National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   594                                        
?                                            
A   84                                        
C   6                                        
D   39       1                                
E   27                                        
F   15                                        
G   9                                        
H                                            
I   30                                   1    
K   45                                        
L   54                                        
M   27                                        
N   39                                        
P   18                                        
Q   33                                        
R   21             1                          
S   45                                        
T   39                                        
V   39                                        
W   6                                        
Y   18                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Iran 12092 G 36 36
1 Iran 12093 C 36 36
2 Iran 12094 T 36 36
3 Iran 12095 A 36 36
4 Iran 12096 T 36 36
5 Iran 12097 A 36 36
6 Iran 12098 G 36 36
7 Iran 12099 C 36 36
8 Iran 12100 C 36 36
9 Iran 12101 T 36 36
10 Iran 12102 C 36 36
11 Iran 12103 A 36 36
12 Iran 12104 G 36 36
13 Iran 12105 A 36 36
14 Iran 12106 G 36 36
15 Iran 12107 T 36 36
16 Iran 12108 T 36 36
17 Iran 12109 T 36 36
18 Iran 12110 A 36 36
19 Iran 12111 G 36 36
20 Iran 12112 T 36 36
21 Iran 12113 T 36 36
22 Iran 12114 C 36 36
23 Iran 12115 C 36 36
24 Iran 12116 C 36 36
25 Iran 12117 T 36 36
26 Iran 12118 T 36 36
27 Iran 12119 C 36 36
28 Iran 12120 C 36 36
29 Iran 12121 A 36 36
30 Iran 12122 T 36 36
31 Iran 12123 C 36 36
32 Iran 12124 A 36 36
33 Iran 12125 T 36 36
34 Iran 12126 A 36 36
35 Iran 12127 T 36 36
36 Iran 12128 G 36 36
37 Iran 12129 C 36 36
38 Iran 12130 A 36 36
39 Iran 12131 G 36 36
40 Iran 12132 C 36 36
41 Iran 12133 T 36 36
42 Iran 12134 T 36 36
43 Iran 12135 T 36 36
44 Iran 12136 T 36 36
45 Iran 12137 G 36 36
46 Iran 12138 C 36 36
47 Iran 12139 T 36 36
48 Iran 12140 A 36 36
49 Iran 12141 C 36 36
50 Iran 12142 T 36 36
51 Iran 12143 G 36 36
52 Iran 12144 C 36 36
53 Iran 12145 T 36 36
54 Iran 12146 C 36 36
55 Iran 12147 A 36 36
56 Iran 12148 A 36 36
57 Iran 12149 G 36 36
58 Iran 12150 A 36 36
59 Iran 12151 A 36 36
60 Iran 12152 G 36 36
61 Iran 12153 C 36 36
62 Iran 12154 T 36 36
63 Iran 12155 T 36 36
64 Iran 12156 A 36 36
65 Iran 12157 T 36 36
66 Iran 12158 G 36 36
67 Iran 12159 A 36 36
68 Iran 12160 G 36 36
69 Iran 12161 C 36 36
70 Iran 12162 A 36 36
71 Iran 12163 G 36 36
72 Iran 12164 G 36 36
73 Iran 12165 C 36 36
74 Iran 12166 T 36 36
75 Iran 12167 G 36 36
76 Iran 12168 T 36 36
77 Iran 12169 T 36 36
78 Iran 12170 G 36 36
79 Iran 12171 C 36 36
80 Iran 12172 T 36 36
81 Iran 12173 A 36 36
82 Iran 12174 A 36 36
