National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84 3                           1   2    
C   6                                      
D   39           1                          
E   27                                      
F   15                                      
G   9                                      
I   30             1                        
K   45                                      
L   54         2       3                    
M   27                                      
N   39                                      
P   18                             1        
Q   33                                      
R   21   1                                  
S   45                             1        
T   39 1           2     1           1      
V   39         1                       1    
W   6                                      
Y   18                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Peru 12092 G 528 528
1 Peru 12093 C 528 528
2 Peru 12094 T 528 528
3 Peru 12095 A 528 528
4 Peru 12096 T 528 528
5 Peru 12097 A 528 528
6 Peru 12098 G 528 528
7 Peru 12099 C 528 528
8 Peru 12100 C 528 528
9 Peru 12101 T 528 528
10 Peru 12102 C 528 528
11 Peru 12103 A 528 528
12 Peru 12104 G 528 528
13 Peru 12105 A 528 528
14 Peru 12106 G 528 528
15 Peru 12107 T 528 528
16 Peru 12108 T 528 528
17 Peru 12109 T 528 528
18 Peru 12110 A 528 528
19 Peru 12111 G 528 528
20 Peru 12112 T 528 528
21 Peru 12113 T 528 528
22 Peru 12114 C 528 528
23 Peru 12115 C T 528 527 Ser3950Ser
24 Peru 12116 C T 528 525 Leu3951Phe
25 Peru 12117 T 528 528
26 Peru 12118 T 528 528
27 Peru 12119 C 528 528
28 Peru 12120 C 528 528
29 Peru 12121 A 528 528
30 Peru 12122 T 528 528
31 Peru 12123 C 528 528
32 Peru 12124 A 528 528
33 Peru 12125 T 528 528
34 Peru 12126 A 528 528
35 Peru 12127 T 528 528
36 Peru 12128 G 528 528
37 Peru 12129 C 528 528
38 Peru 12130 A 528 528
39 Peru 12131 G 528 528
40 Peru 12132 C 528 528
41 Peru 12133 T 528 528
42 Peru 12134 T 528 528
43 Peru 12135 T 528 528
44 Peru 12136 T 528 528
45 Peru 12137 G 528 528
46 Peru 12138 C 528 528
47 Peru 12139 T 528 528
48 Peru 12140 A 528 528
49 Peru 12141 C 528 528
50 Peru 12142 T 528 528
51 Peru 12143 G 528 528
52 Peru 12144 C 528 528
53 Peru 12145 T 528 528
54 Peru 12146 C 528 528
55 Peru 12147 A 528 528
56 Peru 12148 A 528 528
57 Peru 12149 G 528 528
58 Peru 12150 A 528 528
59 Peru 12151 A 528 528
60 Peru 12152 G T 528 527 Ala3963Ser
61 Peru 12153 C T 528 527 Ala3963Val
62 Peru 12154 T 528 528
63 Peru 12155 T 528 528
64 Peru 12156 A 528 528
65 Peru 12157 T 528 528
66 Peru 12158 G 528 528
67 Peru 12159 A 528 528
68 Peru 12160 G 528 528
69 Peru 12161 C 528 528
