National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84 1                                    
C   6                                      
D   39                                      
E   27                                      
F   15                                      
G   9                                      
I   30                                      
K   45                                      
L   54                                      
M   27                                      
N   39                                      
P   18                       1              
Q   33                                      
R   21                                      
S   45                                      
T   39             1                        
V   39                                      
W   6                                      
Y   18                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Gambia 12092 G 404 404
1 Gambia 12093 C 404 404
2 Gambia 12094 T 404 404
3 Gambia 12095 A 404 404
4 Gambia 12096 T 404 404
5 Gambia 12097 A 404 404
6 Gambia 12098 G 404 404
7 Gambia 12099 C 404 404
8 Gambia 12100 C 404 404
9 Gambia 12101 T 404 404
10 Gambia 12102 C 404 404
11 Gambia 12103 A 404 404
12 Gambia 12104 G 404 404
13 Gambia 12105 A 404 404
14 Gambia 12106 G 404 404
15 Gambia 12107 T 404 404
16 Gambia 12108 T 404 404
17 Gambia 12109 T 404 404
18 Gambia 12110 A 404 404
19 Gambia 12111 G 404 404
20 Gambia 12112 T 404 404
21 Gambia 12113 T 404 404
22 Gambia 12114 C 404 404
23 Gambia 12115 C 404 404
24 Gambia 12116 C 404 404
25 Gambia 12117 T 404 404
26 Gambia 12118 T 404 404
27 Gambia 12119 C 404 404
28 Gambia 12120 C 404 404
29 Gambia 12121 A 404 404
30 Gambia 12122 T 404 404
31 Gambia 12123 C 404 404
32 Gambia 12124 A 404 404
33 Gambia 12125 T 404 404
34 Gambia 12126 A 404 404
35 Gambia 12127 T 404 404
36 Gambia 12128 G 404 404
37 Gambia 12129 C 404 404
38 Gambia 12130 A 404 404
39 Gambia 12131 G 404 404
40 Gambia 12132 C 404 404
41 Gambia 12133 T 404 404
42 Gambia 12134 T 427 427
43 Gambia 12135 T 427 427
44 Gambia 12136 T 427 427
45 Gambia 12137 G 427 427
46 Gambia 12138 C 427 427
47 Gambia 12139 T 427 427
48 Gambia 12140 A 427 427
49 Gambia 12141 C 427 427
50 Gambia 12142 T 427 427
51 Gambia 12143 G 427 427
52 Gambia 12144 C 427 427
53 Gambia 12145 T 427 427
54 Gambia 12146 C 427 427
55 Gambia 12147 A 427 427
56 Gambia 12148 A 427 427
57 Gambia 12149 G 427 427
58 Gambia 12150 A 427 427
59 Gambia 12151 A 427 427
60 Gambia 12152 G 427 427
61 Gambia 12153 C 427 427
62 Gambia 12154 T 427 427
63 Gambia 12155 T 427 427
64 Gambia 12156 A 427 427
65 Gambia 12157 T 427 427
66 Gambia 12158 G 427 427
67 Gambia 12159 A 427 427
68 Gambia 12160 G 427 427
69 Gambia 12161 C 427 427
70 Gambia 12162 A 427 427
71 Gambia 12163 G 427 427
72 Gambia 12164 G 427 427
