   39         1   1                        
W   6                                      
Y   18                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Poland 12092 G 434 434
1 Poland 12093 C 434 434
2 Poland 12094 T 434 434
3 Poland 12095 A 434 434
4 Poland 12096 T 434 434
5 Poland 12097 A 434 434
6 Poland 12098 G 434 434
7 Poland 12099 C 434 434
8 Poland 12100 C 434 434
9 Poland 12101 T 434 434
10 Poland 12102 C 434 434
11 Poland 12103 A 434 434
12 Poland 12104 G 434 434
13 Poland 12105 A 434 434
14 Poland 12106 G 434 434
15 Poland 12107 T 434 434
16 Poland 12108 T 434 434
17 Poland 12109 T 434 434
18 Poland 12110 A 434 434
19 Poland 12111 G 434 434
20 Poland 12112 T 434 434
21 Poland 12113 T 434 434
22 Poland 12114 C 434 434
23 Poland 12115 C 434 434
24 Poland 12116 C 434 434
25 Poland 12117 T 434 434
26 Poland 12118 T 434 434
27 Poland 12119 C 434 434
28 Poland 12120 C 434 434
29 Poland 12121 A 434 434
30 Poland 12122 T 434 434
31 Poland 12123 C 434 434
32 Poland 12124 A 434 434
33 Poland 12125 T 434 434
34 Poland 12126 A 434 434
35 Poland 12127 T 434 434
36 Poland 12128 G 434 434
37 Poland 12129 C 434 434
38 Poland 12130 A 434 434
39 Poland 12131 G 434 434
40 Poland 12132 C T 434 433 Ala3956Val
41 Poland 12133 T 434 434
42 Poland 12134 T 434 434
43 Poland 12135 T 434 434
44 Poland 12136 T 434 434
45 Poland 12137 G 434 434
46 Poland 12138 C 434 434
47 Poland 12139 T 434 434
48 Poland 12140 A G 434 433 Thr3959Ala
49 Poland 12141 C 434 434
50 Poland 12142 T 434 434
51 Poland 12143 G 434 434
52 Poland 12144 C 434 434
53 Poland 12145 T 434 434
54 Poland 12146 C 434 434
55 Poland 12147 A 434 434
56 Poland 12148 A 434 434
57 Poland 12149 G 434 434
58 Poland 12150 A 434 434
59 Poland 12151 A 434 434
60 Poland 12152 G 434 434
61 Poland 12153 C 434 434
62 Poland 12154 T 434 434
63 Poland 12155 T 434 434
64 Poland 12156 A 434 434
65 Poland 12157 T 434 434
66 Poland 12158 G 434 434
67 Poland 12159 A 434 434
68 Poland 12160 G 434 434
69 Poland 12161 C 434 434
70 Poland 12162 A G 434 433 Gln3966Arg
71 Poland 12163 G 434 434
72 Poland 12164 G 434 434
73 Poland 12165 C 434 434
74 Poland 12166 T 434 434
75 Poland 12167 G T 434 433 Val3968Phe
76 Poland 12168 T 434 434
77 Poland 12169 T 434 434
78 Poland 12170 G 434 434
79 Poland 12171 C 434 434
80 Poland 12172 T 434 434
81 Poland 12173 A 434 434
82 Poland 12174 A 434 434
83 Poland 12175 T 434 434
84 Poland 12176 G 434 434
85 Poland 12177 G 434 434
86 Poland 12178 T 434 434
87 Poland 12179 G 434 434
88 Poland 12180 A 434 434
89 Poland 12181 T 434 434
90 Poland 12182 T 434 434
91 Poland 12183 C 434 434
92 Poland 12184 T 434 434
93 Poland 12185 G 434 434
94 Poland 12186 A 434 434
95 Poland 12187 A 434 434
96 Poland 12188 G 434 434
97 Poland 12189 T 434 434
98 Poland 12190 T 434 434
99 Poland 12191 G 434 434
100 Poland 12192 T 434 434
101 Poland 12193 T 434 434
102 Poland 12194 C 434 434
103 Poland 12195 T 434 434
104 Poland 12196 T 434 434
105 Poland 12197 A 434 434
106 Poland 12198 A 434 434
107 Poland 12199 A 434 434
108 Poland 12200 A 434 434
109 Poland 12201 A 434 434
110 Poland 12202 G T 434 433 Lys3979Asn
111 Poland 12203 T 434 434
112 Poland 12204 T 434 434
113 Poland 12205 G 434 434
114 Poland 12206 A 434 434
115 Poland 12207 A 434 434
116 Poland 12208 G 434 434
