National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84                                      
C   6                                      
D   39                                      
E   27                                      
F   15                                      
G   9                                      
I   30                                      
K   45                                      
L   54                                      
M   27                                      
N   39                                      
P   18                                      
Q   33                                      
R   21                                      
S   45         1                            
T   39                                      
V   39         1                            
W   6                                      
Y   18                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Greece 12092 G 139 139
1 Greece 12093 C 139 139
2 Greece 12094 T 139 139
3 Greece 12095 A 139 139
4 Greece 12096 T 139 139
5 Greece 12097 A 139 139
6 Greece 12098 G 139 139
7 Greece 12099 C 139 139
8 Greece 12100 C 139 139
9 Greece 12101 T 139 139
10 Greece 12102 C 139 139
11 Greece 12103 A 139 139
12 Greece 12104 G 139 139
13 Greece 12105 A 139 139
14 Greece 12106 G 139 139
15 Greece 12107 T 139 139
16 Greece 12108 T 139 139
17 Greece 12109 T 139 139
18 Greece 12110 A 139 139
19 Greece 12111 G 139 139
20 Greece 12112 T 139 139
21 Greece 12113 T 139 139
22 Greece 12114 C 139 139
23 Greece 12115 C 139 139
24 Greece 12116 C 139 139
25 Greece 12117 T 139 139
26 Greece 12118 T 139 139
27 Greece 12119 C 139 139
28 Greece 12120 C 139 139
29 Greece 12121 A 139 139
30 Greece 12122 T 139 139
31 Greece 12123 C 139 139
32 Greece 12124 A 139 139
33 Greece 12125 T 139 139
34 Greece 12126 A 139 139
35 Greece 12127 T 139 139
36 Greece 12128 G 139 139
37 Greece 12129 C 139 139
38 Greece 12130 A 139 139
39 Greece 12131 G 139 139
40 Greece 12132 C 139 139
41 Greece 12133 T 139 139
42 Greece 12134 T 139 139
43 Greece 12135 T 139 139
44 Greece 12136 T 139 139
45 Greece 12137 G 139 139
46 Greece 12138 C 139 139
47 Greece 12139 T 139 139
48 Greece 12140 A 139 139
49 Greece 12141 C 139 139
50 Greece 12142 T 139 139
51 Greece 12143 G 139 139
52 Greece 12144 C 139 139
53 Greece 12145 T 139 139
54 Greece 12146 C 139 139
55 Greece 12147 A 139 139
56 Greece 12148 A 139 139
57 Greece 12149 G 139 139
58 Greece 12150 A 139 139
59 Greece 12151 A 139 139
60 Greece 12152 G 139 139
61 Greece 12153 C 139 139
62 Greece 12154 T 139 139
63 Greece 12155 T 139 139
64 Greece 12156 A 139 139
65 Greece 12157 T 139 139
66 Greece 12158 G 139 139
67 Greece 12159 A 139 139
68 Greece 12160 G 139 139
69 Greece 12161 C 139 139
70 Greece 12162 A 139 139
71 Greece 12163 G 139 139
72 Greece 12164 G 139 139
73 Greece 12165 C 139 139
74 Greece 12166 T 139 139
75 Greece 12167 G 139 139
76 Greece 12168 T 139 139
77 Greece 12169 T 139 139
78 Greece 12170 G 139 139
79 Greece 12171 C 139 139
80 Greece 12172 T 139 139
81 Greece 12173 A 139 139
82 Greece 12174 A 139 139
83 Greece 12175 T 139 139
84 Greece 12176 G 139 139
85 Greece 12177 G 139 139
86 Greece 12178 T 139 139
87 Greece 12179 G 139 139
88 Greece 12180 A 139 139
89 Greece 12181 T 139 139
90 Greece 12182 T 139 139
91 Greece 12183 C 139 139
92 Greece 12184 T 139 139
93 Greece 12185 G 139 139
