National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84                                      
C   6                                      
D   39                                      
E   27                                      
F   15                                      
G   9                                      
I   30                                      
K   45                                      
L   54                                      
M   27                                      
N   39                                      
P   18                                      
Q   33                                      
R   21                                      
S   45                                      
T   39                                      
V   39                                      
W   6                                      
Y   18                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Georgia 12092 G 26 25
1 Georgia 12093 C 26 25
2 Georgia 12094 T 26 25
3 Georgia 12095 A 26 25
4 Georgia 12096 T 26 25
5 Georgia 12097 A 26 25
6 Georgia 12098 G 26 25
7 Georgia 12099 C 26 25
8 Georgia 12100 C 26 25
9 Georgia 12101 T 26 25
10 Georgia 12102 C 26 25
11 Georgia 12103 A 26 25
12 Georgia 12104 G 26 25
13 Georgia 12105 A 26 25
14 Georgia 12106 G 26 25
15 Georgia 12107 T 26 25
16 Georgia 12108 T 26 25
17 Georgia 12109 T 26 25
18 Georgia 12110 A 26 25
19 Georgia 12111 G 26 25
20 Georgia 12112 T 26 25
21 Georgia 12113 T 26 25
22 Georgia 12114 C 26 25
23 Georgia 12115 C 26 25
24 Georgia 12116 C 26 25
25 Georgia 12117 T 26 25
26 Georgia 12118 T 26 25
27 Georgia 12119 C 26 25
28 Georgia 12120 C 26 25
29 Georgia 12121 A 26 25
30 Georgia 12122 T 26 25
31 Georgia 12123 C 26 25
32 Georgia 12124 A 26 25
33 Georgia 12125 T 26 25
34 Georgia 12126 A 26 25
35 Georgia 12127 T 26 25
36 Georgia 12128 G 26 25
37 Georgia 12129 C 26 25
38 Georgia 12130 A 26 25
39 Georgia 12131 G 26 25
40 Georgia 12132 C 26 25
41 Georgia 12133 T 26 25
42 Georgia 12134 T 26 25
43 Georgia 12135 T 26 25
44 Georgia 12136 T 26 25
45 Georgia 12137 G 26 25
46 Georgia 12138 C 26 25
47 Georgia 12139 T 26 25
48 Georgia 12140 A 26 25
49 Georgia 12141 C 26 25
50 Georgia 12142 T 26 25
51 Georgia 12143 G 26 25
52 Georgia 12144 C 26 25
53 Georgia 12145 T 26 25
54 Georgia 12146 C 26 25
55 Georgia 12147 A 26 25
56 Georgia 12148 A 26 25
57 Georgia 12149 G 26 25
58 Georgia 12150 A 26 25
59 Georgia 12151 A 26 25
60 Georgia 12152 G 26 25
61 Georgia 12153 C 26 25
62 Georgia 12154 T 26 25
63 Georgia 12155 T 26 25
64 Georgia 12156 A 26 25
65 Georgia 12157 T 26 25
66 Georgia 12158 G 26 25
67 Georgia 12159 A 26 25
68 Georgia 12160 G 26 25
69 Georgia 12161 C 26 25
70 Georgia 12162 A 26 25