73 Gambia 12165 C 427 427
74 Gambia 12166 T 427 427
75 Gambia 12167 G 427 427
76 Gambia 12168 T 427 427
77 Gambia 12169 T 427 427
78 Gambia 12170 G 427 427
79 Gambia 12171 C 427 427
80 Gambia 12172 T 427 427
81 Gambia 12173 A 427 427
82 Gambia 12174 A 427 427
83 Gambia 12175 T 427 427
84 Gambia 12176 G 427 427
85 Gambia 12177 G 427 427
86 Gambia 12178 T 427 427
87 Gambia 12179 G 427 427
88 Gambia 12180 A 427 427
89 Gambia 12181 T 427 427
90 Gambia 12182 T 427 427
91 Gambia 12183 C 427 427
92 Gambia 12184 T 427 427
93 Gambia 12185 G 427 427
94 Gambia 12186 A 427 427
95 Gambia 12187 A 427 427
96 Gambia 12188 G 427 427
97 Gambia 12189 T 427 427
98 Gambia 12190 T 427 427
99 Gambia 12191 G 427 427
100 Gambia 12192 T 427 427
101 Gambia 12193 T 427 427
102 Gambia 12194 C 427 427
103 Gambia 12195 T 427 427
104 Gambia 12196 T 427 427
105 Gambia 12197 A 427 427
106 Gambia 12198 A 427 427
107 Gambia 12199 A 427 427
108 Gambia 12200 A 427 427
109 Gambia 12201 A 427 427
110 Gambia 12202 G 427 427
111 Gambia 12203 T 427 427
112 Gambia 12204 T 427 427
113 Gambia 12205 G 427 427
114 Gambia 12206 A 427 427
115 Gambia 12207 A 427 427
116 Gambia 12208 G 427 427
117 Gambia 12209 A 427 427
118 Gambia 12210 A 427 427
119 Gambia 12211 G 427 427
120 Gambia 12212 T 427 427
121 Gambia 12213 C 427 427
122 Gambia 12214 T 427 427
123 Gambia 12215 T 427 427
124 Gambia 12216 T 427 427
125 Gambia 12217 G 427 427
126 Gambia 12218 A 427 427
127 Gambia 12219 A 427 427
128 Gambia 12220 T 427 427
129 Gambia 12221 G 427 427
130 Gambia 12222 T 427 427
131 Gambia 12223 G 427 427
132 Gambia 12224 G 427 427
133 Gambia 12225 C 427 427
134 Gambia 12226 T 427 427
135 Gambia 12227 A 427 427
136 Gambia 12228 A 427 427
137 Gambia 12229 A 427 427
138 Gambia 12230 T 427 427
139 Gambia 12231 C 427 427
140 Gambia 12232 T 427 427
141 Gambia 12233 G 427 427
142 Gambia 12234 A 427 427
143 Gambia 12235 A 427 427
144 Gambia 12236 T 427 427
145 Gambia 12237 T 427 427
146 Gambia 12238 T 427 427
147 Gambia 12239 G 427 427
148 Gambia 12240 A 427 427
149 Gambia 12241 C 427 427
150 Gambia 12242 C 427 427
151 Gambia 12243 G 427 427
152 Gambia 12244 T 427 427
153 Gambia 12245 G 427 427
154 Gambia 12246 A 427 427
155 Gambia 12247 T 427 427
156 Gambia 12248 G 427 427
157 Gambia 12249 C 427 427
158 Gambia 12250 A 427 427
159 Gambia 12251 G 427 427
160 Gambia 12252 C 427 427
161 Gambia 12253 C 427 427
162 Gambia 12254 A 427 427
163 Gambia 12255 T 427 427
164 Gambia 12256 G 427 426
165 Gambia 12257 C 427 427
166 Gambia 12258 A 427 427
167 Gambia 12259 A 427 427
168 Gambia 12260 C 427 427
169 Gambia 12261 G 427 427
170 Gambia 12262 T 427 427
171 Gambia 12263 A 427 427
172 Gambia 12264 A 427 427
173 Gambia 12265 G 427 427
174 Gambia 12266 T 427 427
175 Gambia 12267 T 427 427
176 Gambia 12268 G 427 427
177 Gambia 12269 G 427 427
