National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84 2                                    
C   6                                      
D   39     1                                
E   27                                      
F   15                                      
G   9                                      
I   30             1                        
K   45                                      
L   54         1                            
M   27                                      
N   39                                      
P   18                                      
Q   33                                      
R   21                                      
S   45                             1        
T   39             1                        
V   39                                      
W   6                                      
Y   18                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Morocco 12092 G 119 119
1 Morocco 12093 C 119 119
2 Morocco 12094 T 119 119
3 Morocco 12095 A 119 119
4 Morocco 12096 T 119 119
5 Morocco 12097 A 119 119
6 Morocco 12098 G 119 119
7 Morocco 12099 C 119 119
8 Morocco 12100 C T 119 118 Ala3945Ala
9 Morocco 12101 T 119 119
10 Morocco 12102 C 119 119
11 Morocco 12103 A 119 119
12 Morocco 12104 G 119 119
13 Morocco 12105 A 119 119
14 Morocco 12106 G 119 119
15 Morocco 12107 T 119 119
16 Morocco 12108 T 119 119
17 Morocco 12109 T 119 119
18 Morocco 12110 A 119 119
19 Morocco 12111 G 120 120
20 Morocco 12112 T 120 120
21 Morocco 12113 T 120 120
22 Morocco 12114 C 120 120
23 Morocco 12115 C T 120 118 Ser3950Ser
24 Morocco 12116 C T 120 119 Leu3951Phe
25 Morocco 12117 T 120 120
26 Morocco 12118 T 120 120
27 Morocco 12119 C 120 120
28 Morocco 12120 C 120 120
29 Morocco 12121 A 120 120
30 Morocco 12122 T 120 120
31 Morocco 12123 C 120 120
32 Morocco 12124 A 120 120
33 Morocco 12125 T 120 120
34 Morocco 12126 A 120 120
35 Morocco 12127 T 120 120
36 Morocco 12128 G 120 120
37 Morocco 12129 C 120 120
38 Morocco 12130 A C 120 119 Ala3955Ala
39 Morocco 12131 G 120 120
40 Morocco 12132 C 120 120
41 Morocco 12133 T 120 120
42 Morocco 12134 T 120 120
43 Morocco 12135 T 120 120
44 Morocco 12136 T 120 120
45 Morocco 12137 G 120 120
46 Morocco 12138 C 120 120
47 Morocco 12139 T 120 120
48 Morocco 12140 A 120 120
49 Morocco 12141 C 120 120
50 Morocco 12142 T 120 120
51 Morocco 12143 G 120 120
52 Morocco 12144 C 120 120
53 Morocco 12145 T 120 120
54 Morocco 12146 C 120 120
55 Morocco 12147 A 120 120
56 Morocco 12148 A 120 120
57 Morocco 12149 G 120 120
58 Morocco 12150 A 120 120
59 Morocco 12151 A 120 120
60 Morocco 12152 G 120 120
61 Morocco 12153 C 120 120
62 Morocco 12154 T 120 120
63 Morocco 12155 T 120 120
64 Morocco 12156 A 120 120
65 Morocco 12157 T 120 120
66 Morocco 12158 G 120 120
67 Morocco 12159 A 120 120
68 Morocco 12160 G 120 120
69 Morocco 12161 C 120 120
70 Morocco 12162 A 120 120
71 Morocco 12163 G 120 120