71 Georgia 12163 G 26 25
72 Georgia 12164 G 26 25
73 Georgia 12165 C 26 25
74 Georgia 12166 T 26 25
75 Georgia 12167 G 26 25
76 Georgia 12168 T 26 25
77 Georgia 12169 T 26 25
78 Georgia 12170 G 26 25
79 Georgia 12171 C 26 25
80 Georgia 12172 T 26 25
81 Georgia 12173 A 26 25
82 Georgia 12174 A 26 25
83 Georgia 12175 T 26 25
84 Georgia 12176 G 26 25
85 Georgia 12177 G 26 25
86 Georgia 12178 T 26 25
87 Georgia 12179 G 26 25
88 Georgia 12180 A 26 25
89 Georgia 12181 T 26 25
90 Georgia 12182 T 26 25
91 Georgia 12183 C 26 25
92 Georgia 12184 T 26 25
93 Georgia 12185 G 26 25
94 Georgia 12186 A 26 25
95 Georgia 12187 A 26 25
96 Georgia 12188 G 26 25
97 Georgia 12189 T 26 25
98 Georgia 12190 T 26 25
99 Georgia 12191 G 26 25
100 Georgia 12192 T 26 25
101 Georgia 12193 T 26 25
102 Georgia 12194 C 26 25
103 Georgia 12195 T 26 25
104 Georgia 12196 T 26 25
105 Georgia 12197 A 26 25
106 Georgia 12198 A 26 25
107 Georgia 12199 A 26 25
108 Georgia 12200 A 26 25
109 Georgia 12201 A 26 25
110 Georgia 12202 G 26 25
111 Georgia 12203 T 26 25
112 Georgia 12204 T 26 25
113 Georgia 12205 G 26 25
114 Georgia 12206 A 26 25
115 Georgia 12207 A 26 25
116 Georgia 12208 G 26 25
117 Georgia 12209 A 26 25
118 Georgia 12210 A 26 25
119 Georgia 12211 G 26 25
120 Georgia 12212 T 26 25
121 Georgia 12213 C 26 25
122 Georgia 12214 T 26 25
123 Georgia 12215 T 26 25
124 Georgia 12216 T 26 25
125 Georgia 12217 G 26 25
126 Georgia 12218 A 26 25
127 Georgia 12219 A 26 25
128 Georgia 12220 T 26 25
129 Georgia 12221 G 26 25
130 Georgia 12222 T 26 25
131 Georgia 12223 G 26 25
132 Georgia 12224 G 26 25
133 Georgia 12225 C 26 25
134 Georgia 12226 T 26 25
135 Georgia 12227 A 26 25
136 Georgia 12228 A 26 25
137 Georgia 12229 A 26 25
138 Georgia 12230 T 26 25
139 Georgia 12231 C 26 25
140 Georgia 12232 T 26 25
141 Georgia 12233 G 26 25
142 Georgia 12234 A 26 25
143 Georgia 12235 A 26 25
144 Georgia 12236 T 26 25
145 Georgia 12237 T 26 25
146 Georgia 12238 T 26 25
147 Georgia 12239 G 26 25
148 Georgia 12240 A 26 25
149 Georgia 12241 C 26 25
150 Georgia 12242 C 26 25
151 Georgia 12243 G 26 25
152 Georgia 12244 T 26 25
153 Georgia 12245 G 26 25
154 Georgia 12246 A 26 25
155 Georgia 12247 T 26 25
156 Georgia 12248 G 26 25
157 Georgia 12249 C 26 25
158 Georgia 12250 A 26 25
159 Georgia 12251 G 26 25
160 Georgia 12252 C 26 25
161 Georgia 12253 C 26 25
162 Georgia 12254 A 26 25
163 Georgia 12255 T 26 25
164 Georgia 12256 G 26 25
165 Georgia 12257 C 26 25
166 Georgia 12258 A 26 25
167 Georgia 12259 A 26 25
168 Georgia 12260 C 26 25
169 Georgia 12261 G 26 25
170 Georgia 12262 T 26 25
171 Georgia 12263 A 26 25
172 Georgia 12264 A 26 25
173 Georgia 12265 G 26 25
174 Georgia 12266 T 26 25
175 Georgia 12267 T 26 25
176 Georgia 12268 G 26 25