83 Iran 12175 T 36 36
84 Iran 12176 G 36 36
85 Iran 12177 G 36 36
86 Iran 12178 T 36 36
87 Iran 12179 G 36 36
88 Iran 12180 A 36 36
89 Iran 12181 T 36 36
90 Iran 12182 T 36 36
91 Iran 12183 C 36 36
92 Iran 12184 T 36 36
93 Iran 12185 G 36 36
94 Iran 12186 A 36 36
95 Iran 12187 A 36 36
96 Iran 12188 G 36 36
97 Iran 12189 T 36 36
98 Iran 12190 T 36 36
99 Iran 12191 G 36 36
100 Iran 12192 T 36 36
101 Iran 12193 T 36 36
102 Iran 12194 C 36 36
103 Iran 12195 T 36 36
104 Iran 12196 T 36 36
105 Iran 12197 A 36 36
106 Iran 12198 A 36 36
107 Iran 12199 A 36 36
108 Iran 12200 A 36 36
109 Iran 12201 A 36 36
110 Iran 12202 G 36 36
111 Iran 12203 T 36 36
112 Iran 12204 T 36 36
113 Iran 12205 G 36 36
114 Iran 12206 A 36 36
115 Iran 12207 A 36 36
116 Iran 12208 G 36 36
117 Iran 12209 A 36 36
118 Iran 12210 A 36 36
119 Iran 12211 G 36 36
120 Iran 12212 T 36 36
121 Iran 12213 C 36 36
122 Iran 12214 T 36 36
123 Iran 12215 T 36 36
124 Iran 12216 T 36 36
125 Iran 12217 G 36 36
126 Iran 12218 A 36 36
127 Iran 12219 A 36 36
128 Iran 12220 T 36 36
129 Iran 12221 G 36 36
130 Iran 12222 T 36 36
131 Iran 12223 G 36 36
132 Iran 12224 G 36 36
133 Iran 12225 C 36 36
134 Iran 12226 T 36 36
135 Iran 12227 A 36 36
136 Iran 12228 A 36 36
137 Iran 12229 A 36 36
138 Iran 12230 T 36 36
139 Iran 12231 C 36 36
140 Iran 12232 T 36 36
141 Iran 12233 G 36 36
142 Iran 12234 A 36 36
143 Iran 12235 A 36 36
144 Iran 12236 T 36 36
145 Iran 12237 T 36 36
146 Iran 12238 T 36 36
147 Iran 12239 G 36 36
148 Iran 12240 A 36 36
149 Iran 12241 C 36 36
150 Iran 12242 C 36 36
151 Iran 12243 G A 36 35 Arg3993His
152 Iran 12244 T 36 36
153 Iran 12245 G 36 36
154 Iran 12246 A 36 36
155 Iran 12247 T 36 36
156 Iran 12248 G 36 36
157 Iran 12249 C 36 36
158 Iran 12250 A 36 36
159 Iran 12251 G 36 36
160 Iran 12252 C 36 36
161 Iran 12253 C 36 36
162 Iran 12254 A 36 36
163 Iran 12255 T 36 36
164 Iran 12256 G 36 36
165 Iran 12257 C 36 36
166 Iran 12258 A 36 36
167 Iran 12259 A 36 36
168 Iran 12260 C 36 36
169 Iran 12261 G 36 36
170 Iran 12262 T 36 36
171 Iran 12263 A 36 36
172 Iran 12264 A 36 36
173 Iran 12265 G 36 36
174 Iran 12266 T 36 36
175 Iran 12267 T 36 36
176 Iran 12268 G 36 36
177 Iran 12269 G 36 36
178 Iran 12270 A 36 36
179 Iran 12271 A 36 36
180 Iran 12272 A 36 36
181 Iran 12273 A 36 36
182 Iran 12274 G 36 36
183 Iran 12275 A 36 36
184 Iran 12276 T 36 36
185 Iran 12277 G 36 36
186 Iran 12278 G 36 36
187 Iran 12279 C 36 36
188 Iran 12280 T 36 36
189 Iran 12281 G 36 36
190 Iran 12282 A 36 36
191 Iran 12283 T 36 36
192 Iran 12284 C 36 36
193 Iran 12285 A 36 36
194 Iran 12286 A 36 36
195 Iran 12287 G 36 36
196 Iran 12288 C 36 36
197 Iran 12289 T 36 36
198 Iran 12290 A 36 36
199 Iran 12291 T 36 36
200 Iran 12292 G 36 36
201 Iran 12293 A 36 36
202 Iran 12294 C 36 36
203 Iran 12295 C 36 36
204 Iran 12296 C 36 36
205 Iran 12297 A 36 36
206 Iran 12298 A 36 36
207 Iran 12299 A 36 36
208 Iran 12300 T 36 36
209 Iran 12301 G 36 36
210 Iran 12302 T 36 36