94 Greece 12186 A 139 139
95 Greece 12187 A 139 139
96 Greece 12188 G 139 139
97 Greece 12189 T 139 139
98 Greece 12190 T 139 139
99 Greece 12191 G T 139 138 Val3976Phe
100 Greece 12192 T 139 139
101 Greece 12193 T 139 139
102 Greece 12194 C 139 139
103 Greece 12195 T 139 139
104 Greece 12196 T 139 139
105 Greece 12197 A 139 139
106 Greece 12198 A 139 139
107 Greece 12199 A 139 139
108 Greece 12200 A 139 139
109 Greece 12201 A 139 139
110 Greece 12202 G 139 139
111 Greece 12203 T 139 139
112 Greece 12204 T 139 139
113 Greece 12205 G 139 139
114 Greece 12206 A 139 139
115 Greece 12207 A 139 139
116 Greece 12208 G 139 139
117 Greece 12209 A 139 139
118 Greece 12210 A 139 139
119 Greece 12211 G 139 139
120 Greece 12212 T 139 139
121 Greece 12213 C T 139 138 Ser3983Phe
122 Greece 12214 T 139 139
123 Greece 12215 T 139 139
124 Greece 12216 T 139 139
125 Greece 12217 G 139 139
126 Greece 12218 A 139 139
127 Greece 12219 A 139 139
128 Greece 12220 T 139 139
129 Greece 12221 G 139 139
130 Greece 12222 T 139 139
131 Greece 12223 G 139 139
132 Greece 12224 G 139 139
133 Greece 12225 C 139 139
134 Greece 12226 T 139 139
135 Greece 12227 A 139 139
136 Greece 12228 A 139 139
137 Greece 12229 A 139 139
138 Greece 12230 T 139 139
139 Greece 12231 C 139 139
140 Greece 12232 T 139 139
141 Greece 12233 G 139 139
142 Greece 12234 A 139 139
143 Greece 12235 A 139 139
144 Greece 12236 T 140 140
145 Greece 12237 T 140 140
146 Greece 12238 T 140 140
147 Greece 12239 G 140 140
148 Greece 12240 A 140 140
149 Greece 12241 C 140 140
150 Greece 12242 C 140 140
151 Greece 12243 G 140 140
152 Greece 12244 T 140 140
153 Greece 12245 G 140 140
154 Greece 12246 A 140 140
155 Greece 12247 T 140 140
156 Greece 12248 G 140 140
157 Greece 12249 C 140 140
158 Greece 12250 A 140 140
159 Greece 12251 G 140 140
160 Greece 12252 C 140 140
161 Greece 12253 C 140 140
162 Greece 12254 A 140 140
163 Greece 12255 T 140 140
164 Greece 12256 G 140 140
165 Greece 12257 C 140 140
166 Greece 12258 A 140 140
167 Greece 12259 A 140 140
168 Greece 12260 C 140 140
169 Greece 12261 G 140 140
170 Greece 12262 T 140 140
171 Greece 12263 A 140 140
172 Greece 12264 A 140 140
173 Greece 12265 G 140 140
174 Greece 12266 T 140 140
175 Greece 12267 T 140 140
176 Greece 12268 G 140 140
177 Greece 12269 G 140 140
178 Greece 12270 A 140 140
179 Greece 12271 A 140 140
180 Greece 12272 A 140 140
181 Greece 12273 A 140 140
182 Greece 12274 G 140 140
183 Greece 12275 A 140 140
184 Greece 12276 T 140 140
185 Greece 12277 G 140 140
186 Greece 12278 G 140 140
187 Greece 12279 C 140 140
188 Greece 12280 T 140 140
189 Greece 12281 G 140 140
190 Greece 12282 A 140 140
191 Greece 12283 T 140 140
192 Greece 12284 C 140 140
193 Greece 12285 A 140 140
194 Greece 12286 A 140 140
195 Greece 12287 G 140 140
196 Greece 12288 C 140 140
197 Greece 12289 T 140 140
198 Greece 12290 A 140 140
199 Greece 12291 T 140 140
200 Greece 12292 G 140 140
201 Greece 12293 A 140 140
202 Greece 12294 C 140 140
203 Greece 12295 C 140 140
204 Greece 12296 C 140 140
205 Greece 12297 A 140 140
206 Greece 12298 A 140 140
207 Greece 12299 A 140 140
208 Greece 12300 T 140 140
209 Greece 12301 G 140 140
210 Greece 12302 T 140 140
211 Greece 12303 A 140 140
212 Greece 12304 T 140 140
213 Greece 12305 A 140 140
214 Greece 12306 A 140 140
215 Greece 12307 A 140 140
216 Greece 12308 C 140 140
217 Greece 12309 A 140 140
218 Greece 12310 G 140 140