70 Peru 12162 A 528 528
71 Peru 12163 G 528 528
72 Peru 12164 G 528 528
73 Peru 12165 C 528 528
74 Peru 12166 T 528 528
75 Peru 12167 G 528 528
76 Peru 12168 T 528 528
77 Peru 12169 T 528 528
78 Peru 12170 G 528 528
79 Peru 12171 C 528 528
80 Peru 12172 T 528 528
81 Peru 12173 A 528 528
82 Peru 12174 A 528 528
83 Peru 12175 T 528 528
84 Peru 12176 G 528 528
85 Peru 12177 G 528 528
86 Peru 12178 T 528 528
87 Peru 12179 G 528 528
88 Peru 12180 A G 528 527 Asp3972Gly
89 Peru 12181 T 528 528
90 Peru 12182 T 528 528
91 Peru 12183 C 528 528
92 Peru 12184 T 528 528
93 Peru 12185 G 528 528
94 Peru 12186 A 528 528
95 Peru 12187 A 528 528
96 Peru 12188 G 528 528
97 Peru 12189 T 528 528
98 Peru 12190 T 528 528
99 Peru 12191 G T 528 527 Val3976Phe
100 Peru 12192 T 528 528
101 Peru 12193 T 528 528
102 Peru 12194 C 528 528
103 Peru 12195 T 528 528
104 Peru 12196 T 528 528
105 Peru 12197 A 528 528
106 Peru 12198 A 528 528
107 Peru 12199 A 528 528
108 Peru 12200 A 528 528
109 Peru 12201 A 528 528
110 Peru 12202 G 528 528
111 Peru 12203 T 528 528
112 Peru 12204 T 528 528
113 Peru 12205 G 528 528
114 Peru 12206 A 528 528
115 Peru 12207 A 528 528
116 Peru 12208 G 528 528
117 Peru 12209 A 528 528
118 Peru 12210 A 528 528
119 Peru 12211 G 528 528
120 Peru 12212 T 528 528
121 Peru 12213 C 528 528
122 Peru 12214 T 528 528
123 Peru 12215 T 528 528
124 Peru 12216 T 528 528
125 Peru 12217 G 528 528
126 Peru 12218 A 528 528
127 Peru 12219 A 528 528
128 Peru 12220 T 528 528
129 Peru 12221 G 528 528
130 Peru 12222 T 528 528
131 Peru 12223 G 528 528
132 Peru 12224 G 528 528
133 Peru 12225 C 528 528
134 Peru 12226 T 528 528
135 Peru 12227 A 528 528
136 Peru 12228 A 528 528
137 Peru 12229 A 528 528
138 Peru 12230 T 528 528
139 Peru 12231 C 528 528
140 Peru 12232 T 528 528
141 Peru 12233 G 528 528
142 Peru 12234 A 528 528
143 Peru 12235 A 528 528
144 Peru 12236 T 528 528
145 Peru 12237 T 528 528
146 Peru 12238 T 528 528
147 Peru 12239 G 528 528
148 Peru 12240 A 528 528
149 Peru 12241 C 528 528
150 Peru 12242 C T 528 526 Arg3993Cys
151 Peru 12243 G 528 528
152 Peru 12244 T 528 528
153 Peru 12245 G 528 528
154 Peru 12246 A 528 528
155 Peru 12247 T 528 528
156 Peru 12248 G 528 528
157 Peru 12249 C 528 528
158 Peru 12250 A 528 528
159 Peru 12251 G 528 528
160 Peru 12252 C 528 528
161 Peru 12253 C 528 528
162 Peru 12254 A 528 528
163 Peru 12255 T 528 528
164 Peru 12256 G 528 528
165 Peru 12257 C 528 528
166 Peru 12258 A 528 528
167 Peru 12259 A 528 528
168 Peru 12260 C 528 528
169 Peru 12261 G 528 528
170 Peru 12262 T 528 528
171 Peru 12263 A 528 528
172 Peru 12264 A 528 528
173 Peru 12265 G 528 528
174 Peru 12266 T 528 528
175 Peru 12267 T 528 528
