National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84                                 1    
C   6                                      
D   39                                      
E   27                                      
F   15                                      
G   9                                      
I   30                                      
K   45                                      
L   54                                      
M   27                                      
N   39                                      
P   18                                      
Q   33                                      
R   21                                      
S   45                                      
T   39                                      
V   39                                      
W   6                                      
Y   18                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Nepal 12092 G 15 15
1 Nepal 12093 C 15 15
2 Nepal 12094 T 15 15
3 Nepal 12095 A 15 15
4 Nepal 12096 T 15 15
5 Nepal 12097 A 15 15
6 Nepal 12098 G 15 15
7 Nepal 12099 C 15 15
8 Nepal 12100 C 15 15
9 Nepal 12101 T 15 15
10 Nepal 12102 C 15 15
11 Nepal 12103 A 15 15
12 Nepal 12104 G 15 15
13 Nepal 12105 A 15 15
14 Nepal 12106 G 15 15
15 Nepal 12107 T 15 15
16 Nepal 12108 T 15 15
17 Nepal 12109 T 15 15
18 Nepal 12110 A 15 15
19 Nepal 12111 G 15 15
20 Nepal 12112 T 15 15
21 Nepal 12113 T 15 15
22 Nepal 12114 C 15 15
23 Nepal 12115 C 15 15
24 Nepal 12116 C 15 15
25 Nepal 12117 T 15 15
26 Nepal 12118 T 15 15
27 Nepal 12119 C 15 15
28 Nepal 12120 C 15 15
29 Nepal 12121 A 15 15
30 Nepal 12122 T 15 15
31 Nepal 12123 C 15 15
32 Nepal 12124 A 15 15
33 Nepal 12125 T 15 15
34 Nepal 12126 A 15 15
35 Nepal 12127 T 15 15
36 Nepal 12128 G 15 15
37 Nepal 12129 C 15 15
38 Nepal 12130 A 15 15
39 Nepal 12131 G 15 15
40 Nepal 12132 C 15 15
41 Nepal 12133 T 15 15
42 Nepal 12134 T 15 15
43 Nepal 12135 T 15 15
44 Nepal 12136 T 15 15
45 Nepal 12137 G 15 15
46 Nepal 12138 C 15 15
47 Nepal 12139 T 15 15
48 Nepal 12140 A 15 15
49 Nepal 12141 C 15 15
50 Nepal 12142 T 15 15
51 Nepal 12143 G 15 15
52 Nepal 12144 C 15 15
53 Nepal 12145 T 15 15
54 Nepal 12146 C 15 15
55 Nepal 12147 A 15 15
56 Nepal 12148 A 15 15
57 Nepal 12149 G 15 15
58 Nepal 12150 A 15 15
59 Nepal 12151 A 15 15
60 Nepal 12152 G 15 15
61 Nepal 12153 C 15 15
62 Nepal 12154 T 15 15
63 Nepal 12155 T 15 15
64 Nepal 12156 A 15 15
65 Nepal 12157 T 15 15
66 Nepal 12158 G 15 15
67 Nepal 12159 A 15 15
68 Nepal 12160 G 15 15