72 Morocco 12164 G 120 120
73 Morocco 12165 C 120 120
74 Morocco 12166 T 120 120
75 Morocco 12167 G 120 120
76 Morocco 12168 T 120 120
77 Morocco 12169 T 120 120
78 Morocco 12170 G 120 120
79 Morocco 12171 C 120 120
80 Morocco 12172 T 120 120
81 Morocco 12173 A 120 120
82 Morocco 12174 A 120 120
83 Morocco 12175 T 120 120
84 Morocco 12176 G 120 120
85 Morocco 12177 G 120 120
86 Morocco 12178 T 120 120
87 Morocco 12179 G 120 120
88 Morocco 12180 A 120 120
89 Morocco 12181 T 120 120
90 Morocco 12182 T 120 120
91 Morocco 12183 C 120 120
92 Morocco 12184 T 120 120
93 Morocco 12185 G 120 120
94 Morocco 12186 A 120 120
95 Morocco 12187 A 120 120
96 Morocco 12188 G 120 120
97 Morocco 12189 T 120 120
98 Morocco 12190 T 120 120
99 Morocco 12191 G 120 120
100 Morocco 12192 T 120 120
101 Morocco 12193 T 120 120
102 Morocco 12194 C 120 120
103 Morocco 12195 T 120 120
104 Morocco 12196 T 120 120
105 Morocco 12197 A 120 120
106 Morocco 12198 A 120 120
107 Morocco 12199 A 120 120
108 Morocco 12200 A 120 120
109 Morocco 12201 A 120 120
110 Morocco 12202 G 120 120
111 Morocco 12203 T 120 120
112 Morocco 12204 T 120 120
113 Morocco 12205 G 120 120
114 Morocco 12206 A 120 120
115 Morocco 12207 A 120 120
116 Morocco 12208 G 120 120
117 Morocco 12209 A 120 120
118 Morocco 12210 A 120 120
119 Morocco 12211 G 120 120
120 Morocco 12212 T 120 120
121 Morocco 12213 C 120 120
122 Morocco 12214 T 120 120
123 Morocco 12215 T 120 120
124 Morocco 12216 T 120 120
125 Morocco 12217 G 120 120
126 Morocco 12218 A 120 120
127 Morocco 12219 A 120 120
128 Morocco 12220 T 120 120
129 Morocco 12221 G 120 120
130 Morocco 12222 T 120 120
131 Morocco 12223 G 120 120
132 Morocco 12224 G 120 120
133 Morocco 12225 C 120 120
134 Morocco 12226 T 120 120
135 Morocco 12227 A 120 120
136 Morocco 12228 A 120 120
137 Morocco 12229 A 120 120
138 Morocco 12230 T 120 120
139 Morocco 12231 C 120 120
140 Morocco 12232 T 120 120
141 Morocco 12233 G 120 120
142 Morocco 12234 A 120 120
143 Morocco 12235 A 120 120
144 Morocco 12236 T 120 120
145 Morocco 12237 T 120 120
146 Morocco 12238 T 120 120
147 Morocco 12239 G 120 120
148 Morocco 12240 A 120 120
149 Morocco 12241 C T 120 115 Asp3992Asp
150 Morocco 12242 C 120 120
151 Morocco 12243 G 120 120
152 Morocco 12244 T 120 120
153 Morocco 12245 G 120 120
154 Morocco 12246 A 120 120
155 Morocco 12247 T 120 120
156 Morocco 12248 G 120 120
157 Morocco 12249 C 120 120
158 Morocco 12250 A 120 120
159 Morocco 12251 G 120 120
160 Morocco 12252 C 120 120
161 Morocco 12253 C 120 120
162 Morocco 12254 A 120 120
163 Morocco 12255 T 120 120
164 Morocco 12256 G 119 119
165 Morocco 12257 C 119 119
166 Morocco 12258 A 119 119
167 Morocco 12259 A 119 119
168 Morocco 12260 C 119 119
169 Morocco 12261 G 119 119
170 Morocco 12262 T 119 119
171 Morocco 12263 A 119 119
172 Morocco 12264 A 119 119
173 Morocco 12265 G 119 119
174 Morocco 12266 T 119 119
175 Morocco 12267 T 119 119
176 Morocco 12268 G 119 119