178 Gambia 12270 A 427 427
179 Gambia 12271 A 427 427
180 Gambia 12272 A 427 427
181 Gambia 12273 A 427 427
182 Gambia 12274 G 427 427
183 Gambia 12275 A 427 427
184 Gambia 12276 T 427 427
185 Gambia 12277 G 427 427
186 Gambia 12278 G 427 427
187 Gambia 12279 C 427 426
188 Gambia 12280 T 427 427
189 Gambia 12281 G 427 427
190 Gambia 12282 A 427 427
191 Gambia 12283 T 427 427
192 Gambia 12284 C 427 427
193 Gambia 12285 A 427 427
194 Gambia 12286 A 427 427
195 Gambia 12287 G 427 427
196 Gambia 12288 C 427 427
197 Gambia 12289 T 427 427
198 Gambia 12290 A 427 427
199 Gambia 12291 T 427 427
200 Gambia 12292 G 427 427
201 Gambia 12293 A 427 427
202 Gambia 12294 C 427 427
203 Gambia 12295 C 427 427
204 Gambia 12296 C 427 427
205 Gambia 12297 A 427 427
206 Gambia 12298 A 427 427
207 Gambia 12299 A 427 427
208 Gambia 12300 T 427 427
209 Gambia 12301 G 427 427
210 Gambia 12302 T 427 427
211 Gambia 12303 A 427 427
212 Gambia 12304 T 427 427
213 Gambia 12305 A 427 427
214 Gambia 12306 A 427 427
215 Gambia 12307 A 427 427
216 Gambia 12308 C 427 427
217 Gambia 12309 A 427 427
218 Gambia 12310 G 427 427
219 Gambia 12311 G 427 427
220 Gambia 12312 C 427 427
221 Gambia 12313 T 427 427
222 Gambia 12314 A 427 427
223 Gambia 12315 G 427 427
224 Gambia 12316 A 427 427
225 Gambia 12317 T 427 427
226 Gambia 12318 C 427 427
227 Gambia 12319 T 427 427
228 Gambia 12320 G 427 427
229 Gambia 12321 A 427 427
230 Gambia 12322 G 427 427
231 Gambia 12323 G 427 427
232 Gambia 12324 A 427 427
233 Gambia 12325 C 427 427
234 Gambia 12326 A 427 427
235 Gambia 12327 A 427 427
236 Gambia 12328 G 427 427
237 Gambia 12329 A 427 427
238 Gambia 12330 G 427 427
239 Gambia 12331 G 427 427
240 Gambia 12332 G 427 427
241 Gambia 12333 C 427 427
242 Gambia 12334 A 427 427
243 Gambia 12335 A 427 427
244 Gambia 12336 A 427 427
245 Gambia 12337 A 427 427
246 Gambia 12338 G 427 427
247 Gambia 12339 T 427 427
248 Gambia 12340 T 427 427
249 Gambia 12341 A 427 427
250 Gambia 12342 C 427 427
251 Gambia 12343 T 427 427
252 Gambia 12344 A 427 427
253 Gambia 12345 G 427 427
254 Gambia 12346 T 427 427
255 Gambia 12347 G 427 427
256 Gambia 12348 C 427 427
257 Gambia 12349 T 427 427
258 Gambia 12350 A 427 427
259 Gambia 12351 T 427 427
260 Gambia 12352 G 427 427
261 Gambia 12353 C 427 427
262 Gambia 12354 A 427 427
263 Gambia 12355 G 427 427
264 Gambia 12356 A 427 427
265 Gambia 12357 C 427 427
266 Gambia 12358 A 427 427
267 Gambia 12359 A 427 427
268 Gambia 12360 T 427 427
269 Gambia 12361 G 427 427
270 Gambia 12362 C 427 427
271 Gambia 12363 T 427 427
272 Gambia 12364 T 427 427
273 Gambia 12365 T 427 427
274 Gambia 12366 T 427 427
275 Gambia 12367 C 427 427
276 Gambia 12368 A 427 427
277 Gambia 12369 C 427 427
278 Gambia 12370 T 427 427
279 Gambia 12371 A 427 427
280 Gambia 12372 T 427 427
281 Gambia 12373 G 427 427