176 Peru 12268 G 528 528
177 Peru 12269 G 528 528
178 Peru 12270 A 528 528
179 Peru 12271 A 528 528
180 Peru 12272 A 528 528
181 Peru 12273 A 528 528
182 Peru 12274 G 528 528
183 Peru 12275 A 528 528
184 Peru 12276 T 528 528
185 Peru 12277 G 528 528
186 Peru 12278 G 528 528
187 Peru 12279 C 528 528
188 Peru 12280 T 528 528
189 Peru 12281 G 528 528
190 Peru 12282 A 528 528
191 Peru 12283 T 528 528
192 Peru 12284 C 528 528
193 Peru 12285 A 528 528
194 Peru 12286 A 528 528
195 Peru 12287 G 528 528
196 Peru 12288 C 528 528
197 Peru 12289 T 528 528
198 Peru 12290 A 528 528
199 Peru 12291 T 528 528
200 Peru 12292 G 528 528
201 Peru 12293 A 528 528
202 Peru 12294 C 528 528
203 Peru 12295 C 528 527
204 Peru 12296 C 528 528
205 Peru 12297 A 528 528
206 Peru 12298 A 528 528
207 Peru 12299 A 528 528
208 Peru 12300 T 528 528
209 Peru 12301 G 528 528
210 Peru 12302 T 528 528
211 Peru 12303 A 528 528
212 Peru 12304 T C 528 527 Tyr4013Tyr
213 Peru 12305 A 528 528
214 Peru 12306 A 528 528
215 Peru 12307 A 528 528
216 Peru 12308 C 528 528
217 Peru 12309 A 528 528
218 Peru 12310 G 528 528
219 Peru 12311 G 528 528
220 Peru 12312 C 528 528
221 Peru 12313 T 528 528
222 Peru 12314 A 528 528
223 Peru 12315 G 528 528
224 Peru 12316 A 528 528
225 Peru 12317 T 528 528
226 Peru 12318 C 528 528
227 Peru 12319 T 528 528
228 Peru 12320 G 528 528
229 Peru 12321 A 528 528
230 Peru 12322 G 528 528
231 Peru 12323 G 528 528
232 Peru 12324 A 528 528
233 Peru 12325 C 528 528
234 Peru 12326 A 528 528
235 Peru 12327 A 528 528
236 Peru 12328 G 528 528
237 Peru 12329 A 528 528
238 Peru 12330 G 528 528
239 Peru 12331 G 528 528
240 Peru 12332 G 528 528
241 Peru 12333 C 528 528
242 Peru 12334 A 528 528
243 Peru 12335 A 528 528
244 Peru 12336 A 528 528
245 Peru 12337 A 528 528
246 Peru 12338 G 528 528
247 Peru 12339 T 528 528
248 Peru 12340 T 528 528
249 Peru 12341 A 528 528
250 Peru 12342 C 528 528
251 Peru 12343 T 528 528
252 Peru 12344 A 528 528
253 Peru 12345 G 528 528
254 Peru 12346 T 528 528
255 Peru 12347 G 528 528
256 Peru 12348 C 528 528
257 Peru 12349 T 528 528
258 Peru 12350 A 528 528
259 Peru 12351 T 528 528
260 Peru 12352 G 528 528
261 Peru 12353 C 528 528
262 Peru 12354 A 528 528
263 Peru 12355 G 528 528
264 Peru 12356 A 528 528
265 Peru 12357 C 528 528
266 Peru 12358 A 528 528
267 Peru 12359 A 528 528
268 Peru 12360 T 528 528
269 Peru 12361 G 528 528
270 Peru 12362 C 528 528
271 Peru 12363 T 528 528
272 Peru 12364 T A 528 525 Leu4033Leu
273 Peru 12365 T 528 528
274 Peru 12366 T 528 528
275 Peru 12367 C 528 528
276 Peru 12368 A 528 528
277 Peru 12369 C 528 528
278 Peru 12370 T 528 528
279 Peru 12371 A 528 528
280 Peru 12372 T 528 528
281 Peru 12373 G 528 528