177 Morocco 12269 G 119 119
178 Morocco 12270 A 119 119
179 Morocco 12271 A 119 119
180 Morocco 12272 A 119 119
181 Morocco 12273 A 119 119
182 Morocco 12274 G 119 119
183 Morocco 12275 A 119 119
184 Morocco 12276 T 119 119
185 Morocco 12277 G 119 119
186 Morocco 12278 G 119 119
187 Morocco 12279 C 119 119
188 Morocco 12280 T 119 119
189 Morocco 12281 G 119 119
190 Morocco 12282 A 119 119
191 Morocco 12283 T 119 119
192 Morocco 12284 C 119 119
193 Morocco 12285 A 119 119
194 Morocco 12286 A 119 119
195 Morocco 12287 G 119 119
196 Morocco 12288 C 119 119
197 Morocco 12289 T 119 119
198 Morocco 12290 A 119 119
199 Morocco 12291 T 119 119
200 Morocco 12292 G 119 119
201 Morocco 12293 A 119 119
202 Morocco 12294 C 119 119
203 Morocco 12295 C 119 119
204 Morocco 12296 C 119 119
205 Morocco 12297 A 119 119
206 Morocco 12298 A 119 119
207 Morocco 12299 A 119 119
208 Morocco 12300 T 119 119
209 Morocco 12301 G 119 119
210 Morocco 12302 T 119 119
211 Morocco 12303 A 119 119
212 Morocco 12304 T 119 119
213 Morocco 12305 A 119 119
214 Morocco 12306 A 119 119
215 Morocco 12307 A 119 119
216 Morocco 12308 C 119 119
217 Morocco 12309 A 119 119
218 Morocco 12310 G 119 119
219 Morocco 12311 G 119 119
220 Morocco 12312 C 119 119
221 Morocco 12313 T 119 119
222 Morocco 12314 A 119 119
223 Morocco 12315 G 119 119
224 Morocco 12316 A 119 119
225 Morocco 12317 T 119 119
226 Morocco 12318 C 119 119
227 Morocco 12319 T 119 119
228 Morocco 12320 G 119 119
229 Morocco 12321 A 119 119
230 Morocco 12322 G 119 119
231 Morocco 12323 G 119 119
232 Morocco 12324 A 119 119
233 Morocco 12325 C 119 119
234 Morocco 12326 A 119 119
235 Morocco 12327 A 119 119
236 Morocco 12328 G 119 119
237 Morocco 12329 A 119 119
238 Morocco 12330 G 119 119
239 Morocco 12331 G 119 119
240 Morocco 12332 G 119 119
241 Morocco 12333 C 119 119
242 Morocco 12334 A 119 119
243 Morocco 12335 A 119 119
244 Morocco 12336 A 120 120
245 Morocco 12337 A 120 120
246 Morocco 12338 G 120 120
247 Morocco 12339 T 120 120
248 Morocco 12340 T 120 120
249 Morocco 12341 A 120 120
250 Morocco 12342 C 120 120
251 Morocco 12343 T 120 120
252 Morocco 12344 A 120 120
253 Morocco 12345 G 120 120
254 Morocco 12346 T 120 120
255 Morocco 12347 G 120 120
256 Morocco 12348 C 120 120
257 Morocco 12349 T 120 120
258 Morocco 12350 A 120 120
259 Morocco 12351 T 120 120
260 Morocco 12352 G 120 120
261 Morocco 12353 C 120 120
262 Morocco 12354 A 120 120
263 Morocco 12355 G 120 120
264 Morocco 12356 A 120 120
265 Morocco 12357 C 120 120
266 Morocco 12358 A 120 120
267 Morocco 12359 A 120 120
268 Morocco 12360 T 120 120
269 Morocco 12361 G 120 120
270 Morocco 12362 C 120 120
271 Morocco 12363 T 120 120
272 Morocco 12364 T 120 120
273 Morocco 12365 T 120 120
274 Morocco 12366 T 120 120
275 Morocco 12367 C 120 120
276 Morocco 12368 A 120 120
277 Morocco 12369 C 120 120
278 Morocco 12370 T 120 120
279 Morocco 12371 A 120 120
280 Morocco 12372 T 120 120
281 Morocco 12373 G 120 120