69 Nepal 12161 C 15 15
70 Nepal 12162 A 15 15
71 Nepal 12163 G 15 15
72 Nepal 12164 G 15 15
73 Nepal 12165 C 15 15
74 Nepal 12166 T 15 15
75 Nepal 12167 G 15 15
76 Nepal 12168 T 15 15
77 Nepal 12169 T 15 15
78 Nepal 12170 G 15 15
79 Nepal 12171 C 15 15
80 Nepal 12172 T 15 15
81 Nepal 12173 A 15 15
82 Nepal 12174 A 15 15
83 Nepal 12175 T 15 15
84 Nepal 12176 G 15 15
85 Nepal 12177 G 15 15
86 Nepal 12178 T 15 15
87 Nepal 12179 G 15 15
88 Nepal 12180 A 15 15
89 Nepal 12181 T 15 15
90 Nepal 12182 T 15 15
91 Nepal 12183 C 15 15
92 Nepal 12184 T 15 15
93 Nepal 12185 G 15 15
94 Nepal 12186 A 15 15
95 Nepal 12187 A 15 15
96 Nepal 12188 G 15 15
97 Nepal 12189 T 15 15
98 Nepal 12190 T 15 15
99 Nepal 12191 G 15 15
100 Nepal 12192 T 15 15
101 Nepal 12193 T 15 15
102 Nepal 12194 C 15 15
103 Nepal 12195 T 15 15
104 Nepal 12196 T 15 15
105 Nepal 12197 A 15 15
106 Nepal 12198 A 15 15
107 Nepal 12199 A 15 15
108 Nepal 12200 A 15 15
109 Nepal 12201 A 15 15
110 Nepal 12202 G 15 15
111 Nepal 12203 T 15 15
112 Nepal 12204 T 15 15
113 Nepal 12205 G 15 15
114 Nepal 12206 A 15 15
115 Nepal 12207 A 15 15
116 Nepal 12208 G 15 15
117 Nepal 12209 A 15 15
118 Nepal 12210 A 15 15
119 Nepal 12211 G 15 15
120 Nepal 12212 T 15 15
121 Nepal 12213 C 15 15
122 Nepal 12214 T 15 15
123 Nepal 12215 T 15 15
124 Nepal 12216 T 15 15
125 Nepal 12217 G 15 15
126 Nepal 12218 A 15 15
127 Nepal 12219 A 15 15
128 Nepal 12220 T 15 15
129 Nepal 12221 G 15 15
130 Nepal 12222 T 15 15
131 Nepal 12223 G 15 15
132 Nepal 12224 G 15 15
133 Nepal 12225 C 15 15
134 Nepal 12226 T 15 15
135 Nepal 12227 A 15 15
136 Nepal 12228 A 15 15
137 Nepal 12229 A 15 15
138 Nepal 12230 T 15 15
139 Nepal 12231 C 15 15
140 Nepal 12232 T 15 15
141 Nepal 12233 G 15 15
142 Nepal 12234 A 15 15
143 Nepal 12235 A 15 15
144 Nepal 12236 T 15 15
145 Nepal 12237 T 15 15
146 Nepal 12238 T 15 15
147 Nepal 12239 G 15 15
148 Nepal 12240 A 15 15
149 Nepal 12241 C 15 15
150 Nepal 12242 C 15 15
151 Nepal 12243 G 15 15
152 Nepal 12244 T 15 15
153 Nepal 12245 G 15 15
154 Nepal 12246 A 15 15
155 Nepal 12247 T 15 15
156 Nepal 12248 G 15 15
157 Nepal 12249 C 15 15
158 Nepal 12250 A 15 15
159 Nepal 12251 G 15 15
160 Nepal 12252 C 15 15
161 Nepal 12253 C 15 15
162 Nepal 12254 A 15 15
163 Nepal 12255 T 15 15
164 Nepal 12256 G 15 15
165 Nepal 12257 C 15 15
166 Nepal 12258 A 15 15
167 Nepal 12259 A 15 15
168 Nepal 12260 C 15 15
169 Nepal 12261 G 15 15
170 Nepal 12262 T 15 15
171 Nepal 12263 A 15 15
172 Nepal 12264 A 15 15
173 Nepal 12265 G 15 15
174 Nepal 12266 T 15 15