282 Peru 12374 C 528 528
283 Peru 12375 T 528 528
284 Peru 12376 T 528 528
285 Peru 12377 A 528 528
286 Peru 12378 G 528 528
287 Peru 12379 A 528 528
288 Peru 12380 A 528 528
289 Peru 12381 A 528 528
290 Peru 12382 G 528 528
291 Peru 12383 T 528 528
292 Peru 12384 T 528 528
293 Peru 12385 G 528 528
294 Peru 12386 G 528 528
295 Peru 12387 A 528 528
296 Peru 12388 T 528 528
297 Peru 12389 A 528 528
298 Peru 12390 A 528 528
299 Peru 12391 T 528 528
300 Peru 12392 G 528 528
301 Peru 12393 A 528 528
302 Peru 12394 T 528 528
303 Peru 12395 G 528 528
304 Peru 12396 C 528 528
305 Peru 12397 A 528 528
306 Peru 12398 C 528 528
307 Peru 12399 T 528 528
308 Peru 12400 C T 528 525 Leu4045Leu
309 Peru 12401 A 528 528
310 Peru 12402 A 528 528
311 Peru 12403 C 528 528
312 Peru 12404 A 528 528
313 Peru 12405 A 528 528
314 Peru 12406 C 528 528
315 Peru 12407 A 528 528
316 Peru 12408 T 528 528
317 Peru 12409 T 528 528
318 Peru 12410 A 528 528
319 Peru 12411 T 528 528
320 Peru 12412 C 528 528
321 Peru 12413 A 528 528
322 Peru 12414 A 528 528
323 Peru 12415 C 528 528
324 Peru 12416 A 528 528
325 Peru 12417 A 528 528
326 Peru 12418 T 528 528
327 Peru 12419 G 528 528
328 Peru 12420 C 528 528
329 Peru 12421 A 528 528
330 Peru 12422 A 528 528
331 Peru 12423 G 528 528
332 Peru 12424 A 528 528
333 Peru 12425 G 528 528
334 Peru 12426 A 528 528
335 Peru 12427 T 528 528
336 Peru 12428 G 528 528
337 Peru 12429 G 528 528
338 Peru 12430 T 528 528
339 Peru 12431 T 528 528
340 Peru 12432 G 528 528
341 Peru 12433 T 528 528
342 Peru 12434 G 528 528
343 Peru 12435 T 528 528
344 Peru 12436 T 528 528
345 Peru 12437 C 528 528
346 Peru 12438 C 528 528
347 Peru 12439 C 528 528
348 Peru 12440 T 528 528
349 Peru 12441 T 528 528
350 Peru 12442 G 528 528
351 Peru 12443 A 528 528
352 Peru 12444 A 528 528
353 Peru 12445 C 528 528
354 Peru 12446 A 528 528
355 Peru 12447 T 528 528
356 Peru 12448 A T 528 525 Ile4061Ile
357 Peru 12449 A 528 528
358 Peru 12450 T 528 528
359 Peru 12451 A 528 528
360 Peru 12452 C 528 528
361 Peru 12453 C 528 528
362 Peru 12454 T 528 528
363 Peru 12455 C T 528 527 Leu4064Phe
364 Peru 12456 T 528 528
365 Peru 12457 T C 528 527 Leu4064Leu
366 Peru 12458 A 528 528
367 Peru 12459 C 528 528
368 Peru 12460 A 528 528
369 Peru 12461 A 528 528
370 Peru 12462 C 528 528
371 Peru 12463 A 528 528
372 Peru 12464 G 528 528
373 Peru 12465 C 528 528
374 Peru 12466 A 528 528
375 Peru 12467 G 528 528
376 Peru 12468 C 528 528
377 Peru 12469 C 528 528
378 Peru 12470 A 528 528
379 Peru 12471 A 528 528
380 Peru 12472 A 528 528
381 Peru 12473 C 528 528
382 Peru 12474 T 528 528
383 Peru 12475 A 528 528
384 Peru 12476 A 528 528
385 Peru 12477 T 528 528
386 Peru 12478 G 528 528