282 Morocco 12374 C 120 120
283 Morocco 12375 T 120 120
284 Morocco 12376 T 120 120
285 Morocco 12377 A 120 120
286 Morocco 12378 G 120 120
287 Morocco 12379 A 120 120
288 Morocco 12380 A 120 120
289 Morocco 12381 A 120 120
290 Morocco 12382 G 120 120
291 Morocco 12383 T 120 120
292 Morocco 12384 T 120 120
293 Morocco 12385 G 120 120
294 Morocco 12386 G 120 120
295 Morocco 12387 A 120 120
296 Morocco 12388 T 120 120
297 Morocco 12389 A 120 120
298 Morocco 12390 A 120 120
299 Morocco 12391 T 120 120
300 Morocco 12392 G 120 120
301 Morocco 12393 A 120 120
302 Morocco 12394 T 120 120
303 Morocco 12395 G 120 120
304 Morocco 12396 C 120 120
305 Morocco 12397 A 120 120
306 Morocco 12398 C 120 120
307 Morocco 12399 T 120 120
308 Morocco 12400 C 120 120
309 Morocco 12401 A 120 120
310 Morocco 12402 A 120 120
311 Morocco 12403 C 120 120
312 Morocco 12404 A 120 120
313 Morocco 12405 A 120 120
314 Morocco 12406 C 120 120
315 Morocco 12407 A 120 120
316 Morocco 12408 T 120 120
317 Morocco 12409 T 120 120
318 Morocco 12410 A 120 120
319 Morocco 12411 T 120 120
320 Morocco 12412 C T 120 105 Ile4049Ile
321 Morocco 12413 A 120 120
322 Morocco 12414 A 120 120
323 Morocco 12415 C 120 120
324 Morocco 12416 A 120 120
325 Morocco 12417 A 120 120
326 Morocco 12418 T 120 120
327 Morocco 12419 G 121 121
328 Morocco 12420 C 121 121
329 Morocco 12421 A 121 121
330 Morocco 12422 A 121 121
331 Morocco 12423 G 121 121
332 Morocco 12424 A 121 121
333 Morocco 12425 G 121 121
334 Morocco 12426 A 121 121
335 Morocco 12427 T 121 121
336 Morocco 12428 G 121 121
337 Morocco 12429 G 121 121
338 Morocco 12430 T 121 121
339 Morocco 12431 T 121 121
340 Morocco 12432 G 121 121
341 Morocco 12433 T 121 121
342 Morocco 12434 G 121 121
343 Morocco 12435 T 121 121
344 Morocco 12436 T 121 121
345 Morocco 12437 C 121 121
346 Morocco 12438 C 121 121
347 Morocco 12439 C 121 121
348 Morocco 12440 T 121 121
349 Morocco 12441 T 121 121
350 Morocco 12442 G 121 121
351 Morocco 12443 A 121 121
352 Morocco 12444 A 121 121
353 Morocco 12445 C 121 121
354 Morocco 12446 A 121 121
355 Morocco 12447 T 121 121
356 Morocco 12448 A 121 121
357 Morocco 12449 A 121 121
358 Morocco 12450 T 121 121
359 Morocco 12451 A 121 121
360 Morocco 12452 C 121 121
361 Morocco 12453 C 121 121
362 Morocco 12454 T 121 121
363 Morocco 12455 C 121 121
364 Morocco 12456 T 121 121
365 Morocco 12457 T 121 121
366 Morocco 12458 A 121 121
367 Morocco 12459 C 121 121
368 Morocco 12460 A 121 121
369 Morocco 12461 A 121 121
370 Morocco 12462 C 121 121
371 Morocco 12463 A 121 121
372 Morocco 12464 G 121 121
373 Morocco 12465 C 121 121
374 Morocco 12466 A 121 121
375 Morocco 12467 G 121 121
376 Morocco 12468 C 121 121
377 Morocco 12469 C 121 121
378 Morocco 12470 A 121 121
379 Morocco 12471 A 121 121
380 Morocco 12472 A 121 121
381 Morocco 12473 C 121 121
382 Morocco 12474 T 121 121
383 Morocco 12475 A 121 121
384 Morocco 12476 A 121 121
385 Morocco 12477 T 121 121