117 Poland 12209 A 434 434
118 Poland 12210 A 434 434
119 Poland 12211 G 434 434
120 Poland 12212 T 434 434
121 Poland 12213 C 434 434
122 Poland 12214 T 434 434
123 Poland 12215 T 434 434
124 Poland 12216 T 434 434
125 Poland 12217 G 434 434
126 Poland 12218 A 434 434
127 Poland 12219 A 434 434
128 Poland 12220 T 434 434
129 Poland 12221 G 434 434
130 Poland 12222 T 434 434
131 Poland 12223 G 434 434
132 Poland 12224 G 434 434
133 Poland 12225 C 434 434
134 Poland 12226 T 434 434
135 Poland 12227 A 434 434
136 Poland 12228 A 434 434
137 Poland 12229 A 434 434
138 Poland 12230 T 434 434
139 Poland 12231 C 434 434
140 Poland 12232 T 434 434
141 Poland 12233 G 434 434
142 Poland 12234 A 434 434
143 Poland 12235 A 434 434
144 Poland 12236 T 434 434
145 Poland 12237 T 434 434
146 Poland 12238 T C 434 433 Phe3991Phe
147 Poland 12239 G 434 434
148 Poland 12240 A 434 434
149 Poland 12241 C 434 434
150 Poland 12242 C 434 434
151 Poland 12243 G 434 434
152 Poland 12244 T 434 434
153 Poland 12245 G 434 434
154 Poland 12246 A 434 434
155 Poland 12247 T 434 434
156 Poland 12248 G 434 434
157 Poland 12249 C 434 434
158 Poland 12250 A 434 434
159 Poland 12251 G 434 434
160 Poland 12252 C 434 434
161 Poland 12253 C 434 434
162 Poland 12254 A 434 434
163 Poland 12255 T 434 434
164 Poland 12256 G 434 434
165 Poland 12257 C 434 434
166 Poland 12258 A 434 434
167 Poland 12259 A 434 434
168 Poland 12260 C 434 434
169 Poland 12261 G 434 434
170 Poland 12262 T 434 434
171 Poland 12263 A 434 434
172 Poland 12264 A 434 434
173 Poland 12265 G 434 434
174 Poland 12266 T 434 434
175 Poland 12267 T 434 434
176 Poland 12268 G 434 434
177 Poland 12269 G 434 434
178 Poland 12270 A 434 434
179 Poland 12271 A 434 434
180 Poland 12272 A 434 434
181 Poland 12273 A 434 434
182 Poland 12274 G 434 434
183 Poland 12275 A 434 434
184 Poland 12276 T 434 434
185 Poland 12277 G 434 434
186 Poland 12278 G 434 434
187 Poland 12279 C 434 434
188 Poland 12280 T 434 434
189 Poland 12281 G 434 434
190 Poland 12282 A 434 434
191 Poland 12283 T 434 434
192 Poland 12284 C 434 434
193 Poland 12285 A 434 434
194 Poland 12286 A 434 434
195 Poland 12287 G 434 434
196 Poland 12288 C 434 434
197 Poland 12289 T 434 434
198 Poland 12290 A 434 434
199 Poland 12291 T 434 434
200 Poland 12292 G 434 434
201 Poland 12293 A 434 434
202 Poland 12294 C 434 434
203 Poland 12295 C 434 434
204 Poland 12296 C 434 434
205 Poland 12297 A 434 434
206 Poland 12298 A 434 434
207 Poland 12299 A 434 434
208 Poland 12300 T 434 434
209 Poland 12301 G 434 434
210 Poland 12302 T 434 434
211 Poland 12303 A 434 434
212 Poland 12304 T 434 434
213 Poland 12305 A 434 434
214 Poland 12306 A G 434 433 Lys4014Arg
215 Poland 12307 A 434 434
216 Poland 12308 C 434 434
217 Poland 12309 A 434 434
218 Poland 12310 G 434 434
219 Poland 12311 G 434 434
220 Poland 12312 C 434 434
221 Poland 12313 T C 434 432 Ala4016Ala
222 Poland 12314 A 434 434
223 Poland 12315 G 434 434
224 Poland 12316 A 434 434
225 Poland 12317 T 434 434
226 Poland 12318 C 434 434
227 Poland 12319 T 434 434
228 Poland 12320 G 434 434
229 Poland 12321 A 434 434
230 Poland 12322 G 434 434
231 Poland 12323 G 434 434
232 Poland 12324 A 434 434
233 Poland 12325 C 434 434
234 Poland 12326 A 434 434
235 Poland 12327 A 434 434