282 Gambia 12374 C 427 427
283 Gambia 12375 T 427 427
284 Gambia 12376 T 427 427
285 Gambia 12377 A 427 427
286 Gambia 12378 G 427 427
287 Gambia 12379 A 427 427
288 Gambia 12380 A 427 427
289 Gambia 12381 A 427 427
290 Gambia 12382 G 427 427
291 Gambia 12383 T 427 427
292 Gambia 12384 T 427 427
293 Gambia 12385 G 427 427
294 Gambia 12386 G 427 427
295 Gambia 12387 A 427 427
296 Gambia 12388 T 427 427
297 Gambia 12389 A 427 427
298 Gambia 12390 A 427 427
299 Gambia 12391 T 427 427
300 Gambia 12392 G 427 427
301 Gambia 12393 A 427 427
302 Gambia 12394 T 427 427
303 Gambia 12395 G 427 427
304 Gambia 12396 C 427 427
305 Gambia 12397 A 427 427
306 Gambia 12398 C 427 427
307 Gambia 12399 T 427 427
308 Gambia 12400 C 427 427
309 Gambia 12401 A 427 427
310 Gambia 12402 A 427 427
311 Gambia 12403 C 427 427
312 Gambia 12404 A 427 427
313 Gambia 12405 A 427 427
314 Gambia 12406 C 427 427
315 Gambia 12407 A 427 427
316 Gambia 12408 T 427 427
317 Gambia 12409 T 427 427
318 Gambia 12410 A 427 427
319 Gambia 12411 T 427 427
320 Gambia 12412 C 427 427
321 Gambia 12413 A 427 427
322 Gambia 12414 A 427 427
323 Gambia 12415 C 427 427
324 Gambia 12416 A 427 427
325 Gambia 12417 A 427 427
326 Gambia 12418 T 427 427
327 Gambia 12419 G 427 427
328 Gambia 12420 C 427 427
329 Gambia 12421 A 427 427
330 Gambia 12422 A 427 427
331 Gambia 12423 G 427 427
332 Gambia 12424 A 427 427
333 Gambia 12425 G 427 427
334 Gambia 12426 A 427 427
335 Gambia 12427 T 427 427
336 Gambia 12428 G 427 427
337 Gambia 12429 G 427 427
338 Gambia 12430 T 427 427
339 Gambia 12431 T 427 427
340 Gambia 12432 G 427 427
341 Gambia 12433 T 427 427
342 Gambia 12434 G 427 427
343 Gambia 12435 T 427 427
344 Gambia 12436 T 427 427
345 Gambia 12437 C 427 427
346 Gambia 12438 C 427 427
347 Gambia 12439 C T 427 426 Pro4058Pro
348 Gambia 12440 T 427 427
349 Gambia 12441 T 427 427
350 Gambia 12442 G 427 427
351 Gambia 12443 A 427 427
352 Gambia 12444 A 427 427
353 Gambia 12445 C 427 427
354 Gambia 12446 A 427 427
355 Gambia 12447 T 427 427
356 Gambia 12448 A 427 427
357 Gambia 12449 A 427 427
358 Gambia 12450 T 427 427
359 Gambia 12451 A 427 427
360 Gambia 12452 C 427 427
361 Gambia 12453 C 427 427
362 Gambia 12454 T 427 427
363 Gambia 12455 C 427 427
364 Gambia 12456 T 427 427
365 Gambia 12457 T 427 427
366 Gambia 12458 A 427 427
367 Gambia 12459 C 427 426
368 Gambia 12460 A 427 427
369 Gambia 12461 A 427 427
370 Gambia 12462 C 427 427
371 Gambia 12463 A 427 427
372 Gambia 12464 G 427 427
373 Gambia 12465 C 427 427
374 Gambia 12466 A 390 390
375 Gambia 12467 G 390 390
376 Gambia 12468 C 390 390
377 Gambia 12469 C T 390 357 Ala4068Ala
378 Gambia 12470 A 390 390
379 Gambia 12471 A 390 390
380 Gambia 12472 A 390 390
381 Gambia 12473 C 390 390
382 Gambia 12474 T 390 390
383 Gambia 12475 A 390 390
384 Gambia 12476 A 390 390
385 Gambia 12477 T 390 390
