National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84                                      
C   6                                      
D   39                                      
E   27                                      
F   15                                      
G   9                                      
I   30                                      
K   45                                      
L   54                                      
M   27                                      
N   39                                      
P   18                                      
Q   33                                      
R   21                                      
S   45                                      
T   39                                      
V   39                                      
W   6                                      
Y   18                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Gabon 12092 G 4 4
1 Gabon 12093 C 4 4
2 Gabon 12094 T 4 4
3 Gabon 12095 A 4 4
4 Gabon 12096 T 4 4
5 Gabon 12097 A 4 4
6 Gabon 12098 G 4 4
7 Gabon 12099 C 4 4
8 Gabon 12100 C 4 4
9 Gabon 12101 T 4 4
10 Gabon 12102 C 4 4
11 Gabon 12103 A 4 4
12 Gabon 12104 G 4 4
13 Gabon 12105 A 4 4
14 Gabon 12106 G 4 4
15 Gabon 12107 T 4 4
16 Gabon 12108 T 4 4
17 Gabon 12109 T 4 4
18 Gabon 12110 A 4 4
19 Gabon 12111 G 4 4
20 Gabon 12112 T 4 4
21 Gabon 12113 T 4 4
22 Gabon 12114 C 4 4
23 Gabon 12115 C 4 4
24 Gabon 12116 C 4 4
25 Gabon 12117 T 4 4
26 Gabon 12118 T 4 4
27 Gabon 12119 C 4 4
28 Gabon 12120 C 4 4
29 Gabon 12121 A 4 4
30 Gabon 12122 T 4 4
31 Gabon 12123 C 4 4
32 Gabon 12124 A 4 4
33 Gabon 12125 T 4 4
34 Gabon 12126 A 4 4
35 Gabon 12127 T 4 4
36 Gabon 12128 G 4 4
37 Gabon 12129 C 4 4
38 Gabon 12130 A 4 4
39 Gabon 12131 G 4 4
40 Gabon 12132 C 4 4
41 Gabon 12133 T 4 4
42 Gabon 12134 T 4 4
43 Gabon 12135 T 4 4
44 Gabon 12136 T 4 4
45 Gabon 12137 G 4 4
46 Gabon 12138 C 4 4
47 Gabon 12139 T 4 4
48 Gabon 12140 A 4 4
49 Gabon 12141 C 4 4
50 Gabon 12142 T 4 4
51 Gabon 12143 G 4 4
52 Gabon 12144 C 4 4
53 Gabon 12145 T 4 4
54 Gabon 12146 C 4 4
55 Gabon 12147 A 4 4
56 Gabon 12148 A 4 4
57 Gabon 12149 G 4 4
58 Gabon 12150 A 4 4
59 Gabon 12151 A 4 4
60 Gabon 12152 G 4 4
61 Gabon 12153 C 4 4
62 Gabon 12154 T 4 4
63 Gabon 12155 T 4 4
64 Gabon 12156 A 4 4
65 Gabon 12157 T 4 4