177 Georgia 12269 G 26 25
178 Georgia 12270 A 26 25
179 Georgia 12271 A 26 25
180 Georgia 12272 A 26 25
181 Georgia 12273 A 26 25
182 Georgia 12274 G 26 25
183 Georgia 12275 A 26 25
184 Georgia 12276 T 26 25
185 Georgia 12277 G 26 25
186 Georgia 12278 G 26 25
187 Georgia 12279 C 26 25
188 Georgia 12280 T 26 25
189 Georgia 12281 G 26 25
190 Georgia 12282 A 26 25
191 Georgia 12283 T 26 25
192 Georgia 12284 C 26 25
193 Georgia 12285 A 26 25
194 Georgia 12286 A 26 25
195 Georgia 12287 G 26 25
196 Georgia 12288 C 26 25
197 Georgia 12289 T 26 25
198 Georgia 12290 A 26 25
199 Georgia 12291 T 26 25
200 Georgia 12292 G 26 25
201 Georgia 12293 A 26 25
202 Georgia 12294 C 26 25
203 Georgia 12295 C 26 25
204 Georgia 12296 C 26 25
205 Georgia 12297 A 26 25
206 Georgia 12298 A 26 25
207 Georgia 12299 A 26 25
208 Georgia 12300 T 26 25
209 Georgia 12301 G 26 25
210 Georgia 12302 T 26 25
211 Georgia 12303 A 26 25
212 Georgia 12304 T 26 25
213 Georgia 12305 A 26 25
214 Georgia 12306 A 26 25
215 Georgia 12307 A 26 25
216 Georgia 12308 C 26 25
217 Georgia 12309 A 26 25
218 Georgia 12310 G 26 25
219 Georgia 12311 G 26 25
220 Georgia 12312 C 26 25
221 Georgia 12313 T 26 25
222 Georgia 12314 A 26 25
223 Georgia 12315 G 26 25
224 Georgia 12316 A 26 25
225 Georgia 12317 T 26 25
226 Georgia 12318 C 26 25
227 Georgia 12319 T 26 25
228 Georgia 12320 G 26 25
229 Georgia 12321 A 26 25
230 Georgia 12322 G 26 25
231 Georgia 12323 G 26 25
232 Georgia 12324 A 26 25
233 Georgia 12325 C 26 25
234 Georgia 12326 A 26 25
235 Georgia 12327 A 26 25
236 Georgia 12328 G 26 25
237 Georgia 12329 A 26 25
238 Georgia 12330 G 26 25
239 Georgia 12331 G 26 25
240 Georgia 12332 G 26 25
241 Georgia 12333 C 26 25
242 Georgia 12334 A 26 25
243 Georgia 12335 A 26 25
244 Georgia 12336 A 26 25
245 Georgia 12337 A 26 25
246 Georgia 12338 G 26 25
247 Georgia 12339 T 26 25
248 Georgia 12340 T 26 25
249 Georgia 12341 A 26 25
250 Georgia 12342 C 26 25
251 Georgia 12343 T 26 25
252 Georgia 12344 A 26 25
253 Georgia 12345 G 26 25
254 Georgia 12346 T 26 25
255 Georgia 12347 G 26 25
256 Georgia 12348 C 26 25
257 Georgia 12349 T 26 25
258 Georgia 12350 A 26 25
259 Georgia 12351 T 26 25
260 Georgia 12352 G 26 25
261 Georgia 12353 C 26 25
262 Georgia 12354 A 26 25
263 Georgia 12355 G 26 25
264 Georgia 12356 A 26 25
265 Georgia 12357 C 26 25
266 Georgia 12358 A 26 25
267 Georgia 12359 A 26 25
268 Georgia 12360 T 26 25
269 Georgia 12361 G 26 25
270 Georgia 12362 C 26 25
271 Georgia 12363 T 26 25
272 Georgia 12364 T 26 25
273 Georgia 12365 T 26 25
274 Georgia 12366 T 26 25
275 Georgia 12367 C 26 25
276 Georgia 12368 A 26 25
277 Georgia 12369 C 26 25
278 Georgia 12370 T 26 25
279 Georgia 12371 A 26 25
280 Georgia 12372 T 26 25