236 Poland 12328 G 434 434
237 Poland 12329 A 434 434
238 Poland 12330 G 434 434
239 Poland 12331 G 434 434
240 Poland 12332 G 434 434
241 Poland 12333 C 434 434
242 Poland 12334 A 434 434
243 Poland 12335 A 434 434
244 Poland 12336 A 434 434
245 Poland 12337 A 434 434
246 Poland 12338 G 434 434
247 Poland 12339 T 434 434
248 Poland 12340 T 434 434
249 Poland 12341 A 434 434
250 Poland 12342 C 434 434
251 Poland 12343 T 434 434
252 Poland 12344 A 434 434
253 Poland 12345 G 434 434
254 Poland 12346 T 434 434
255 Poland 12347 G 434 434
256 Poland 12348 C 434 434
257 Poland 12349 T 434 434
258 Poland 12350 A 434 434
259 Poland 12351 T 434 434
260 Poland 12352 G 434 434
261 Poland 12353 C 434 434
262 Poland 12354 A 434 434
263 Poland 12355 G 434 434
264 Poland 12356 A 434 434
265 Poland 12357 C 434 434
266 Poland 12358 A 434 434
267 Poland 12359 A 434 434
268 Poland 12360 T 434 434
269 Poland 12361 G 434 434
270 Poland 12362 C 434 434
271 Poland 12363 T 434 434
272 Poland 12364 T 434 434
273 Poland 12365 T 434 434
274 Poland 12366 T 434 434
275 Poland 12367 C 434 434
276 Poland 12368 A 434 434
277 Poland 12369 C 434 434
278 Poland 12370 T 434 434
279 Poland 12371 A 434 434
280 Poland 12372 T 434 434
281 Poland 12373 G 434 434
282 Poland 12374 C 434 434
283 Poland 12375 T 434 434
284 Poland 12376 T 434 434
285 Poland 12377 A 434 434
286 Poland 12378 G 434 434
287 Poland 12379 A 434 434
288 Poland 12380 A 434 434
289 Poland 12381 A 434 434
290 Poland 12382 G 434 434
291 Poland 12383 T 434 434
292 Poland 12384 T 434 434
293 Poland 12385 G 434 434
294 Poland 12386 G 434 434
295 Poland 12387 A 434 434
296 Poland 12388 T 434 434
297 Poland 12389 A 434 434
298 Poland 12390 A 434 434
299 Poland 12391 T 434 434
300 Poland 12392 G 434 434
301 Poland 12393 A 434 434
302 Poland 12394 T 434 434
303 Poland 12395 G 434 434
304 Poland 12396 C 434 434
305 Poland 12397 A 434 434
306 Poland 12398 C 434 434
307 Poland 12399 T 434 434
308 Poland 12400 C T 434 433 Leu4045Leu
309 Poland 12401 A 434 434
310 Poland 12402 A 434 434
311 Poland 12403 C 434 434
312 Poland 12404 A 434 434
313 Poland 12405 A 434 434
314 Poland 12406 C 434 434
315 Poland 12407 A 434 434
316 Poland 12408 T 434 434
317 Poland 12409 T 434 434
318 Poland 12410 A 434 434
319 Poland 12411 T 434 434
320 Poland 12412 C 434 434
321 Poland 12413 A 434 434
322 Poland 12414 A 434 434
323 Poland 12415 C 434 434
324 Poland 12416 A 434 434
325 Poland 12417 A 434 434
326 Poland 12418 T 434 434
327 Poland 12419 G 434 434
328 Poland 12420 C 434 434
329 Poland 12421 A 434 434
330 Poland 12422 A 434 434
331 Poland 12423 G 434 434
332 Poland 12424 A 434 434
333 Poland 12425 G 434 434
334 Poland 12426 A 434 434
335 Poland 12427 T 434 434
336 Poland 12428 G 434 434
337 Poland 12429 G 434 434
338 Poland 12430 T 434 434
339 Poland 12431 T 434 434
340 Poland 12432 G 434 434
341 Poland 12433 T 434 434
342 Poland 12434 G 434 434
343 Poland 12435 T 434 434
344 Poland 12436 T 434 434
345 Poland 12437 C 434 434
346 Poland 12438 C 434 434
347 Poland 12439 C T 434 433 Pro4058Pro
348 Poland 12440 T 434 434
349 Poland 12441 T 434 434
350 Poland 12442 G 434 434
351 Poland 12443 A 434 434
352 Poland 12444 A 434 434
353 Poland 12445 C 434 434
354 Poland 12446 A 434 434
355 Poland 12447 T 434 434
356 Poland 12448 A 434 434