66 Gabon 12158 G 4 4
67 Gabon 12159 A 4 4
68 Gabon 12160 G 4 4
69 Gabon 12161 C 4 4
70 Gabon 12162 A 4 4
71 Gabon 12163 G 4 4
72 Gabon 12164 G 4 4
73 Gabon 12165 C 4 4
74 Gabon 12166 T 4 4
75 Gabon 12167 G 4 4
76 Gabon 12168 T 4 4
77 Gabon 12169 T 4 4
78 Gabon 12170 G 4 4
79 Gabon 12171 C 4 4
80 Gabon 12172 T 4 4
81 Gabon 12173 A 4 4
82 Gabon 12174 A 4 4
83 Gabon 12175 T 4 4
84 Gabon 12176 G 4 4
85 Gabon 12177 G 4 4
86 Gabon 12178 T 4 4
87 Gabon 12179 G 4 4
88 Gabon 12180 A 4 4
89 Gabon 12181 T 4 4
90 Gabon 12182 T 4 4
91 Gabon 12183 C 4 4
92 Gabon 12184 T 4 4
93 Gabon 12185 G 4 4
94 Gabon 12186 A 4 4
95 Gabon 12187 A 4 4
96 Gabon 12188 G 4 4
97 Gabon 12189 T 4 4
98 Gabon 12190 T 4 4
99 Gabon 12191 G 4 4
100 Gabon 12192 T 4 4
101 Gabon 12193 T 4 4
102 Gabon 12194 C 4 4
103 Gabon 12195 T 4 4
104 Gabon 12196 T 4 4
105 Gabon 12197 A 4 4
106 Gabon 12198 A 4 4
107 Gabon 12199 A 4 4
108 Gabon 12200 A 4 4
109 Gabon 12201 A 4 4
110 Gabon 12202 G 4 4
111 Gabon 12203 T 4 4
112 Gabon 12204 T 4 4
113 Gabon 12205 G 4 4
114 Gabon 12206 A 4 4
115 Gabon 12207 A 4 4
116 Gabon 12208 G 4 4
117 Gabon 12209 A 4 4
118 Gabon 12210 A 4 4
119 Gabon 12211 G 4 4
120 Gabon 12212 T 4 4
121 Gabon 12213 C 4 4
122 Gabon 12214 T 4 4
123 Gabon 12215 T 4 4
124 Gabon 12216 T 4 4
125 Gabon 12217 G 4 4
126 Gabon 12218 A 4 4
127 Gabon 12219 A 4 4
128 Gabon 12220 T 4 4
129 Gabon 12221 G 4 4
130 Gabon 12222 T 4 4
131 Gabon 12223 G 4 4
132 Gabon 12224 G 4 4
133 Gabon 12225 C 4 4
134 Gabon 12226 T 4 4
135 Gabon 12227 A 4 4
136 Gabon 12228 A 4 4
137 Gabon 12229 A 4 4
138 Gabon 12230 T 4 4
139 Gabon 12231 C 4 4
140 Gabon 12232 T 4 4
141 Gabon 12233 G 4 4
142 Gabon 12234 A 4 4
143 Gabon 12235 A 4 4
144 Gabon 12236 T 4 4
145 Gabon 12237 T 4 4
146 Gabon 12238 T 4 4
147 Gabon 12239 G 4 4
148 Gabon 12240 A 4 4
149 Gabon 12241 C 4 4
150 Gabon 12242 C 4 4
151 Gabon 12243 G 4 4
152 Gabon 12244 T 4 4
153 Gabon 12245 G 4 4
154 Gabon 12246 A 4 4
155 Gabon 12247 T 4 4
156 Gabon 12248 G 4 4
157 Gabon 12249 C 4 4
158 Gabon 12250 A 4 4
159 Gabon 12251 G 4 4
160 Gabon 12252 C 4 4
161 Gabon 12253 C 4 4
162 Gabon 12254 A 4 4
163 Gabon 12255 T 4 4
164 Gabon 12256 G 4 4
165 Gabon 12257 C 4 4
166 Gabon 12258 A 4 4
167 Gabon 12259 A 4 4
168 Gabon 12260 C 4 4
169 Gabon 12261 G 4 4
170 Gabon 12262 T 4 4
171 Gabon 12263 A 4 4
172 Gabon 12264 A 4 4