281 Georgia 12373 G 26 25
282 Georgia 12374 C 26 25
283 Georgia 12375 T 26 25
284 Georgia 12376 T 26 25
285 Georgia 12377 A 26 25
286 Georgia 12378 G 26 25
287 Georgia 12379 A 26 25
288 Georgia 12380 A 26 25
289 Georgia 12381 A 26 25
290 Georgia 12382 G 26 25
291 Georgia 12383 T 26 25
292 Georgia 12384 T 26 25
293 Georgia 12385 G 26 25
294 Georgia 12386 G 26 25
295 Georgia 12387 A 26 25
296 Georgia 12388 T 26 25
297 Georgia 12389 A 26 25
298 Georgia 12390 A 26 25
299 Georgia 12391 T 26 25
300 Georgia 12392 G 26 25
301 Georgia 12393 A 26 25
302 Georgia 12394 T 26 25
303 Georgia 12395 G 26 25
304 Georgia 12396 C 26 25
305 Georgia 12397 A 26 25
306 Georgia 12398 C 26 25
307 Georgia 12399 T 26 25
308 Georgia 12400 C 26 25
309 Georgia 12401 A 26 25
310 Georgia 12402 A 26 25
311 Georgia 12403 C 26 25
312 Georgia 12404 A 26 25
313 Georgia 12405 A 26 25
314 Georgia 12406 C 26 25
315 Georgia 12407 A 26 25
316 Georgia 12408 T 26 25
317 Georgia 12409 T 26 25
318 Georgia 12410 A 26 25
319 Georgia 12411 T 26 25
320 Georgia 12412 C 26 25
321 Georgia 12413 A 26 25
322 Georgia 12414 A 26 25
323 Georgia 12415 C 26 25
324 Georgia 12416 A 26 25
325 Georgia 12417 A 26 25
326 Georgia 12418 T 26 25
327 Georgia 12419 G 26 25
328 Georgia 12420 C 26 25
329 Georgia 12421 A 26 25
330 Georgia 12422 A 26 25
331 Georgia 12423 G 26 25
332 Georgia 12424 A 26 25
333 Georgia 12425 G 26 25
334 Georgia 12426 A 26 25
335 Georgia 12427 T 26 25
336 Georgia 12428 G 26 25
337 Georgia 12429 G 26 25
338 Georgia 12430 T 26 25
339 Georgia 12431 T 26 25
340 Georgia 12432 G 26 25
341 Georgia 12433 T 26 25
342 Georgia 12434 G 26 25
343 Georgia 12435 T 26 25
344 Georgia 12436 T 26 25
345 Georgia 12437 C 26 25
346 Georgia 12438 C 26 25
347 Georgia 12439 C 26 25
348 Georgia 12440 T 26 25
349 Georgia 12441 T 26 25
350 Georgia 12442 G 26 25
351 Georgia 12443 A 26 25
352 Georgia 12444 A 26 25
353 Georgia 12445 C 26 25
354 Georgia 12446 A 26 25
355 Georgia 12447 T 26 25
356 Georgia 12448 A 26 25
357 Georgia 12449 A 26 25
358 Georgia 12450 T 26 25
359 Georgia 12451 A 26 25
360 Georgia 12452 C 26 25
361 Georgia 12453 C 26 25
362 Georgia 12454 T 26 25
363 Georgia 12455 C 26 25
364 Georgia 12456 T 26 25
365 Georgia 12457 T 26 25
366 Georgia 12458 A 26 25
367 Georgia 12459 C 26 25
368 Georgia 12460 A 26 25
369 Georgia 12461 A 26 25
370 Georgia 12462 C 26 25
371 Georgia 12463 A 26 25
372 Georgia 12464 G 26 25
373 Georgia 12465 C 26 25
374 Georgia 12466 A 26 25
375 Georgia 12467 G 26 25
376 Georgia 12468 C 26 25
377 Georgia 12469 C 26 25
378 Georgia 12470 A 26 25
379 Georgia 12471 A 26 25
380 Georgia 12472 A 26 25
381 Georgia 12473 C 26 25
382 Georgia 12474 T 26 25
383 Georgia 12475 A 26 25
384 Georgia 12476 A 26 25