357 Poland 12449 A 434 434
358 Poland 12450 T 434 434
359 Poland 12451 A 434 434
360 Poland 12452 C 434 434
361 Poland 12453 C 434 434
362 Poland 12454 T 434 434
363 Poland 12455 C 434 434
364 Poland 12456 T 434 434
365 Poland 12457 T 434 434
366 Poland 12458 A 434 434
367 Poland 12459 C T 434 433 Thr4065Ile
368 Poland 12460 A 434 434
369 Poland 12461 A 434 434
370 Poland 12462 C 434 434
371 Poland 12463 A 434 434
372 Poland 12464 G 434 434
373 Poland 12465 C 434 434
374 Poland 12466 A 434 434
375 Poland 12467 G 434 434
376 Poland 12468 C 434 434
377 Poland 12469 C 434 434
378 Poland 12470 A 434 434
379 Poland 12471 A 434 434
380 Poland 12472 A 434 434
381 Poland 12473 C T 434 433 Leu4070Leu
382 Poland 12474 T 434 434
383 Poland 12475 A 434 434
384 Poland 12476 A 434 434
385 Poland 12477 T 434 434
386 Poland 12478 G 434 434
387 Poland 12479 G 434 434
388 Poland 12480 T 434 434
389 Poland 12481 T 434 434
390 Poland 12482 G 434 434
391 Poland 12483 T 434 434
392 Poland 12484 C 434 434
393 Poland 12485 A 434 434
394 Poland 12486 T 434 434
395 Poland 12487 A 434 434
396 Poland 12488 C 434 434
397 Poland 12489 C 434 434
398 Poland 12490 A 434 434
399 Poland 12491 G 434 434
400 Poland 12492 A 434 434
401 Poland 12493 C 434 434
402 Poland 12494 T 434 434
403 Poland 12495 A 434 434
404 Poland 12496 T 434 434
405 Poland 12497 A 434 434
406 Poland 12498 A 434 434
407 Poland 12499 C 434 434
408 Poland 12500 A 434 434
409 Poland 12501 C 434 434
410 Poland 12502 A 434 434
411 Poland 12503 T 434 434
412 Poland 12504 A 434 434
413 Poland 12505 T 434 434
414 Poland 12506 A 434 434
415 Poland 12507 A 434 434
416 Poland 12508 A 434 434
417 Poland 12509 A 434 434
418 Poland 12510 A 434 434
419 Poland 12511 T 434 434
420 Poland 12512 A 434 434
421 Poland 12513 C T 434 433 Thr4083Met
422 Poland 12514 G 434 434
423 Poland 12515 T 434 434
424 Poland 12516 G 434 434
425 Poland 12517 T 434 434
426 Poland 12518 G 434 434
427 Poland 12519 A 434 434
428 Poland 12520 T 434 434
429 Poland 12521 G 434 434
430 Poland 12522 G 434 434
431 Poland 12523 T 434 434
432 Poland 12524 A 434 434
433 Poland 12525 C T 434 421 Thr4087Ile
434 Poland 12526 A 434 434
435 Poland 12527 A 434 434
436 Poland 12528 C 434 434
437 Poland 12529 A 434 434
438 Poland 12530 T 434 434
439 Poland 12531 T 434 434
440 Poland 12532 T 434 434
441 Poland 12533 A 434 434
442 Poland 12534 C T 434 433 Thr4090Ile
443 Poland 12535 T 434 434
444 Poland 12536 T 434 434
445 Poland 12537 A 434 434
446 Poland 12538 T 434 434
447 Poland 12539 G 434 434
448 Poland 12540 C 434 434
449 Poland 12541 A 434 434
450 Poland 12542 T 434 434
451 Poland 12543 C 434 434
452 Poland 12544 A 434 434
453 Poland 12545 G 434 434
454 Poland 12546 C 434 434
455 Poland 12547 A 434 434
456 Poland 12548 T 434 434
457 Poland 12549 T 434 434
458 Poland 12550 G 434 434
459 Poland 12551 T 434 434
460 Poland 12552 G 434 434
461 Poland 12553 G 434 434
462 Poland 12554 G 434 434
463 Poland 12555 A 434 434
464 Poland 12556 A 434 434
465 Poland 12557 A 434 434
466 Poland 12558 T 434 434
467 Poland 12559 C 434 434
468 Poland 12560 C 434 434
469 Poland 12561 A 434 434
470 Poland 12562 A 434 434
471 Poland 12563 C 434 434
472 Poland 12564 A 434 434
473 Poland 12565 G 434 434
474 Poland 12566 G 434 434