173 Gabon 12265 G 4 4
174 Gabon 12266 T 4 4
175 Gabon 12267 T 4 4
176 Gabon 12268 G 4 4
177 Gabon 12269 G 4 4
178 Gabon 12270 A 4 4
179 Gabon 12271 A 4 4
180 Gabon 12272 A 4 4
181 Gabon 12273 A 4 4
182 Gabon 12274 G 4 4
183 Gabon 12275 A 4 4
184 Gabon 12276 T 4 4
185 Gabon 12277 G 4 4
186 Gabon 12278 G 4 4
187 Gabon 12279 C 4 4
188 Gabon 12280 T 4 4
189 Gabon 12281 G 4 4
190 Gabon 12282 A 4 4
191 Gabon 12283 T 4 4
192 Gabon 12284 C 4 4
193 Gabon 12285 A 4 4
194 Gabon 12286 A 4 4
195 Gabon 12287 G 4 4
196 Gabon 12288 C 4 4
197 Gabon 12289 T 4 4
198 Gabon 12290 A 4 4
199 Gabon 12291 T 4 4
200 Gabon 12292 G 4 4
201 Gabon 12293 A 4 4
202 Gabon 12294 C 4 4
203 Gabon 12295 C 4 4
204 Gabon 12296 C 4 4
205 Gabon 12297 A 4 4
206 Gabon 12298 A 4 4
207 Gabon 12299 A 4 4
208 Gabon 12300 T 4 4
209 Gabon 12301 G 4 4
210 Gabon 12302 T 4 4
211 Gabon 12303 A 4 4
212 Gabon 12304 T 4 4
213 Gabon 12305 A 4 4
214 Gabon 12306 A 4 4
215 Gabon 12307 A 4 4
216 Gabon 12308 C 4 4
217 Gabon 12309 A 4 4
218 Gabon 12310 G 4 4
219 Gabon 12311 G 4 4
220 Gabon 12312 C 4 4
221 Gabon 12313 T 4 4
222 Gabon 12314 A 4 4
223 Gabon 12315 G 4 4
224 Gabon 12316 A 4 4
225 Gabon 12317 T 4 4
226 Gabon 12318 C 4 4
227 Gabon 12319 T 4 4
228 Gabon 12320 G 4 4
229 Gabon 12321 A 4 4
230 Gabon 12322 G 4 4
231 Gabon 12323 G 4 4
232 Gabon 12324 A 4 4
233 Gabon 12325 C 4 4
234 Gabon 12326 A 4 4
235 Gabon 12327 A 4 4
236 Gabon 12328 G 4 4
237 Gabon 12329 A 4 4
238 Gabon 12330 G 4 4
239 Gabon 12331 G 4 4
240 Gabon 12332 G 4 4
241 Gabon 12333 C 4 4
242 Gabon 12334 A 4 4
243 Gabon 12335 A 4 4
244 Gabon 12336 A 4 4
245 Gabon 12337 A 4 4
246 Gabon 12338 G 4 4
247 Gabon 12339 T 4 4
248 Gabon 12340 T 4 4
249 Gabon 12341 A 4 4
250 Gabon 12342 C 4 4
251 Gabon 12343 T 4 4
252 Gabon 12344 A 4 4
253 Gabon 12345 G 4 4
254 Gabon 12346 T 4 4
255 Gabon 12347 G 4 4
256 Gabon 12348 C 4 4
257 Gabon 12349 T 4 4
258 Gabon 12350 A 4 4
259 Gabon 12351 T 4 4
260 Gabon 12352 G 4 4
261 Gabon 12353 C 4 4
262 Gabon 12354 A 4 4
263 Gabon 12355 G 4 4
264 Gabon 12356 A 4 4
265 Gabon 12357 C 4 4
266 Gabon 12358 A 4 4
267 Gabon 12359 A 4 4
268 Gabon 12360 T 4 4
269 Gabon 12361 G 4 4
270 Gabon 12362 C 4 4
271 Gabon 12363 T 4 4
272 Gabon 12364 T 4 4
273 Gabon 12365 T 4 4
274 Gabon 12366 T 4 4
275 Gabon 12367 C 4 4
276 Gabon 12368 A 4 4
277 Gabon 12369 C 4 4