219 Greece 12311 G 140 140
220 Greece 12312 C 140 140
221 Greece 12313 T 140 140
222 Greece 12314 A 140 140
223 Greece 12315 G 140 140
224 Greece 12316 A 140 140
225 Greece 12317 T 140 140
226 Greece 12318 C 140 140
227 Greece 12319 T 140 140
228 Greece 12320 G 140 140
229 Greece 12321 A 140 140
230 Greece 12322 G 140 140
231 Greece 12323 G 140 140
232 Greece 12324 A 140 140
233 Greece 12325 C 140 140
234 Greece 12326 A 140 140
235 Greece 12327 A 140 140
236 Greece 12328 G 140 140
237 Greece 12329 A 140 140
238 Greece 12330 G 140 140
239 Greece 12331 G 140 140
240 Greece 12332 G 140 140
241 Greece 12333 C 140 140
242 Greece 12334 A 140 140
243 Greece 12335 A 140 140
244 Greece 12336 A 140 140
245 Greece 12337 A 140 140
246 Greece 12338 G 140 140
247 Greece 12339 T 140 140
248 Greece 12340 T 140 140
249 Greece 12341 A 140 140
250 Greece 12342 C 140 140
251 Greece 12343 T 140 140
252 Greece 12344 A 140 140
253 Greece 12345 G 140 140
254 Greece 12346 T 140 140
255 Greece 12347 G 140 140
256 Greece 12348 C 140 140
257 Greece 12349 T 140 140
258 Greece 12350 A 140 140
259 Greece 12351 T 140 140
260 Greece 12352 G 140 140
261 Greece 12353 C 140 140
262 Greece 12354 A 140 140
263 Greece 12355 G 140 140
264 Greece 12356 A 140 140
265 Greece 12357 C 140 140
266 Greece 12358 A 140 140
267 Greece 12359 A 140 140
268 Greece 12360 T 140 140
269 Greece 12361 G 140 140
270 Greece 12362 C 140 140
271 Greece 12363 T 140 140
272 Greece 12364 T 140 140
273 Greece 12365 T 140 140
274 Greece 12366 T 140 140
275 Greece 12367 C 140 140
276 Greece 12368 A 140 140
277 Greece 12369 C 140 140
278 Greece 12370 T 140 140
279 Greece 12371 A 140 140
280 Greece 12372 T 140 140
281 Greece 12373 G 140 140
282 Greece 12374 C 140 140
283 Greece 12375 T 140 140
284 Greece 12376 T 140 140
285 Greece 12377 A 140 140
286 Greece 12378 G 140 140
287 Greece 12379 A 140 140
288 Greece 12380 A 140 140
289 Greece 12381 A 140 140
290 Greece 12382 G 140 140
291 Greece 12383 T 140 140
292 Greece 12384 T 140 140
293 Greece 12385 G 140 140
294 Greece 12386 G 140 140
295 Greece 12387 A 140 140
296 Greece 12388 T 140 140
297 Greece 12389 A 140 140
298 Greece 12390 A 140 140
299 Greece 12391 T 140 140
300 Greece 12392 G 140 140
301 Greece 12393 A 140 140
302 Greece 12394 T 140 140
303 Greece 12395 G 140 140
304 Greece 12396 C 140 140
305 Greece 12397 A 140 140
306 Greece 12398 C 140 140
307 Greece 12399 T 140 140
308 Greece 12400 C 140 140
309 Greece 12401 A 140 140
310 Greece 12402 A 140 140
311 Greece 12403 C 140 140
312 Greece 12404 A 140 140
313 Greece 12405 A 140 140
314 Greece 12406 C 140 140
315 Greece 12407 A 140 140
316 Greece 12408 T 140 140
317 Greece 12409 T 140 140
318 Greece 12410 A 140 140
319 Greece 12411 T 140 140
320 Greece 12412 C 140 140
321 Greece 12413 A 140 140
322 Greece 12414 A 140 140
323 Greece 12415 C 140 140
324 Greece 12416 A 140 140
325 Greece 12417 A 140 140
326 Greece 12418 T 140 140
327 Greece 12419 G 140 140
328 Greece 12420 C 140 140
329 Greece 12421 A 140 140
330 Greece 12422 A 140 140
331 Greece 12423 G 140 140
332 Greece 12424 A 140 140
333 Greece 12425 G 140 140
334 Greece 12426 A 140 140
335 Greece 12427 T 140 140
336 Greece 12428 G 140 140
337 Greece 12429 G 140 140
338 Greece 12430 T 140 140
339 Greece 12431 T 140 140
340 Greece 12432 G 140 140
341 Greece 12433 T 140 140
342 Greece 12434 G 140 140
343 Greece 12435 T 140 140