211 Iran 12303 A 36 36
212 Iran 12304 T 36 36
213 Iran 12305 A 36 36
214 Iran 12306 A 36 36
215 Iran 12307 A 36 36
216 Iran 12308 C 36 36
217 Iran 12309 A 36 36
218 Iran 12310 G 36 36
219 Iran 12311 G 36 36
220 Iran 12312 C 36 36
221 Iran 12313 T 36 36
222 Iran 12314 A 36 36
223 Iran 12315 G 36 36
224 Iran 12316 A 36 36
225 Iran 12317 T 36 36
226 Iran 12318 C 36 36
227 Iran 12319 T 36 36
228 Iran 12320 G 36 36
229 Iran 12321 A 36 36
230 Iran 12322 G 36 36
231 Iran 12323 G 36 36
232 Iran 12324 A 36 36
233 Iran 12325 C 36 36
234 Iran 12326 A 36 36
235 Iran 12327 A 36 36
236 Iran 12328 G 36 36
237 Iran 12329 A 36 36
238 Iran 12330 G 36 36
239 Iran 12331 G 36 36
240 Iran 12332 G 36 36
241 Iran 12333 C 36 36
242 Iran 12334 A 36 36
243 Iran 12335 A 36 36
244 Iran 12336 A 36 36
245 Iran 12337 A 36 36
246 Iran 12338 G 36 36
247 Iran 12339 T 36 36
248 Iran 12340 T 36 36
249 Iran 12341 A 36 36
250 Iran 12342 C 36 36
251 Iran 12343 T 36 36
252 Iran 12344 A 36 36
253 Iran 12345 G 36 36
254 Iran 12346 T 36 36
255 Iran 12347 G 36 36
256 Iran 12348 C 36 36
257 Iran 12349 T 36 36
258 Iran 12350 A 36 36
259 Iran 12351 T 36 36
260 Iran 12352 G 36 36
261 Iran 12353 C 36 36
262 Iran 12354 A 36 36
263 Iran 12355 G 36 36
264 Iran 12356 A 36 36
265 Iran 12357 C 36 36
266 Iran 12358 A 36 36
267 Iran 12359 A 36 36
268 Iran 12360 T 36 36
269 Iran 12361 G 36 36
270 Iran 12362 C 36 36
271 Iran 12363 T 36 36
272 Iran 12364 T 36 36
273 Iran 12365 T 36 36
274 Iran 12366 T 36 36
275 Iran 12367 C 36 36
276 Iran 12368 A 36 36
277 Iran 12369 C 36 36
278 Iran 12370 T 36 36
279 Iran 12371 A 36 36
280 Iran 12372 T 36 36
281 Iran 12373 G 36 36
282 Iran 12374 C 36 36
283 Iran 12375 T 36 36
284 Iran 12376 T 36 36
285 Iran 12377 A 36 36
286 Iran 12378 G 36 36
287 Iran 12379 A 36 36
288 Iran 12380 A 36 36
289 Iran 12381 A 36 36
290 Iran 12382 G 36 36
291 Iran 12383 T 36 36
292 Iran 12384 T 36 36
293 Iran 12385 G 36 36
294 Iran 12386 G 36 36
295 Iran 12387 A 36 36
296 Iran 12388 T 36 36
297 Iran 12389 A 36 36
298 Iran 12390 A 36 36
299 Iran 12391 T 36 36
300 Iran 12392 G 36 36
301 Iran 12393 A 36 36
302 Iran 12394 T 36 36
303 Iran 12395 G 36 36
304 Iran 12396 C 36 36
305 Iran 12397 A 36 36
306 Iran 12398 C 36 36
307 Iran 12399 T 36 36
308 Iran 12400 C 36 36
309 Iran 12401 A 36 36
310 Iran 12402 A 36 36
311 Iran 12403 C 36 36
312 Iran 12404 A 36 36
313 Iran 12405 A 36 36
314 Iran 12406 C 36 36
315 Iran 12407 A 36 36
316 Iran 12408 T 36 36
317 Iran 12409 T 36 36
318 Iran 12410 A G 36 35 Ile4049Val
319 Iran 12411 T 36 36
320 Iran 12412 C 36 36
321 Iran 12413 A 36 36
322 Iran 12414 A 36 36
323 Iran 12415 C 36 36
324 Iran 12416 A 36 36
325 Iran 12417 A 36 36
326 Iran 12418 T 36 36
327 Iran 12419 G 36 36
328 Iran 12420 C 36 36
329 Iran 12421 A 36 36
330 Iran 12422 A 36 36
331 Iran 12423 G 36 36
332 Iran 12424 A 36 36
333 Iran 12425 G 36 36
334 Iran 12426 A 36 36
335 Iran 12427 T 36 36
336 Iran 12428 G 36 36
337 Iran 12429 G 36 36
338 Iran 12430 T 36 36