278 Gabon 12370 T 4 4
279 Gabon 12371 A 4 4
280 Gabon 12372 T 4 4
281 Gabon 12373 G 4 4
282 Gabon 12374 C 4 4
283 Gabon 12375 T 4 4
284 Gabon 12376 T 4 4
285 Gabon 12377 A 4 4
286 Gabon 12378 G 4 4
287 Gabon 12379 A 4 4
288 Gabon 12380 A 4 4
289 Gabon 12381 A 4 4
290 Gabon 12382 G 4 4
291 Gabon 12383 T 4 4
292 Gabon 12384 T 4 4
293 Gabon 12385 G 4 4
294 Gabon 12386 G 4 4
295 Gabon 12387 A 4 4
296 Gabon 12388 T 4 4
297 Gabon 12389 A 4 4
298 Gabon 12390 A 4 4
299 Gabon 12391 T 4 4
300 Gabon 12392 G 4 4
301 Gabon 12393 A 4 4
302 Gabon 12394 T 4 4
303 Gabon 12395 G 4 4
304 Gabon 12396 C 4 4
305 Gabon 12397 A 4 4
306 Gabon 12398 C 4 4
307 Gabon 12399 T 4 4
308 Gabon 12400 C 4 4
309 Gabon 12401 A 4 4
310 Gabon 12402 A 4 4
311 Gabon 12403 C 4 4
312 Gabon 12404 A 4 4
313 Gabon 12405 A 4 4
314 Gabon 12406 C 4 4
315 Gabon 12407 A 4 4
316 Gabon 12408 T 4 4
317 Gabon 12409 T 4 4
318 Gabon 12410 A 4 4
319 Gabon 12411 T 4 4
320 Gabon 12412 C 4 4
321 Gabon 12413 A 4 4
322 Gabon 12414 A 4 4
323 Gabon 12415 C 4 4
324 Gabon 12416 A 4 4
325 Gabon 12417 A 4 4
326 Gabon 12418 T 4 4
327 Gabon 12419 G 4 4
328 Gabon 12420 C 4 4
329 Gabon 12421 A 4 4
330 Gabon 12422 A 4 4
331 Gabon 12423 G 4 4
332 Gabon 12424 A 4 4
333 Gabon 12425 G 4 4
334 Gabon 12426 A 4 4
335 Gabon 12427 T 4 4
336 Gabon 12428 G 4 4
337 Gabon 12429 G 4 4
338 Gabon 12430 T 4 4
339 Gabon 12431 T 4 4
340 Gabon 12432 G 4 4
341 Gabon 12433 T 4 4
342 Gabon 12434 G 4 4
343 Gabon 12435 T 4 4
344 Gabon 12436 T 4 4
345 Gabon 12437 C 4 4
346 Gabon 12438 C 4 4
347 Gabon 12439 C 4 4
348 Gabon 12440 T 4 4
349 Gabon 12441 T 4 4
350 Gabon 12442 G 4 4
351 Gabon 12443 A 4 4
352 Gabon 12444 A 4 4
353 Gabon 12445 C 4 4
354 Gabon 12446 A 4 4
355 Gabon 12447 T 4 4
356 Gabon 12448 A 4 4
357 Gabon 12449 A 4 4
358 Gabon 12450 T 4 4
359 Gabon 12451 A 4 4
360 Gabon 12452 C 4 4
361 Gabon 12453 C 4 4
362 Gabon 12454 T 4 4
363 Gabon 12455 C 4 4
364 Gabon 12456 T 4 4
365 Gabon 12457 T 4 4
366 Gabon 12458 A 4 4
367 Gabon 12459 C 4 4
368 Gabon 12460 A 4 4
369 Gabon 12461 A 4 4
370 Gabon 12462 C 4 4
371 Gabon 12463 A 4 4
372 Gabon 12464 G 4 4
373 Gabon 12465 C 4 4
374 Gabon 12466 A 4 4
375 Gabon 12467 G 4 4
376 Gabon 12468 C 4 4
377 Gabon 12469 C 4 4
378 Gabon 12470 A 4 4
379 Gabon 12471 A 4 4
380 Gabon 12472 A 4 4
381 Gabon 12473 C 4 4
382 Gabon 12474 T 4 4