387 Peru 12479 G 528 528
388 Peru 12480 T 528 528
389 Peru 12481 T 528 526
390 Peru 12482 G 528 528
391 Peru 12483 T 528 528
392 Peru 12484 C T 528 525 Val4073Val
393 Peru 12485 A 528 528
394 Peru 12486 T 528 528
395 Peru 12487 A 528 528
396 Peru 12488 C T 528 527 Pro4075Ser
397 Peru 12489 C 528 528
398 Peru 12490 A 528 528
399 Peru 12491 G 528 528
400 Peru 12492 A 528 528
401 Peru 12493 C 528 528
402 Peru 12494 T 528 528
403 Peru 12495 A 528 528
404 Peru 12496 T 528 528
405 Peru 12497 A 528 528
406 Peru 12498 A 528 528
407 Peru 12499 C 528 528
408 Peru 12500 A 528 528
409 Peru 12501 C 528 528
410 Peru 12502 A 528 528
411 Peru 12503 T 528 528
412 Peru 12504 A 528 528
413 Peru 12505 T 528 528
414 Peru 12506 A 528 528
415 Peru 12507 A 528 528
416 Peru 12508 A 528 528
417 Peru 12509 A 528 528
418 Peru 12510 A 528 528
419 Peru 12511 T 528 528
420 Peru 12512 A 528 528
421 Peru 12513 C T 528 526 Thr4083Met
422 Peru 12514 G T 528 527 Thr4083Thr
423 Peru 12515 T 528 528
424 Peru 12516 G 528 528
425 Peru 12517 T 528 528
426 Peru 12518 G 528 528
427 Peru 12519 A 528 528
428 Peru 12520 T 528 528
429 Peru 12521 G 528 528
430 Peru 12522 G 528 528
431 Peru 12523 T 528 528
432 Peru 12524 A G 528 527 Thr4087Ala
433 Peru 12525 C 528 528
434 Peru 12526 A 528 528
435 Peru 12527 A 528 528
436 Peru 12528 C 528 528
437 Peru 12529 A 528 528
438 Peru 12530 T 528 528
439 Peru 12531 T 528 528
440 Peru 12532 T 528 528
441 Peru 12533 A 528 528
442 Peru 12534 C T 528 526 Thr4090Ile
443 Peru 12535 T 528 528
444 Peru 12536 T 528 528
445 Peru 12537 A 528 528
446 Peru 12538 T 528 528
447 Peru 12539 G 528 528
448 Peru 12540 C 528 528
449 Peru 12541 A 528 528
450 Peru 12542 T 528 528
451 Peru 12543 C 528 528
452 Peru 12544 A 528 528
453 Peru 12545 G 528 528
454 Peru 12546 C 528 528
455 Peru 12547 A 528 528
456 Peru 12548 T 528 528
457 Peru 12549 T 528 528
458 Peru 12550 G 528 528
459 Peru 12551 T 528 528
460 Peru 12552 G 528 528
461 Peru 12553 G 528 528
462 Peru 12554 G 528 528
463 Peru 12555 A 528 528
464 Peru 12556 A 528 528
465 Peru 12557 A 528 528
466 Peru 12558 T 528 528
467 Peru 12559 C 528 528
468 Peru 12560 C 528 528
469 Peru 12561 A 528 528
470 Peru 12562 A 528 528
471 Peru 12563 C 528 528
472 Peru 12564 A 528 528
473 Peru 12565 G 528 528
474 Peru 12566 G 528 528
475 Peru 12567 T 528 528
476 Peru 12568 T 528 528
477 Peru 12569 G 528 528
478 Peru 12570 T 528 528
479 Peru 12571 A 528 528
480 Peru 12572 G 528 528
481 Peru 12573 A 528 528
482 Peru 12574 T 528 528
483 Peru 12575 G 528 528
484 Peru 12576 C 528 528
485 Peru 12577 A T 528 527 Ala4104Ala
486 Peru 12578 G 528 528
487 Peru 12579 A 528 528
488 Peru 12580 T 528 528