175 Nepal 12267 T 15 15
176 Nepal 12268 G 15 15
177 Nepal 12269 G 15 15
178 Nepal 12270 A 15 15
179 Nepal 12271 A 15 15
180 Nepal 12272 A 15 15
181 Nepal 12273 A 15 15
182 Nepal 12274 G 15 15
183 Nepal 12275 A 15 15
184 Nepal 12276 T 15 15
185 Nepal 12277 G 15 15
186 Nepal 12278 G 15 15
187 Nepal 12279 C 15 15
188 Nepal 12280 T 15 15
189 Nepal 12281 G 15 15
190 Nepal 12282 A 15 15
191 Nepal 12283 T 15 15
192 Nepal 12284 C 15 15
193 Nepal 12285 A 15 15
194 Nepal 12286 A 15 15
195 Nepal 12287 G 15 15
196 Nepal 12288 C 15 15
197 Nepal 12289 T 15 15
198 Nepal 12290 A 15 15
199 Nepal 12291 T 15 15
200 Nepal 12292 G 15 15
201 Nepal 12293 A 15 15
202 Nepal 12294 C 15 15
203 Nepal 12295 C 15 15
204 Nepal 12296 C 15 15
205 Nepal 12297 A 15 15
206 Nepal 12298 A 15 15
207 Nepal 12299 A 15 15
208 Nepal 12300 T 15 15
209 Nepal 12301 G 15 15
210 Nepal 12302 T 15 15
211 Nepal 12303 A 15 15
212 Nepal 12304 T 15 15
213 Nepal 12305 A 15 15
214 Nepal 12306 A 15 15
215 Nepal 12307 A 15 15
216 Nepal 12308 C 15 15
217 Nepal 12309 A 15 15
218 Nepal 12310 G 15 15
219 Nepal 12311 G 15 15
220 Nepal 12312 C 15 15
221 Nepal 12313 T 15 15
222 Nepal 12314 A 15 15
223 Nepal 12315 G 15 15
224 Nepal 12316 A 15 15
225 Nepal 12317 T 15 15
226 Nepal 12318 C 15 15
227 Nepal 12319 T 15 15
228 Nepal 12320 G 15 15
229 Nepal 12321 A 15 15
230 Nepal 12322 G 15 15
231 Nepal 12323 G 15 15
232 Nepal 12324 A 15 15
233 Nepal 12325 C 15 15
234 Nepal 12326 A 15 15
235 Nepal 12327 A 15 15
236 Nepal 12328 G 15 15
237 Nepal 12329 A 15 15
238 Nepal 12330 G 15 15
239 Nepal 12331 G 15 15
240 Nepal 12332 G 15 15
241 Nepal 12333 C 15 15
242 Nepal 12334 A 15 15
243 Nepal 12335 A 15 15
244 Nepal 12336 A 15 15
245 Nepal 12337 A 15 15
246 Nepal 12338 G 15 15
247 Nepal 12339 T 15 15
248 Nepal 12340 T 15 15
249 Nepal 12341 A 15 15
250 Nepal 12342 C 15 15
251 Nepal 12343 T 15 15
252 Nepal 12344 A 15 15
253 Nepal 12345 G 15 15
254 Nepal 12346 T 15 15
255 Nepal 12347 G 15 15
256 Nepal 12348 C 15 15
257 Nepal 12349 T 15 15
258 Nepal 12350 A 15 15
259 Nepal 12351 T 15 15
260 Nepal 12352 G 15 15
261 Nepal 12353 C 15 15
262 Nepal 12354 A 15 15
263 Nepal 12355 G 15 15
264 Nepal 12356 A 15 15
265 Nepal 12357 C 15 15
266 Nepal 12358 A 15 15
267 Nepal 12359 A 15 15
268 Nepal 12360 T 15 15
269 Nepal 12361 G 15 15
270 Nepal 12362 C 15 15
271 Nepal 12363 T 15 15
272 Nepal 12364 T 15 15
273 Nepal 12365 T 15 15
274 Nepal 12366 T 15 15
275 Nepal 12367 C 15 15
276 Nepal 12368 A 15 15
277 Nepal 12369 C 15 15
278 Nepal 12370 T 15 15
279 Nepal 12371 A 15 15