385 Georgia 12477 T 26 25
386 Georgia 12478 G 26 25
387 Georgia 12479 G 26 25
388 Georgia 12480 T 26 25
389 Georgia 12481 T 26 25
390 Georgia 12482 G 26 25
391 Georgia 12483 T 26 25
392 Georgia 12484 C 26 25
393 Georgia 12485 A 26 25
394 Georgia 12486 T 26 25
395 Georgia 12487 A 26 25
396 Georgia 12488 C 26 25
397 Georgia 12489 C 26 25
398 Georgia 12490 A 26 25
399 Georgia 12491 G 26 25
400 Georgia 12492 A 26 25
401 Georgia 12493 C 26 25
402 Georgia 12494 T 26 25
403 Georgia 12495 A 26 25
404 Georgia 12496 T 26 25
405 Georgia 12497 A 26 25
406 Georgia 12498 A 26 25
407 Georgia 12499 C 26 25
408 Georgia 12500 A 26 25
409 Georgia 12501 C 26 25
410 Georgia 12502 A 26 25
411 Georgia 12503 T 26 25
412 Georgia 12504 A 26 25
413 Georgia 12505 T 26 25
414 Georgia 12506 A 26 25
415 Georgia 12507 A 26 25
416 Georgia 12508 A 26 25
417 Georgia 12509 A 26 25
418 Georgia 12510 A 26 25
419 Georgia 12511 T 26 25
420 Georgia 12512 A 26 25
421 Georgia 12513 C 26 25
422 Georgia 12514 G 26 25
423 Georgia 12515 T 26 25
424 Georgia 12516 G 26 25
425 Georgia 12517 T 26 25
426 Georgia 12518 G 26 25
427 Georgia 12519 A 26 25
428 Georgia 12520 T 26 25
429 Georgia 12521 G 26 25
430 Georgia 12522 G 26 25
431 Georgia 12523 T 26 25
432 Georgia 12524 A 26 25
433 Georgia 12525 C 26 25
434 Georgia 12526 A 26 25
435 Georgia 12527 A 26 25
436 Georgia 12528 C 26 25
437 Georgia 12529 A 26 25
438 Georgia 12530 T 26 25
439 Georgia 12531 T 26 25
440 Georgia 12532 T 26 25
441 Georgia 12533 A 26 25
442 Georgia 12534 C 26 25
443 Georgia 12535 T 26 25
444 Georgia 12536 T 26 25
445 Georgia 12537 A 26 25
446 Georgia 12538 T 26 25
447 Georgia 12539 G 26 25
448 Georgia 12540 C 26 25
449 Georgia 12541 A 26 25
450 Georgia 12542 T 26 25
451 Georgia 12543 C 26 25
452 Georgia 12544 A 26 25
453 Georgia 12545 G 26 25
454 Georgia 12546 C 26 25
455 Georgia 12547 A 26 25
456 Georgia 12548 T 26 25
457 Georgia 12549 T 26 25
458 Georgia 12550 G 26 25
459 Georgia 12551 T 26 25
460 Georgia 12552 G 26 25
461 Georgia 12553 G 26 25
462 Georgia 12554 G 26 25
463 Georgia 12555 A 26 25
464 Georgia 12556 A 26 25
465 Georgia 12557 A 26 25
466 Georgia 12558 T 26 25
467 Georgia 12559 C 26 25
468 Georgia 12560 C 26 25
469 Georgia 12561 A 26 25
470 Georgia 12562 A 26 25
471 Georgia 12563 C 26 25
472 Georgia 12564 A 26 25
473 Georgia 12565 G 26 25
474 Georgia 12566 G 26 25
475 Georgia 12567 T 26 25
476 Georgia 12568 T 26 25
477 Georgia 12569 G 26 25
478 Georgia 12570 T 26 25
479 Georgia 12571 A 26 25
480 Georgia 12572 G 26 25
481 Georgia 12573 A 26 25
482 Georgia 12574 T 26 25
483 Georgia 12575 G 26 25
484 Georgia 12576 C 26 25
485 Georgia 12577 A 26 25
486 Georgia 12578 G 26 25
487 Georgia 12579 A 26 25
488 Georgia 12580 T 26 25
489 Georgia 12581 A 26 25