383 Gabon 12475 A 4 4
384 Gabon 12476 A 4 4
385 Gabon 12477 T 4 4
386 Gabon 12478 G 4 4
387 Gabon 12479 G 4 4
388 Gabon 12480 T 4 4
389 Gabon 12481 T 4 4
390 Gabon 12482 G 4 4
391 Gabon 12483 T 4 4
392 Gabon 12484 C 4 4
393 Gabon 12485 A 4 4
394 Gabon 12486 T 4 4
395 Gabon 12487 A 4 4
396 Gabon 12488 C 4 4
397 Gabon 12489 C 4 4
398 Gabon 12490 A 4 4
399 Gabon 12491 G 4 4
400 Gabon 12492 A 4 4
401 Gabon 12493 C 4 4
402 Gabon 12494 T 4 4
403 Gabon 12495 A 4 4
404 Gabon 12496 T 4 4
405 Gabon 12497 A 4 4
406 Gabon 12498 A 4 4
407 Gabon 12499 C 4 4
408 Gabon 12500 A 4 4
409 Gabon 12501 C 4 4
410 Gabon 12502 A 4 4
411 Gabon 12503 T 4 4
412 Gabon 12504 A 4 4
413 Gabon 12505 T 4 4
414 Gabon 12506 A 4 4
415 Gabon 12507 A 4 4
416 Gabon 12508 A 4 4
417 Gabon 12509 A 4 4
418 Gabon 12510 A 4 4
419 Gabon 12511 T 4 4
420 Gabon 12512 A 4 4
421 Gabon 12513 C 4 4
422 Gabon 12514 G 4 4
423 Gabon 12515 T 4 4
424 Gabon 12516 G 4 4
425 Gabon 12517 T 4 4
426 Gabon 12518 G 4 4
427 Gabon 12519 A 4 4
428 Gabon 12520 T 4 4
429 Gabon 12521 G 4 4
430 Gabon 12522 G 4 4
431 Gabon 12523 T 4 4
432 Gabon 12524 A 4 4
433 Gabon 12525 C 4 4
434 Gabon 12526 A 4 4
435 Gabon 12527 A 4 4
436 Gabon 12528 C 4 4
437 Gabon 12529 A 4 4
438 Gabon 12530 T 4 4
439 Gabon 12531 T 4 4
440 Gabon 12532 T 4 4
441 Gabon 12533 A 4 4
442 Gabon 12534 C 4 4
443 Gabon 12535 T 4 4
444 Gabon 12536 T 4 4
445 Gabon 12537 A 4 4
446 Gabon 12538 T 4 4
447 Gabon 12539 G 4 4
448 Gabon 12540 C 4 4
449 Gabon 12541 A 4 4
450 Gabon 12542 T 4 4
451 Gabon 12543 C 4 4
452 Gabon 12544 A 4 4
453 Gabon 12545 G 4 4
454 Gabon 12546 C 4 4
455 Gabon 12547 A 4 4
456 Gabon 12548 T 4 4
457 Gabon 12549 T 4 4
458 Gabon 12550 G 4 4
459 Gabon 12551 T 4 4
460 Gabon 12552 G 4 4
461 Gabon 12553 G 4 4
462 Gabon 12554 G 4 4
463 Gabon 12555 A 4 4
464 Gabon 12556 A 4 4
465 Gabon 12557 A 4 4
466 Gabon 12558 T 4 4
467 Gabon 12559 C 4 4
468 Gabon 12560 C 4 4
469 Gabon 12561 A 4 4
470 Gabon 12562 A 4 4
471 Gabon 12563 C 4 4
472 Gabon 12564 A 4 4
473 Gabon 12565 G 4 4
474 Gabon 12566 G 4 4
475 Gabon 12567 T 4 4
476 Gabon 12568 T 4 4
477 Gabon 12569 G 4 4
478 Gabon 12570 T 4 4
479 Gabon 12571 A 4 4
480 Gabon 12572 G 4 4
481 Gabon 12573 A 4 4
482 Gabon 12574 T 4 4
483 Gabon 12575 G 4 4
484 Gabon 12576 C 4 4
485 Gabon 12577 A 4 4
486 Gabon 12578 G 4 4
487 Gabon 12579 A 4 4
488 Gabon 12580 T 4 4