280 Nepal 12372 T 15 15
281 Nepal 12373 G 15 15
282 Nepal 12374 C 15 15
283 Nepal 12375 T 15 15
284 Nepal 12376 T 15 15
285 Nepal 12377 A 15 15
286 Nepal 12378 G 15 15
287 Nepal 12379 A 15 15
288 Nepal 12380 A 15 15
289 Nepal 12381 A 15 15
290 Nepal 12382 G 15 15
291 Nepal 12383 T 15 15
292 Nepal 12384 T 15 15
293 Nepal 12385 G 15 15
294 Nepal 12386 G 15 15
295 Nepal 12387 A 15 15
296 Nepal 12388 T 15 15
297 Nepal 12389 A 15 15
298 Nepal 12390 A 15 15
299 Nepal 12391 T 15 15
300 Nepal 12392 G 15 15
301 Nepal 12393 A 15 15
302 Nepal 12394 T 15 15
303 Nepal 12395 G 15 15
304 Nepal 12396 C 15 15
305 Nepal 12397 A 15 15
306 Nepal 12398 C 15 15
307 Nepal 12399 T 15 15
308 Nepal 12400 C 15 15
309 Nepal 12401 A 15 15
310 Nepal 12402 A 15 15
311 Nepal 12403 C 15 15
312 Nepal 12404 A 15 15
313 Nepal 12405 A 15 15
314 Nepal 12406 C 15 15
315 Nepal 12407 A 15 15
316 Nepal 12408 T 15 15
317 Nepal 12409 T 15 15
318 Nepal 12410 A 15 15
319 Nepal 12411 T 15 15
320 Nepal 12412 C 15 15
321 Nepal 12413 A 15 15
322 Nepal 12414 A 15 15
323 Nepal 12415 C 15 15
324 Nepal 12416 A 15 15
325 Nepal 12417 A 15 15
326 Nepal 12418 T 15 15
327 Nepal 12419 G 15 15
328 Nepal 12420 C 15 15
329 Nepal 12421 A 15 15
330 Nepal 12422 A 15 15
331 Nepal 12423 G 15 15
332 Nepal 12424 A 15 15
333 Nepal 12425 G 15 15
334 Nepal 12426 A 15 15
335 Nepal 12427 T 15 15
336 Nepal 12428 G 15 15
337 Nepal 12429 G 15 15
338 Nepal 12430 T 15 15
339 Nepal 12431 T 15 15
340 Nepal 12432 G 15 15
341 Nepal 12433 T 15 15
342 Nepal 12434 G 15 15
343 Nepal 12435 T 15 15
344 Nepal 12436 T 15 15
345 Nepal 12437 C 15 15
346 Nepal 12438 C 15 15
347 Nepal 12439 C 15 15
348 Nepal 12440 T 15 15
349 Nepal 12441 T 15 15
350 Nepal 12442 G 15 15
351 Nepal 12443 A 15 15
352 Nepal 12444 A 15 15
353 Nepal 12445 C 15 15
354 Nepal 12446 A 15 15
355 Nepal 12447 T 15 15
356 Nepal 12448 A 15 15
357 Nepal 12449 A 15 15
358 Nepal 12450 T 15 15
359 Nepal 12451 A 15 15
360 Nepal 12452 C 15 15
361 Nepal 12453 C 15 15
362 Nepal 12454 T 15 15
363 Nepal 12455 C 15 15
364 Nepal 12456 T 15 15
365 Nepal 12457 T 15 15
366 Nepal 12458 A 15 15
367 Nepal 12459 C 15 15
368 Nepal 12460 A 15 15
369 Nepal 12461 A 15 15
370 Nepal 12462 C 15 15
371 Nepal 12463 A 15 15
372 Nepal 12464 G 15 15
373 Nepal 12465 C 15 15
374 Nepal 12466 A 15 15
375 Nepal 12467 G 15 15
376 Nepal 12468 C 15 15
377 Nepal 12469 C 15 15
378 Nepal 12470 A 15 15
379 Nepal 12471 A 15 15
380 Nepal 12472 A 15 15
381 Nepal 12473 C 15 15
382 Nepal 12474 T 15 15
383 Nepal 12475 A 15 15
384 Nepal 12476 A 15 15