489 Peru 12581 A 528 528
490 Peru 12582 G 528 528
491 Peru 12583 T 528 528
492 Peru 12584 A 528 528
493 Peru 12585 A 528 528
494 Peru 12586 A 528 528
495 Peru 12587 A 528 528
496 Peru 12588 T 528 528
497 Peru 12589 T 528 528
498 Peru 12590 G 528 528
499 Peru 12591 T 528 528
500 Peru 12592 T 528 528
501 Peru 12593 C 528 528
502 Peru 12594 A 528 528
503 Peru 12595 A 528 528
504 Peru 12596 C 528 528
505 Peru 12597 T 528 528
506 Peru 12598 T 528 528
507 Peru 12599 A 528 528
508 Peru 12600 G 528 528
509 Peru 12601 T 528 528
510 Peru 12602 G 528 527
511 Peru 12603 A 528 528
512 Peru 12604 A 528 528
513 Peru 12605 A 528 528
514 Peru 12606 T 528 528
515 Peru 12607 T 528 528
516 Peru 12608 A 528 528
517 Peru 12609 G 528 528
518 Peru 12610 T 528 528
519 Peru 12611 A 528 528
520 Peru 12612 T 528 528
521 Peru 12613 G 528 528
522 Peru 12614 G 528 528
523 Peru 12615 A 528 528
524 Peru 12616 C 528 528
525 Peru 12617 A 528 528
526 Peru 12618 A 528 528
527 Peru 12619 T 528 528
528 Peru 12620 T 528 528
529 Peru 12621 C 528 528
530 Peru 12622 A 528 528
531 Peru 12623 C 528 528
532 Peru 12624 C 528 528
533 Peru 12625 T 528 528
534 Peru 12626 A 528 528
535 Peru 12627 A 528 528
536 Peru 12628 T 528 528
537 Peru 12629 T 528 528
538 Peru 12630 T 528 528
539 Peru 12631 A 528 528
540 Peru 12632 G 528 528
541 Peru 12633 C 528 528
542 Peru 12634 A T 528 525 Ala4123Ala
543 Peru 12635 T 528 528
544 Peru 12636 G 528 528
545 Peru 12637 G 528 528
546 Peru 12638 C 528 528
547 Peru 12639 C 528 528
548 Peru 12640 T 528 528
549 Peru 12641 C 528 528
550 Peru 12642 T 528 528
551 Peru 12643 T 528 528
552 Peru 12644 A 528 528
553 Peru 12645 T 528 528
554 Peru 12646 T 528 528
555 Peru 12647 G 528 528
556 Peru 12648 T 528 528
557 Peru 12649 A 528 528
558 Peru 12650 A 528 528
559 Peru 12651 C T 528 526 Thr4129Ile
560 Peru 12652 A 528 528
561 Peru 12653 G 528 528
562 Peru 12654 C 528 528
563 Peru 12655 T 528 528
564 Peru 12656 T 528 528
565 Peru 12657 T 528 528
566 Peru 12658 A 528 528
567 Peru 12659 A 528 528
568 Peru 12660 G 528 528
569 Peru 12661 G 528 528
570 Peru 12662 G 528 528
571 Peru 12663 C 528 528
572 Peru 12664 C T 528 527 Ala4133Ala
573 Peru 12665 A 528 528
574 Peru 12666 A 528 528
575 Peru 12667 T 528 528
576 Peru 12668 T 528 528
577 Peru 12669 C 528 528
578 Peru 12670 T 528 528
579 Peru 12671 G 528 528
580 Peru 12672 C T 528 527 Ala4136Val
581 Peru 12673 T 528 528
582 Peru 12674 G 528 528
583 Peru 12675 T 528 528
584 Peru 12676 C 528 528
585 Peru 12677 A 528 528
586 Peru 12678 A 528 528
587 Peru 12679 A 528 528
588 Peru 12680 T 528 528
589 Peru 12681 T 528 528
590 Peru 12682 A 528 528
591 Peru 12683 C 528 528
592 Peru 12684 A 528 528
593 Peru 12685 G 528 528