475 Poland 12567 T 434 434
476 Poland 12568 T 434 434
477 Poland 12569 G 434 434
478 Poland 12570 T 434 434
479 Poland 12571 A 434 434
480 Poland 12572 G 434 434
481 Poland 12573 A 434 434
482 Poland 12574 T 434 434
483 Poland 12575 G 434 434
484 Poland 12576 C 434 434
485 Poland 12577 A 434 434
486 Poland 12578 G 434 434
487 Poland 12579 A 434 434
488 Poland 12580 T 434 434
489 Poland 12581 A 434 434
490 Poland 12582 G 434 434
491 Poland 12583 T 434 434
492 Poland 12584 A 434 434
493 Poland 12585 A 434 434
494 Poland 12586 A 434 434
495 Poland 12587 A 434 434
496 Poland 12588 T 434 434
497 Poland 12589 T 434 434
498 Poland 12590 G 434 434
499 Poland 12591 T 434 434
500 Poland 12592 T 434 434
501 Poland 12593 C 434 434
502 Poland 12594 A 434 434
503 Poland 12595 A 434 434
504 Poland 12596 C 434 434
505 Poland 12597 T 434 434
506 Poland 12598 T 434 434
507 Poland 12599 A 434 434
508 Poland 12600 G 434 434
509 Poland 12601 T 434 434
510 Poland 12602 G 434 434
511 Poland 12603 A 434 434
512 Poland 12604 A 434 434
513 Poland 12605 A 434 434
514 Poland 12606 T 434 434
515 Poland 12607 T 434 434
516 Poland 12608 A 434 434
517 Poland 12609 G 434 434
518 Poland 12610 T 434 434
519 Poland 12611 A 434 434
520 Poland 12612 T 434 434
521 Poland 12613 G 434 434
522 Poland 12614 G 434 434
523 Poland 12615 A 434 434
524 Poland 12616 C 434 434
525 Poland 12617 A 434 434
526 Poland 12618 A 434 434
527 Poland 12619 T 434 434
528 Poland 12620 T 434 434
529 Poland 12621 C T 434 433 Ser4119Leu
530 Poland 12622 A 434 434
531 Poland 12623 C 434 434
532 Poland 12624 C 434 434
533 Poland 12625 T 434 434
534 Poland 12626 A 434 434
535 Poland 12627 A 434 434
536 Poland 12628 T 434 434
537 Poland 12629 T 434 434
538 Poland 12630 T 434 434
539 Poland 12631 A 434 434
540 Poland 12632 G 434 434
541 Poland 12633 C 434 434
542 Poland 12634 A 434 434
543 Poland 12635 T 434 434
544 Poland 12636 G 434 434
545 Poland 12637 G 434 434
546 Poland 12638 C 434 434
547 Poland 12639 C 434 434
548 Poland 12640 T 434 434
549 Poland 12641 C 434 434
550 Poland 12642 T 434 434
551 Poland 12643 T 434 434
552 Poland 12644 A 434 434
553 Poland 12645 T 434 434
554 Poland 12646 T 434 434
555 Poland 12647 G 434 434
556 Poland 12648 T 434 434
557 Poland 12649 A 434 434
558 Poland 12650 A 434 434
559 Poland 12651 C T 434 433 Thr4129Ile
560 Poland 12652 A 434 434
561 Poland 12653 G 434 434
562 Poland 12654 C 434 434
563 Poland 12655 T 434 434
564 Poland 12656 T 434 434
565 Poland 12657 T 434 434
566 Poland 12658 A 434 434
567 Poland 12659 A 434 434
568 Poland 12660 G 434 434
569 Poland 12661 G 434 434
570 Poland 12662 G 434 434
571 Poland 12663 C 434 434
572 Poland 12664 C T 434 422 Ala4133Ala
573 Poland 12665 A 434 434
574 Poland 12666 A 434 434
575 Poland 12667 T 434 434
576 Poland 12668 T 434 434
577 Poland 12669 C 434 434
578 Poland 12670 T 434 434
579 Poland 12671 G 434 434
580 Poland 12672 C T 434 433 Ala4136Val
581 Poland 12673 T 434 434
582 Poland 12674 G A 434 433 Val4137Ile
583 Poland 12675 T 434 434
584 Poland 12676 C 434 434
585 Poland 12677 A 434 434
586 Poland 12678 A 434 434
587 Poland 12679 A 434 434
588 Poland 12680 T 434 434
589 Poland 12681 T 434 434
590 Poland 12682 A 434 434
591 Poland 12683 C 434 434
592 Poland 12684 A 434 434
593 Poland 12685 G 434 434