385 Nepal 12477 T 15 15
386 Nepal 12478 G 15 15
387 Nepal 12479 G 15 15
388 Nepal 12480 T 15 15
389 Nepal 12481 T 15 15
390 Nepal 12482 G 15 15
391 Nepal 12483 T 15 15
392 Nepal 12484 C 15 15
393 Nepal 12485 A 15 15
394 Nepal 12486 T 15 15
395 Nepal 12487 A 15 15
396 Nepal 12488 C 15 15
397 Nepal 12489 C 15 15
398 Nepal 12490 A 15 15
399 Nepal 12491 G 15 15
400 Nepal 12492 A 15 15
401 Nepal 12493 C 15 15
402 Nepal 12494 T 15 15
403 Nepal 12495 A 15 15
404 Nepal 12496 T 15 15
405 Nepal 12497 A 15 15
406 Nepal 12498 A 15 15
407 Nepal 12499 C 15 15
408 Nepal 12500 A 15 15
409 Nepal 12501 C 15 15
410 Nepal 12502 A 15 15
411 Nepal 12503 T 15 15
412 Nepal 12504 A 15 15
413 Nepal 12505 T 15 15
414 Nepal 12506 A 15 15
415 Nepal 12507 A 15 15
416 Nepal 12508 A 15 15
417 Nepal 12509 A 15 15
418 Nepal 12510 A 15 15
419 Nepal 12511 T 15 15
420 Nepal 12512 A 15 15
421 Nepal 12513 C 15 15
422 Nepal 12514 G 15 15
423 Nepal 12515 T 15 15
424 Nepal 12516 G 15 15
425 Nepal 12517 T 15 15
426 Nepal 12518 G 15 15
427 Nepal 12519 A 15 15
428 Nepal 12520 T 15 15
429 Nepal 12521 G 15 15
430 Nepal 12522 G 15 15
431 Nepal 12523 T 15 15
432 Nepal 12524 A 15 15
433 Nepal 12525 C 15 15
434 Nepal 12526 A 15 15
435 Nepal 12527 A 15 15
436 Nepal 12528 C 15 15
437 Nepal 12529 A 15 15
438 Nepal 12530 T 15 15
439 Nepal 12531 T 15 15
440 Nepal 12532 T 15 15
441 Nepal 12533 A 15 15
442 Nepal 12534 C 15 15
443 Nepal 12535 T 15 15
444 Nepal 12536 T 15 15
445 Nepal 12537 A 15 15
446 Nepal 12538 T 15 15
447 Nepal 12539 G 15 15
448 Nepal 12540 C 15 15
449 Nepal 12541 A 15 15
450 Nepal 12542 T 15 15
451 Nepal 12543 C 15 15
452 Nepal 12544 A 15 15
453 Nepal 12545 G 15 15
454 Nepal 12546 C 15 15
455 Nepal 12547 A 15 15
456 Nepal 12548 T 15 15
457 Nepal 12549 T 15 15
458 Nepal 12550 G 15 15
459 Nepal 12551 T 15 15
460 Nepal 12552 G 15 15
461 Nepal 12553 G 15 15
462 Nepal 12554 G 15 15
463 Nepal 12555 A 15 15
464 Nepal 12556 A 15 15
465 Nepal 12557 A 15 15
466 Nepal 12558 T 15 15
467 Nepal 12559 C 15 15
468 Nepal 12560 C 15 15
469 Nepal 12561 A 15 15
470 Nepal 12562 A 15 15
471 Nepal 12563 C 15 15
472 Nepal 12564 A 15 15
473 Nepal 12565 G 15 15
474 Nepal 12566 G 15 15
475 Nepal 12567 T 15 15
476 Nepal 12568 T 15 15
477 Nepal 12569 G 15 15
478 Nepal 12570 T 15 15
479 Nepal 12571 A 15 15
480 Nepal 12572 G 15 15
481 Nepal 12573 A 15 15
482 Nepal 12574 T 15 15
483 Nepal 12575 G 15 15
484 Nepal 12576 C 15 15
485 Nepal 12577 A 15 15
486 Nepal 12578 G 15 15
487 Nepal 12579 A 15 15
488 Nepal 12580 T 15 15
489 Nepal 12581 A 15 15