490 Georgia 12582 G 26 25
491 Georgia 12583 T 26 25
492 Georgia 12584 A 26 25
493 Georgia 12585 A 26 25
494 Georgia 12586 A 26 25
495 Georgia 12587 A 26 25
496 Georgia 12588 T 26 25
497 Georgia 12589 T 26 25
498 Georgia 12590 G 26 25
499 Georgia 12591 T 26 25
500 Georgia 12592 T 26 25
501 Georgia 12593 C 26 25
502 Georgia 12594 A 26 25
503 Georgia 12595 A 26 25
504 Georgia 12596 C 26 25
505 Georgia 12597 T 26 25
506 Georgia 12598 T 26 25
507 Georgia 12599 A 26 25
508 Georgia 12600 G 26 25
509 Georgia 12601 T 26 25
510 Georgia 12602 G 26 25
511 Georgia 12603 A 26 25
512 Georgia 12604 A 26 25
513 Georgia 12605 A 26 25
514 Georgia 12606 T 26 25
515 Georgia 12607 T 26 25
516 Georgia 12608 A 26 25
517 Georgia 12609 G 26 25
518 Georgia 12610 T 26 25
519 Georgia 12611 A 26 25
520 Georgia 12612 T 26 25
521 Georgia 12613 G 26 25
522 Georgia 12614 G 26 25
523 Georgia 12615 A 26 25
524 Georgia 12616 C 26 25
525 Georgia 12617 A 26 25
526 Georgia 12618 A 26 25
527 Georgia 12619 T 26 25
528 Georgia 12620 T 26 25
529 Georgia 12621 C 26 25
530 Georgia 12622 A 26 25
531 Georgia 12623 C 26 25
532 Georgia 12624 C 26 25
533 Georgia 12625 T 26 25
534 Georgia 12626 A 26 25
535 Georgia 12627 A 26 25
536 Georgia 12628 T 26 25
537 Georgia 12629 T 26 25
538 Georgia 12630 T 26 25
539 Georgia 12631 A 26 25
540 Georgia 12632 G 26 25
541 Georgia 12633 C 26 25
542 Georgia 12634 A 26 25
543 Georgia 12635 T 26 25
544 Georgia 12636 G 26 25
545 Georgia 12637 G 26 25
546 Georgia 12638 C 26 25
547 Georgia 12639 C 26 25
548 Georgia 12640 T 26 25
549 Georgia 12641 C 26 25
550 Georgia 12642 T 26 25
551 Georgia 12643 T 26 25
552 Georgia 12644 A 26 25
553 Georgia 12645 T 26 25
554 Georgia 12646 T 26 25
555 Georgia 12647 G 26 25
556 Georgia 12648 T 26 25
557 Georgia 12649 A 26 25
558 Georgia 12650 A 26 25
559 Georgia 12651 C 26 25
560 Georgia 12652 A 26 25
561 Georgia 12653 G 26 25
562 Georgia 12654 C 26 25
563 Georgia 12655 T 26 25
564 Georgia 12656 T 26 25
565 Georgia 12657 T 26 25
566 Georgia 12658 A 26 25
567 Georgia 12659 A 26 25
568 Georgia 12660 G 26 25
569 Georgia 12661 G 26 25
570 Georgia 12662 G 26 25
571 Georgia 12663 C 26 25
572 Georgia 12664 C 26 25
573 Georgia 12665 A 26 25
574 Georgia 12666 A 26 25
575 Georgia 12667 T 26 25
576 Georgia 12668 T 26 25
577 Georgia 12669 C 26 25
578 Georgia 12670 T 26 25
579 Georgia 12671 G 26 25
580 Georgia 12672 C 26 25
581 Georgia 12673 T 26 25
582 Georgia 12674 G 26 25
583 Georgia 12675 T 26 25
584 Georgia 12676 C 26 25
585 Georgia 12677 A 26 25
586 Georgia 12678 A 26 25
587 Georgia 12679 A 26 25
588 Georgia 12680 T 26 25
589 Georgia 12681 T 26 25
590 Georgia 12682 A 26 25
591 Georgia 12683 C 26 25
592 Georgia 12684 A 26 25
593 Georgia 12685 G 26 25