386 Morocco 12478 G 121 121
387 Morocco 12479 G 121 121
388 Morocco 12480 T 121 121
389 Morocco 12481 T 121 121
390 Morocco 12482 G 121 121
391 Morocco 12483 T 121 121
392 Morocco 12484 C 121 121
393 Morocco 12485 A 121 121
394 Morocco 12486 T 121 121
395 Morocco 12487 A 121 121
396 Morocco 12488 C 121 121
397 Morocco 12489 C 121 121
398 Morocco 12490 A 121 121
399 Morocco 12491 G 121 121
400 Morocco 12492 A 121 121
401 Morocco 12493 C 121 121
402 Morocco 12494 T 121 121
403 Morocco 12495 A 121 121
404 Morocco 12496 T 121 121
405 Morocco 12497 A 121 121
406 Morocco 12498 A 121 121
407 Morocco 12499 C 121 121
408 Morocco 12500 A 121 121
409 Morocco 12501 C 121 121
410 Morocco 12502 A 121 121
411 Morocco 12503 T 121 121
412 Morocco 12504 A 121 121
413 Morocco 12505 T 121 121
414 Morocco 12506 A 121 121
415 Morocco 12507 A 121 121
416 Morocco 12508 A 121 121
417 Morocco 12509 A 121 121
418 Morocco 12510 A 121 121
419 Morocco 12511 T 121 121
420 Morocco 12512 A 121 121
421 Morocco 12513 C 121 121
422 Morocco 12514 G 121 121
423 Morocco 12515 T 121 121
424 Morocco 12516 G 121 121
425 Morocco 12517 T 121 121
426 Morocco 12518 G 121 121
427 Morocco 12519 A 121 121
428 Morocco 12520 T 121 121
429 Morocco 12521 G 121 121
430 Morocco 12522 G 121 121
431 Morocco 12523 T 121 121
432 Morocco 12524 A 121 121
433 Morocco 12525 C T 121 120 Thr4087Ile
434 Morocco 12526 A 121 121
435 Morocco 12527 A 121 121
436 Morocco 12528 C 121 121
437 Morocco 12529 A 121 121
438 Morocco 12530 T 121 121
439 Morocco 12531 T 121 121
440 Morocco 12532 T 121 121
441 Morocco 12533 A 121 121
442 Morocco 12534 C 121 121
443 Morocco 12535 T 121 121
444 Morocco 12536 T 121 121
445 Morocco 12537 A 121 121
446 Morocco 12538 T 121 121
447 Morocco 12539 G 121 121
448 Morocco 12540 C 121 121
449 Morocco 12541 A 121 121
450 Morocco 12542 T 121 121
451 Morocco 12543 C 121 121
452 Morocco 12544 A 121 121
453 Morocco 12545 G 121 121
454 Morocco 12546 C 121 121
455 Morocco 12547 A 121 121
456 Morocco 12548 T 121 121
457 Morocco 12549 T 121 121
458 Morocco 12550 G 121 121
459 Morocco 12551 T 121 121
460 Morocco 12552 G 121 121
461 Morocco 12553 G 121 121
462 Morocco 12554 G 121 121
463 Morocco 12555 A 121 121
464 Morocco 12556 A 121 121
465 Morocco 12557 A 121 121
466 Morocco 12558 T 121 121
467 Morocco 12559 C 121 121
468 Morocco 12560 C 121 121
469 Morocco 12561 A 121 121
470 Morocco 12562 A 121 121
471 Morocco 12563 C 121 121
472 Morocco 12564 A 121 121
473 Morocco 12565 G 121 121
474 Morocco 12566 G 121 121
475 Morocco 12567 T 121 121
476 Morocco 12568 T 121 121
477 Morocco 12569 G 121 121
478 Morocco 12570 T 121 121
479 Morocco 12571 A 121 121
480 Morocco 12572 G 121 121
481 Morocco 12573 A 121 121
482 Morocco 12574 T 121 121
483 Morocco 12575 G 121 121
484 Morocco 12576 C 121 121
485 Morocco 12577 A 121 121
486 Morocco 12578 G 121 121
487 Morocco 12579 A 121 121
488 Morocco 12580 T 121 121
489 Morocco 12581 A 121 121