490 Nepal 12582 G 15 15
491 Nepal 12583 T 15 15
492 Nepal 12584 A 15 15
493 Nepal 12585 A 15 15
494 Nepal 12586 A 15 15
495 Nepal 12587 A 15 15
496 Nepal 12588 T 15 15
497 Nepal 12589 T 15 15
498 Nepal 12590 G 15 15
499 Nepal 12591 T 15 15
500 Nepal 12592 T 15 15
501 Nepal 12593 C 15 15
502 Nepal 12594 A 15 15
503 Nepal 12595 A 15 15
504 Nepal 12596 C 15 15
505 Nepal 12597 T 15 15
506 Nepal 12598 T 15 15
507 Nepal 12599 A 15 15
508 Nepal 12600 G 15 15
509 Nepal 12601 T 15 15
510 Nepal 12602 G 15 15
511 Nepal 12603 A 15 15
512 Nepal 12604 A 15 15
513 Nepal 12605 A 15 15
514 Nepal 12606 T 15 15
515 Nepal 12607 T 15 15
516 Nepal 12608 A 15 15
517 Nepal 12609 G 15 15
518 Nepal 12610 T 15 15
519 Nepal 12611 A 15 15
520 Nepal 12612 T 15 15
521 Nepal 12613 G 15 15
522 Nepal 12614 G 15 15
523 Nepal 12615 A 15 15
524 Nepal 12616 C 15 15
525 Nepal 12617 A 15 15
526 Nepal 12618 A 15 15
527 Nepal 12619 T 15 15
528 Nepal 12620 T 15 15
529 Nepal 12621 C 15 15
530 Nepal 12622 A 15 15
531 Nepal 12623 C 15 15
532 Nepal 12624 C 15 15
533 Nepal 12625 T 15 15
534 Nepal 12626 A 15 15
535 Nepal 12627 A 15 15
536 Nepal 12628 T 15 15
537 Nepal 12629 T 15 15
538 Nepal 12630 T 15 15
539 Nepal 12631 A 15 15
540 Nepal 12632 G 15 15
541 Nepal 12633 C 15 15
542 Nepal 12634 A 15 15
543 Nepal 12635 T 15 15
544 Nepal 12636 G 15 15
545 Nepal 12637 G 15 15
546 Nepal 12638 C 15 15
547 Nepal 12639 C 15 15
548 Nepal 12640 T 15 15
549 Nepal 12641 C 15 15
550 Nepal 12642 T 15 15
551 Nepal 12643 T 15 15
552 Nepal 12644 A 15 15
553 Nepal 12645 T 15 15
554 Nepal 12646 T 15 15
555 Nepal 12647 G 15 15
556 Nepal 12648 T 15 15
557 Nepal 12649 A 15 15
558 Nepal 12650 A 15 15
559 Nepal 12651 C 15 15
560 Nepal 12652 A 15 15
561 Nepal 12653 G 15 15
562 Nepal 12654 C 15 15
563 Nepal 12655 T 15 15
564 Nepal 12656 T 15 15
565 Nepal 12657 T 15 15
566 Nepal 12658 A 15 15
567 Nepal 12659 A 15 15
568 Nepal 12660 G 15 15
569 Nepal 12661 G 15 15
570 Nepal 12662 G 15 15
571 Nepal 12663 C 15 15
572 Nepal 12664 C 15 15
573 Nepal 12665 A 15 15
574 Nepal 12666 A 15 15
575 Nepal 12667 T 15 15
576 Nepal 12668 T 15 15
577 Nepal 12669 C 15 15
578 Nepal 12670 T 15 15
579 Nepal 12671 G 15 15
580 Nepal 12672 C T 15 13 Ala4136Val
581 Nepal 12673 T 15 15
582 Nepal 12674 G 15 15
583 Nepal 12675 T 15 15
584 Nepal 12676 C 15 15
585 Nepal 12677 A 15 15
586 Nepal 12678 A 15 15
587 Nepal 12679 A 15 15
588 Nepal 12680 T 15 15
589 Nepal 12681 T 15 15
590 Nepal 12682 A 15 15
591 Nepal 12683 C 15 15
592 Nepal 12684 A 15 15
593 Nepal 12685 G 15 15