386 Gambia 12478 G 390 390
387 Gambia 12479 G 390 390
388 Gambia 12480 T 390 390
389 Gambia 12481 T 390 390
390 Gambia 12482 G 390 390
391 Gambia 12483 T 390 390
392 Gambia 12484 C 390 390
393 Gambia 12485 A 390 390
394 Gambia 12486 T 390 390
395 Gambia 12487 A 390 390
396 Gambia 12488 C 390 390
397 Gambia 12489 C 390 390
398 Gambia 12490 A 390 390
399 Gambia 12491 G 390 390
400 Gambia 12492 A 390 390
401 Gambia 12493 C 390 390
402 Gambia 12494 T 390 390
403 Gambia 12495 A 390 390
404 Gambia 12496 T 390 390
405 Gambia 12497 A 390 390
406 Gambia 12498 A 390 390
407 Gambia 12499 C 390 390
408 Gambia 12500 A 390 390
409 Gambia 12501 C 390 390
410 Gambia 12502 A 390 390
411 Gambia 12503 T 390 390
412 Gambia 12504 A 390 390
413 Gambia 12505 T 390 390
414 Gambia 12506 A 390 390
415 Gambia 12507 A 390 390
416 Gambia 12508 A 390 390
417 Gambia 12509 A 390 390
418 Gambia 12510 A 390 390
419 Gambia 12511 T 390 390
420 Gambia 12512 A 390 390
421 Gambia 12513 C 390 390
422 Gambia 12514 G 390 390
423 Gambia 12515 T 390 390
424 Gambia 12516 G 390 390
425 Gambia 12517 T 390 390
426 Gambia 12518 G 390 390
427 Gambia 12519 A 390 390
428 Gambia 12520 T 390 390
429 Gambia 12521 G 390 390
430 Gambia 12522 G 390 390
431 Gambia 12523 T 390 390
432 Gambia 12524 A 390 390
433 Gambia 12525 C 390 390
434 Gambia 12526 A 390 390
435 Gambia 12527 A 390 390
436 Gambia 12528 C 390 390
437 Gambia 12529 A 390 390
438 Gambia 12530 T 390 390
439 Gambia 12531 T 390 390
440 Gambia 12532 T 390 390
441 Gambia 12533 A 390 390
442 Gambia 12534 C T 390 379 Thr4090Ile
443 Gambia 12535 T 390 390
444 Gambia 12536 T 390 390
445 Gambia 12537 A 390 390
446 Gambia 12538 T 390 390
447 Gambia 12539 G 390 390
448 Gambia 12540 C 390 390
449 Gambia 12541 A 390 390
450 Gambia 12542 T 390 390
451 Gambia 12543 C 390 390
452 Gambia 12544 A 390 390
453 Gambia 12545 G 390 390
454 Gambia 12546 C 390 390
455 Gambia 12547 A 390 390
456 Gambia 12548 T 390 390
457 Gambia 12549 T 390 390
458 Gambia 12550 G 390 390
459 Gambia 12551 T 390 390
460 Gambia 12552 G 390 390
461 Gambia 12553 G 390 390
462 Gambia 12554 G 390 390
463 Gambia 12555 A 390 390
464 Gambia 12556 A 390 390
465 Gambia 12557 A 390 390
466 Gambia 12558 T 390 390
467 Gambia 12559 C 390 390
468 Gambia 12560 C 390 390
469 Gambia 12561 A 390 390
470 Gambia 12562 A 390 390
471 Gambia 12563 C 390 390
472 Gambia 12564 A 390 390
473 Gambia 12565 G 390 390
474 Gambia 12566 G 390 390
475 Gambia 12567 T 390 390
476 Gambia 12568 T 390 390
477 Gambia 12569 G 390 390
478 Gambia 12570 T 390 390
479 Gambia 12571 A 390 390
480 Gambia 12572 G 390 390
481 Gambia 12573 A 390 390
482 Gambia 12574 T 390 390
483 Gambia 12575 G 390 390
484 Gambia 12576 C 390 390
485 Gambia 12577 A 390 390
486 Gambia 12578 G 390 390
487 Gambia 12579 A 390 390
488 Gambia 12580 T 390 390
489 Gambia 12581 A 390 390