344 Greece 12436 T 140 140
345 Greece 12437 C 140 140
346 Greece 12438 C 140 140
347 Greece 12439 C 140 140
348 Greece 12440 T 139 139
349 Greece 12441 T 139 139
350 Greece 12442 G 139 139
351 Greece 12443 A 139 139
352 Greece 12444 A 139 139
353 Greece 12445 C 139 139
354 Greece 12446 A 139 139
355 Greece 12447 T 139 139
356 Greece 12448 A 139 139
357 Greece 12449 A 139 139
358 Greece 12450 T 139 139
359 Greece 12451 A 139 139
360 Greece 12452 C 139 139
361 Greece 12453 C 139 139
362 Greece 12454 T 139 139
363 Greece 12455 C 139 139
364 Greece 12456 T 139 139
365 Greece 12457 T 139 139
366 Greece 12458 A 139 139
367 Greece 12459 C 139 139
368 Greece 12460 A 139 139
369 Greece 12461 A 139 139
370 Greece 12462 C 139 139
371 Greece 12463 A 139 139
372 Greece 12464 G 139 139
373 Greece 12465 C 139 139
374 Greece 12466 A 139 139
375 Greece 12467 G 139 139
376 Greece 12468 C 139 139
377 Greece 12469 C 139 139
378 Greece 12470 A 139 139
379 Greece 12471 A 139 139
380 Greece 12472 A 139 139
381 Greece 12473 C 139 139
382 Greece 12474 T 139 139
383 Greece 12475 A 139 139
384 Greece 12476 A 139 139
385 Greece 12477 T 139 139
386 Greece 12478 G 139 139
387 Greece 12479 G 139 139
388 Greece 12480 T 139 139
389 Greece 12481 T 139 139
390 Greece 12482 G 139 139
391 Greece 12483 T 139 139
392 Greece 12484 C 139 139
393 Greece 12485 A 139 139
394 Greece 12486 T 139 139
395 Greece 12487 A 139 139
396 Greece 12488 C 139 139
397 Greece 12489 C 139 139
398 Greece 12490 A 139 139
399 Greece 12491 G 139 139
400 Greece 12492 A 139 139
401 Greece 12493 C 139 139
402 Greece 12494 T 139 139
403 Greece 12495 A 139 139
404 Greece 12496 T 139 139
405 Greece 12497 A 139 139
406 Greece 12498 A 139 139
407 Greece 12499 C 139 139
408 Greece 12500 A 139 139
409 Greece 12501 C 139 139
410 Greece 12502 A 139 139
411 Greece 12503 T 139 139
412 Greece 12504 A 139 139
413 Greece 12505 T 139 139
414 Greece 12506 A 139 139
415 Greece 12507 A 139 139
416 Greece 12508 A 139 139
417 Greece 12509 A 139 139
418 Greece 12510 A 139 139
419 Greece 12511 T 139 139
420 Greece 12512 A 139 139
421 Greece 12513 C 139 139
422 Greece 12514 G 139 139
423 Greece 12515 T 139 139
424 Greece 12516 G 139 139
425 Greece 12517 T 139 139
426 Greece 12518 G 139 139
427 Greece 12519 A 139 139
428 Greece 12520 T 139 139
429 Greece 12521 G 139 139
430 Greece 12522 G 139 139
431 Greece 12523 T 139 139
432 Greece 12524 A 139 139
433 Greece 12525 C 139 139
434 Greece 12526 A 139 139
435 Greece 12527 A 139 139
436 Greece 12528 C 139 139
437 Greece 12529 A 139 139
438 Greece 12530 T 139 139
439 Greece 12531 T 139 139
440 Greece 12532 T 139 139
441 Greece 12533 A 139 139
442 Greece 12534 C 139 139
443 Greece 12535 T 139 139
444 Greece 12536 T 139 139
445 Greece 12537 A 139 139
446 Greece 12538 T 139 139
447 Greece 12539 G 139 139
448 Greece 12540 C 139 139
449 Greece 12541 A 139 139
450 Greece 12542 T 139 139
451 Greece 12543 C 139 139
452 Greece 12544 A 139 139
453 Greece 12545 G 139 139
454 Greece 12546 C 139 139
455 Greece 12547 A 139 139
456 Greece 12548 T 139 139
457 Greece 12549 T 139 139
458 Greece 12550 G 139 139
459 Greece 12551 T 139 139
460 Greece 12552 G 139 139
461 Greece 12553 G 139 139
462 Greece 12554 G 139 139
463 Greece 12555 A 139 139
464 Greece 12556 A 139 139
465 Greece 12557 A 139 139
466 Greece 12558 T 139 139
467 Greece 12559 C 139 139
468 Greece 12560 C 139 139