339 Iran 12431 T 36 36
340 Iran 12432 G 36 36
341 Iran 12433 T 36 36
342 Iran 12434 G 36 36
343 Iran 12435 T 36 36
344 Iran 12436 T 36 36
345 Iran 12437 C 36 36
346 Iran 12438 C 36 36
347 Iran 12439 C 36 36
348 Iran 12440 T 36 36
349 Iran 12441 T 36 36
350 Iran 12442 G 36 36
351 Iran 12443 A 36 36
352 Iran 12444 A 36 36
353 Iran 12445 C 36 36
354 Iran 12446 A 36 36
355 Iran 12447 T 36 36
356 Iran 12448 A 36 36
357 Iran 12449 A 36 36
358 Iran 12450 T 36 36
359 Iran 12451 A 36 36
360 Iran 12452 C 36 36
361 Iran 12453 C 36 36
362 Iran 12454 T 36 36
363 Iran 12455 C 36 36
364 Iran 12456 T 36 36
365 Iran 12457 T 36 36
366 Iran 12458 A 36 36
367 Iran 12459 C 36 36
368 Iran 12460 A 36 36
369 Iran 12461 A 36 36
370 Iran 12462 C 36 36
371 Iran 12463 A 36 36
372 Iran 12464 G 36 36
373 Iran 12465 C 36 36
374 Iran 12466 A 36 36
375 Iran 12467 G 36 36
376 Iran 12468 C 36 36
377 Iran 12469 C 36 36
378 Iran 12470 A 36 36
379 Iran 12471 A 36 36
380 Iran 12472 A 36 36
381 Iran 12473 C 36 36
382 Iran 12474 T 36 36
383 Iran 12475 A 36 36
384 Iran 12476 A 36 36
385 Iran 12477 T 36 36
386 Iran 12478 G 36 36
387 Iran 12479 G 36 36
388 Iran 12480 T 36 36
389 Iran 12481 T 36 36
390 Iran 12482 G 36 36
391 Iran 12483 T 36 36
392 Iran 12484 C 36 36
393 Iran 12485 A 36 36
394 Iran 12486 T 36 36
395 Iran 12487 A 36 36
396 Iran 12488 C 36 36
397 Iran 12489 C 36 36
398 Iran 12490 A 36 36
399 Iran 12491 G 36 36
400 Iran 12492 A 36 36
401 Iran 12493 C G 36 35 Asp4076Glu
402 Iran 12494 T 36 36
403 Iran 12495 A 36 36
404 Iran 12496 T 36 36
405 Iran 12497 A 36 36
406 Iran 12498 A 36 36
407 Iran 12499 C 36 36
408 Iran 12500 A 36 36
409 Iran 12501 C 36 36
410 Iran 12502 A 36 36
411 Iran 12503 T 36 36
412 Iran 12504 A 36 36
413 Iran 12505 T 36 36
414 Iran 12506 A 36 36
415 Iran 12507 A 36 36
416 Iran 12508 A 36 36
417 Iran 12509 A 36 36
418 Iran 12510 A 36 36
419 Iran 12511 T 36 36
420 Iran 12512 A 36 36
421 Iran 12513 C 36 36
422 Iran 12514 G 36 36
423 Iran 12515 T 36 36
424 Iran 12516 G 36 36
425 Iran 12517 T 36 36
426 Iran 12518 G 36 36
427 Iran 12519 A 36 36
428 Iran 12520 T 36 36
429 Iran 12521 G 36 36
430 Iran 12522 G 36 36
431 Iran 12523 T 36 36
432 Iran 12524 A 36 36
433 Iran 12525 C 36 36
434 Iran 12526 A 36 36
435 Iran 12527 A 36 36
436 Iran 12528 C 36 36
437 Iran 12529 A 36 36
438 Iran 12530 T 36 36
439 Iran 12531 T 36 36
440 Iran 12532 T 36 36
441 Iran 12533 A 36 36
442 Iran 12534 C 36 36
443 Iran 12535 T 36 36
444 Iran 12536 T 36 36
445 Iran 12537 A 36 36
446 Iran 12538 T 36 36
447 Iran 12539 G 36 36
448 Iran 12540 C 36 36
449 Iran 12541 A 36 36
450 Iran 12542 T 36 36
451 Iran 12543 C 36 36
452 Iran 12544 A 36 36
453 Iran 12545 G 36 36
454 Iran 12546 C 36 36
455 Iran 12547 A 36 36
456 Iran 12548 T 36 36
457 Iran 12549 T 36 36
458 Iran 12550 G 36 36
459 Iran 12551 T 36 36
460 Iran 12552 G 36 36
461 Iran 12553 G 36 36
462 Iran 12554 G 36 36
463 Iran 12555 A 36 36
464 Iran 12556 A 36 36
465 Iran 12557 A 36 36