490 Morocco 12582 G 121 121
491 Morocco 12583 T 121 121
492 Morocco 12584 A 121 121
493 Morocco 12585 A 121 121
494 Morocco 12586 A 121 121
495 Morocco 12587 A 121 121
496 Morocco 12588 T 121 121
497 Morocco 12589 T 121 121
498 Morocco 12590 G 121 121
499 Morocco 12591 T 121 121
500 Morocco 12592 T 121 121
501 Morocco 12593 C 121 121
502 Morocco 12594 A 121 121
503 Morocco 12595 A 121 121
504 Morocco 12596 C 121 121
505 Morocco 12597 T 121 121
506 Morocco 12598 T 121 121
507 Morocco 12599 A 121 121
508 Morocco 12600 G 121 121
509 Morocco 12601 T 121 121
510 Morocco 12602 G 121 121
511 Morocco 12603 A 121 121
512 Morocco 12604 A 121 121
513 Morocco 12605 A 121 121
514 Morocco 12606 T 121 121
515 Morocco 12607 T 121 121
516 Morocco 12608 A 121 121
517 Morocco 12609 G 121 121
518 Morocco 12610 T 121 121
519 Morocco 12611 A 121 121
520 Morocco 12612 T 121 121
521 Morocco 12613 G 121 121
522 Morocco 12614 G 121 121
523 Morocco 12615 A 121 121
524 Morocco 12616 C 121 121
525 Morocco 12617 A 121 121
526 Morocco 12618 A 121 121
527 Morocco 12619 T 121 121
528 Morocco 12620 T 121 121
529 Morocco 12621 C 121 121
530 Morocco 12622 A 121 121
531 Morocco 12623 C 121 121
532 Morocco 12624 C 121 121
533 Morocco 12625 T 121 121
534 Morocco 12626 A 121 121
535 Morocco 12627 A 121 121
536 Morocco 12628 T 121 121
537 Morocco 12629 T 121 121
538 Morocco 12630 T 121 121
539 Morocco 12631 A 121 121
540 Morocco 12632 G 121 121
541 Morocco 12633 C 121 121
542 Morocco 12634 A 121 121
543 Morocco 12635 T 121 121
544 Morocco 12636 G 121 121
545 Morocco 12637 G 121 121
546 Morocco 12638 C 121 121
547 Morocco 12639 C 121 121
548 Morocco 12640 T 121 121
549 Morocco 12641 C 121 121
550 Morocco 12642 T 121 121
551 Morocco 12643 T 121 121
552 Morocco 12644 A 121 121
553 Morocco 12645 T 121 121
554 Morocco 12646 T 121 121
555 Morocco 12647 G 121 121
556 Morocco 12648 T 121 121
557 Morocco 12649 A 121 121
558 Morocco 12650 A 121 121
559 Morocco 12651 C 121 121
560 Morocco 12652 A 121 121
561 Morocco 12653 G 121 121
562 Morocco 12654 C 121 121
563 Morocco 12655 T 121 121
564 Morocco 12656 T 121 121
565 Morocco 12657 T 121 121
566 Morocco 12658 A 121 121
567 Morocco 12659 A 121 121
568 Morocco 12660 G 121 121
569 Morocco 12661 G 121 121
570 Morocco 12662 G 121 121
571 Morocco 12663 C 121 121
572 Morocco 12664 C 121 121
573 Morocco 12665 A 121 121
574 Morocco 12666 A 121 121
575 Morocco 12667 T 121 121
576 Morocco 12668 T 121 121
577 Morocco 12669 C 121 121
578 Morocco 12670 T 121 121
579 Morocco 12671 G 121 121
580 Morocco 12672 C 121 121
581 Morocco 12673 T 121 121
582 Morocco 12674 G 121 121
583 Morocco 12675 T 121 121
584 Morocco 12676 C 121 121
585 Morocco 12677 A 121 121
586 Morocco 12678 A 121 121
587 Morocco 12679 A 121 121
588 Morocco 12680 T 121 121
589 Morocco 12681 T 121 121
590 Morocco 12682 A 121 121
591 Morocco 12683 C 121 121
592 Morocco 12684 A 121 121
593 Morocco 12685 G 121 121