469 Greece 12561 A 139 139
470 Greece 12562 A 139 139
471 Greece 12563 C 139 139
472 Greece 12564 A 139 139
473 Greece 12565 G 139 139
474 Greece 12566 G 139 139
475 Greece 12567 T 139 139
476 Greece 12568 T 139 139
477 Greece 12569 G 139 139
478 Greece 12570 T 139 139
479 Greece 12571 A 139 139
480 Greece 12572 G 139 139
481 Greece 12573 A 139 139
482 Greece 12574 T 139 139
483 Greece 12575 G 139 139
484 Greece 12576 C 139 139
485 Greece 12577 A 139 139
486 Greece 12578 G 139 139
487 Greece 12579 A 139 139
488 Greece 12580 T 139 139
489 Greece 12581 A 139 139
490 Greece 12582 G 139 139
491 Greece 12583 T 139 139
492 Greece 12584 A 139 139
493 Greece 12585 A 139 139
494 Greece 12586 A 139 139
495 Greece 12587 A 139 139
496 Greece 12588 T 139 139
497 Greece 12589 T 139 139
498 Greece 12590 G 139 139
499 Greece 12591 T 139 139
500 Greece 12592 T 138 138
501 Greece 12593 C 138 138
502 Greece 12594 A 138 138
503 Greece 12595 A 138 138
504 Greece 12596 C 138 138
505 Greece 12597 T 138 138
506 Greece 12598 T 138 138
507 Greece 12599 A 138 138
508 Greece 12600 G 138 138
509 Greece 12601 T 138 138
510 Greece 12602 G 138 138
511 Greece 12603 A 138 138
512 Greece 12604 A 138 138
513 Greece 12605 A 138 138
514 Greece 12606 T 138 138
515 Greece 12607 T 138 138
516 Greece 12608 A 138 138
517 Greece 12609 G 138 138
518 Greece 12610 T 138 138
519 Greece 12611 A 138 138
520 Greece 12612 T 138 138
521 Greece 12613 G 138 138
522 Greece 12614 G 138 138
523 Greece 12615 A 138 138
524 Greece 12616 C 138 138
525 Greece 12617 A 138 138
526 Greece 12618 A 138 138
527 Greece 12619 T 138 138
528 Greece 12620 T 138 138
529 Greece 12621 C 138 138
530 Greece 12622 A 138 138
531 Greece 12623 C 138 138
532 Greece 12624 C 138 138
533 Greece 12625 T 138 138
534 Greece 12626 A 138 138
535 Greece 12627 A 138 138
536 Greece 12628 T 138 138
537 Greece 12629 T 138 138
538 Greece 12630 T 138 138
539 Greece 12631 A 138 138
540 Greece 12632 G 138 138
541 Greece 12633 C 138 138
542 Greece 12634 A 138 138
543 Greece 12635 T 138 138
544 Greece 12636 G 138 138
545 Greece 12637 G 138 138
546 Greece 12638 C 138 138
547 Greece 12639 C 138 138
548 Greece 12640 T 138 138
549 Greece 12641 C 138 138
550 Greece 12642 T 138 138
551 Greece 12643 T 138 138
552 Greece 12644 A 138 138
553 Greece 12645 T 138 138
554 Greece 12646 T 138 138
555 Greece 12647 G 138 138
556 Greece 12648 T 138 138
557 Greece 12649 A 138 138
558 Greece 12650 A 138 138
559 Greece 12651 C 138 138
560 Greece 12652 A 138 138
561 Greece 12653 G 138 138
562 Greece 12654 C 138 138
563 Greece 12655 T 138 138
564 Greece 12656 T 138 138
565 Greece 12657 T 138 138
566 Greece 12658 A 138 138
567 Greece 12659 A 138 138
568 Greece 12660 G 138 138
569 Greece 12661 G 138 138
570 Greece 12662 G 138 138
571 Greece 12663 C 138 138
572 Greece 12664 C 138 138
573 Greece 12665 A 138 138
574 Greece 12666 A 138 137
575 Greece 12667 T 138 138
576 Greece 12668 T 138 138
577 Greece 12669 C 138 138
578 Greece 12670 T 138 138
579 Greece 12671 G 138 138
580 Greece 12672 C 138 138
581 Greece 12673 T 138 138
582 Greece 12674 G 138 138
583 Greece 12675 T 138 138
584 Greece 12676 C 138 138
585 Greece 12677 A 138 138
586 Greece 12678 A 138 138
587 Greece 12679 A 137 137
588 Greece 12680 T 137 137
589 Greece 12681 T 137 137
590 Greece 12682 A 137 137
591 Greece 12683 C 137 137
592 Greece 12684 A 137 137
593 Greece 12685 G 137 137