490 Gambia 12582 G 390 390
491 Gambia 12583 T 390 390
492 Gambia 12584 A 390 390
493 Gambia 12585 A 390 390
494 Gambia 12586 A 390 390
495 Gambia 12587 A 390 390
496 Gambia 12588 T 390 390
497 Gambia 12589 T 390 390
498 Gambia 12590 G 390 390
499 Gambia 12591 T 390 390
500 Gambia 12592 T 390 390
501 Gambia 12593 C 390 390
502 Gambia 12594 A 390 390
503 Gambia 12595 A 390 390
504 Gambia 12596 C 390 390
505 Gambia 12597 T 390 390
506 Gambia 12598 T 390 390
507 Gambia 12599 A 390 390
508 Gambia 12600 G 390 390
509 Gambia 12601 T 390 390
510 Gambia 12602 G 390 390
511 Gambia 12603 A 390 390
512 Gambia 12604 A 390 390
513 Gambia 12605 A 390 390
514 Gambia 12606 T 390 390
515 Gambia 12607 T 390 390
516 Gambia 12608 A 390 390
517 Gambia 12609 G 390 390
518 Gambia 12610 T 390 390
519 Gambia 12611 A 390 390
520 Gambia 12612 T 390 390
521 Gambia 12613 G 390 390
522 Gambia 12614 G 390 390
523 Gambia 12615 A 390 390
524 Gambia 12616 C 390 390
525 Gambia 12617 A 390 390
526 Gambia 12618 A 390 390
527 Gambia 12619 T 390 390
528 Gambia 12620 T 390 390
529 Gambia 12621 C 390 390
530 Gambia 12622 A 390 390
531 Gambia 12623 C 390 390
532 Gambia 12624 C 390 390
533 Gambia 12625 T 390 390
534 Gambia 12626 A 390 390
535 Gambia 12627 A 390 390
536 Gambia 12628 T 390 390
537 Gambia 12629 T 390 390
538 Gambia 12630 T 390 390
539 Gambia 12631 A 390 390
540 Gambia 12632 G 390 390
541 Gambia 12633 C 390 390
542 Gambia 12634 A 390 390
543 Gambia 12635 T 390 390
544 Gambia 12636 G 390 390
545 Gambia 12637 G 390 390
546 Gambia 12638 C 390 390
547 Gambia 12639 C 390 390
548 Gambia 12640 T 390 390
549 Gambia 12641 C 390 390
550 Gambia 12642 T 390 390
551 Gambia 12643 T 390 390
552 Gambia 12644 A 390 390
553 Gambia 12645 T 390 390
554 Gambia 12646 T 390 390
555 Gambia 12647 G 390 390
556 Gambia 12648 T 390 390
557 Gambia 12649 A 390 390
558 Gambia 12650 A 390 390
559 Gambia 12651 C 390 390
560 Gambia 12652 A 390 390
561 Gambia 12653 G 390 390
562 Gambia 12654 C 390 390
563 Gambia 12655 T 390 390
564 Gambia 12656 T 390 390
565 Gambia 12657 T 390 390
566 Gambia 12658 A 390 390
567 Gambia 12659 A 390 390
568 Gambia 12660 G 390 390
569 Gambia 12661 G 390 390
570 Gambia 12662 G 390 390
571 Gambia 12663 C 390 390
572 Gambia 12664 C 390 390
573 Gambia 12665 A 390 390
574 Gambia 12666 A 390 390
575 Gambia 12667 T 390 390
576 Gambia 12668 T 390 390
577 Gambia 12669 C 390 390
578 Gambia 12670 T 390 390
579 Gambia 12671 G 390 390
580 Gambia 12672 C 390 390
581 Gambia 12673 T 390 390
582 Gambia 12674 G 390 390
583 Gambia 12675 T 390 390
584 Gambia 12676 C 390 390
585 Gambia 12677 A 390 390
586 Gambia 12678 A 390 390
587 Gambia 12679 A 390 390
588 Gambia 12680 T 390 390
589 Gambia 12681 T 390 390
590 Gambia 12682 A 390 390
591 Gambia 12683 C 390 390
592 Gambia 12684 A 390 390
593 Gambia 12685 G 390 390