489 Gabon 12581 A 4 4
490 Gabon 12582 G 4 4
491 Gabon 12583 T 4 4
492 Gabon 12584 A 4 4
493 Gabon 12585 A 4 4
494 Gabon 12586 A 4 4
495 Gabon 12587 A 4 4
496 Gabon 12588 T 4 4
497 Gabon 12589 T 4 4
498 Gabon 12590 G 4 4
499 Gabon 12591 T 4 4
500 Gabon 12592 T 4 4
501 Gabon 12593 C 4 4
502 Gabon 12594 A 4 4
503 Gabon 12595 A 4 4
504 Gabon 12596 C 4 4
505 Gabon 12597 T 4 4
506 Gabon 12598 T 4 4
507 Gabon 12599 A 4 4
508 Gabon 12600 G 4 4
509 Gabon 12601 T 4 4
510 Gabon 12602 G 4 4
511 Gabon 12603 A 4 4
512 Gabon 12604 A 4 4
513 Gabon 12605 A 4 4
514 Gabon 12606 T 4 4
515 Gabon 12607 T 4 4
516 Gabon 12608 A 4 4
517 Gabon 12609 G 4 4
518 Gabon 12610 T 4 4
519 Gabon 12611 A 4 4
520 Gabon 12612 T 4 4
521 Gabon 12613 G 4 4
522 Gabon 12614 G 4 4
523 Gabon 12615 A 4 4
524 Gabon 12616 C 4 4
525 Gabon 12617 A 4 4
526 Gabon 12618 A 4 4
527 Gabon 12619 T 4 4
528 Gabon 12620 T 4 4
529 Gabon 12621 C 4 4
530 Gabon 12622 A 4 4
531 Gabon 12623 C 4 4
532 Gabon 12624 C 4 4
533 Gabon 12625 T 4 4
534 Gabon 12626 A 4 4
535 Gabon 12627 A 4 4
536 Gabon 12628 T 4 4
537 Gabon 12629 T 4 4
538 Gabon 12630 T 4 4
539 Gabon 12631 A 4 4
540 Gabon 12632 G 4 4
541 Gabon 12633 C 4 4
542 Gabon 12634 A 4 4
543 Gabon 12635 T 4 4
544 Gabon 12636 G 4 4
545 Gabon 12637 G 4 4
546 Gabon 12638 C 4 4
547 Gabon 12639 C 4 4
548 Gabon 12640 T 4 4
549 Gabon 12641 C 4 4
550 Gabon 12642 T 4 4
551 Gabon 12643 T 4 4
552 Gabon 12644 A 4 4
553 Gabon 12645 T 4 4
554 Gabon 12646 T 4 4
555 Gabon 12647 G 4 4
556 Gabon 12648 T 4 4
557 Gabon 12649 A 4 4
558 Gabon 12650 A 4 4
559 Gabon 12651 C 4 4
560 Gabon 12652 A 4 4
561 Gabon 12653 G 4 4
562 Gabon 12654 C 4 4
563 Gabon 12655 T 4 4
564 Gabon 12656 T 4 4
565 Gabon 12657 T 4 4
566 Gabon 12658 A 4 4
567 Gabon 12659 A 4 4
568 Gabon 12660 G 4 4
569 Gabon 12661 G 4 4
570 Gabon 12662 G 4 4
571 Gabon 12663 C 4 4
572 Gabon 12664 C 4 4
573 Gabon 12665 A 4 4
574 Gabon 12666 A 4 4
575 Gabon 12667 T 4 4
576 Gabon 12668 T 4 4
577 Gabon 12669 C 4 4
578 Gabon 12670 T 4 4
579 Gabon 12671 G 4 4
580 Gabon 12672 C 4 4
581 Gabon 12673 T 4 4
582 Gabon 12674 G 4 4
583 Gabon 12675 T 4 4
584 Gabon 12676 C 4 4
585 Gabon 12677 A 4 4
586 Gabon 12678 A 4 4
587 Gabon 12679 A 4 4
588 Gabon 12680 T 4 4
589 Gabon 12681 T 4 4
590 Gabon 12682 A 4 4
591 Gabon 12683 C 4 4
592 Gabon 12684 A 4 4
593 Gabon 12685 G 4 4