466 Iran 12558 T 36 36
467 Iran 12559 C 36 36
468 Iran 12560 C 36 36
469 Iran 12561 A 36 36
470 Iran 12562 A 36 36
471 Iran 12563 C 36 36
472 Iran 12564 A 36 36
473 Iran 12565 G 36 36
474 Iran 12566 G 36 36
475 Iran 12567 T 36 36
476 Iran 12568 T 36 36
477 Iran 12569 G 36 36
478 Iran 12570 T 36 36
479 Iran 12571 A 36 36
480 Iran 12572 G 36 36
481 Iran 12573 A 36 36
482 Iran 12574 T 36 36
483 Iran 12575 G 36 36
484 Iran 12576 C 36 36
485 Iran 12577 A 36 36
486 Iran 12578 G 36 36
487 Iran 12579 A 36 36
488 Iran 12580 T 36 36
489 Iran 12581 A 36 36
490 Iran 12582 G 36 36
491 Iran 12583 T 36 36
492 Iran 12584 A 36 36
493 Iran 12585 A 36 36
494 Iran 12586 A 36 36
495 Iran 12587 A 36 36
496 Iran 12588 T 36 36
497 Iran 12589 T 36 36
498 Iran 12590 G 36 36
499 Iran 12591 T 36 36
500 Iran 12592 T 36 36
501 Iran 12593 C 36 36
502 Iran 12594 A 36 36
503 Iran 12595 A 36 36
504 Iran 12596 C 36 36
505 Iran 12597 T 36 36
506 Iran 12598 T 36 36
507 Iran 12599 A 36 36
508 Iran 12600 G 36 36
509 Iran 12601 T 36 36
510 Iran 12602 G 36 36
511 Iran 12603 A 36 36
512 Iran 12604 A 36 36
513 Iran 12605 A 36 36
514 Iran 12606 T 36 36
515 Iran 12607 T 36 36
516 Iran 12608 A 36 36
517 Iran 12609 G 36 36
518 Iran 12610 T 36 36
519 Iran 12611 A 36 36
520 Iran 12612 T 36 36
521 Iran 12613 G 36 36
522 Iran 12614 G 36 36
523 Iran 12615 A 36 36
524 Iran 12616 C 36 36
525 Iran 12617 A 36 36
526 Iran 12618 A 36 36
527 Iran 12619 T 36 36
528 Iran 12620 T 36 36
529 Iran 12621 C 36 36
530 Iran 12622 A 36 36
531 Iran 12623 C 36 36
532 Iran 12624 C 36 36
533 Iran 12625 T 36 36
534 Iran 12626 A 36 36
535 Iran 12627 A 36 36
536 Iran 12628 T 36 36
537 Iran 12629 T 36 36
538 Iran 12630 T 36 36
539 Iran 12631 A 36 36
540 Iran 12632 G 36 36
541 Iran 12633 C 36 36
542 Iran 12634 A 36 36
543 Iran 12635 T 36 36
544 Iran 12636 G 36 36
545 Iran 12637 G 36 36
546 Iran 12638 C 36 36
547 Iran 12639 C 36 36
548 Iran 12640 T 36 36
549 Iran 12641 C 36 36
550 Iran 12642 T 36 36
551 Iran 12643 T 36 36
552 Iran 12644 A 36 36
553 Iran 12645 T 36 36
554 Iran 12646 T 36 36
555 Iran 12647 G 36 36
556 Iran 12648 T 36 36
557 Iran 12649 A 36 36
558 Iran 12650 A 36 36
559 Iran 12651 C 36 36
560 Iran 12652 A 36 36
561 Iran 12653 G 36 36
562 Iran 12654 C 36 36
563 Iran 12655 T 36 36
564 Iran 12656 T 36 36
565 Iran 12657 T 36 36
566 Iran 12658 A 36 36
567 Iran 12659 A 36 36
568 Iran 12660 G 36 36
569 Iran 12661 G 36 36
570 Iran 12662 G 36 36
571 Iran 12663 C 36 36
572 Iran 12664 C 36 36
573 Iran 12665 A 36 36
574 Iran 12666 A 36 36
575 Iran 12667 T 36 36
576 Iran 12668 T 36 36
577 Iran 12669 C 36 36
578 Iran 12670 T 36 36
579 Iran 12671 G 36 36
580 Iran 12672 C 36 36
581 Iran 12673 T 36 36
582 Iran 12674 G 36 36
583 Iran 12675 T 36 36
584 Iran 12676 C 36 36
585 Iran 12677 A 36 36
586 Iran 12678 A 36 36
587 Iran 12679 A 36 36
588 Iran 12680 T 36 36
589 Iran 12681 T 36 36
590 Iran 12682 A 36 36
591 Iran 12683 C 36 36
592 Iran 12684 A 36 36
593 Iran 12685 G 36 36