National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*                                              
-     593                                        
?                                              
A     84 19                             2        
C     6                                        
D     39     4 1                                
E 1   27       7                                
F     15         1                              
G     9                                        
H                                              
I     30               7                   1    
K     45                 7                      
L     53         8   1 1   21                    
M     27                   1                    
N     39     1                 4       2        
P     18                         6              
Q     33                           8            
R     21                             6 1        
S     45   1     1     1       1     1 9 1      
T     39               1 1     1     1   12      
V     39                   1               11    
W     6                                        
Y     18                                       2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 China 12092 G 766 766
1 China 12093 C 766 766
2 China 12094 T C 766 764 Ala3943Ala
3 China 12095 A 766 766
4 China 12096 T 766 766
5 China 12097 A T 766 760 Ile3944Ile
6 China 12098 G 766 766
7 China 12099 C 766 766
8 China 12100 C T 766 758 Ala3945Ala
9 China 12101 T 767 767
10 China 12102 C 767 767
11 China 12103 A 767 767
12 China 12104 G 767 767
13 China 12105 A 767 767
14 China 12106 G A 767 761 Glu3947Glu
15 China 12107 T 767 767
16 China 12108 T 768 768
17 China 12109 T C 768 767 Phe3948Phe
18 China 12110 A 768 768
19 China 12111 G 768 768
20 China 12112 T 768 768
21 China 12113 T 768 768
22 China 12114 C 768 768
23 China 12115 C T 768 758 Ser3950Ser
24 China 12116 C T 768 762 Leu3951Phe
25 China 12117 T 768 768
26 China 12118 T A,C 768 760 Leu3951Leu-p.Leu3951Leu
27 China 12119 C 768 767
28 China 12120 C 768 767
29 China 12121 A 768 768
30 China 12122 T 768 768
31 China 12123 C 768 768
32 China 12124 A C 768 762 Ser3953Ser
33 China 12125 T 768 768
34 China 12126 A 768 768
35 China 12127 T 768 768
36 China 12128 G 768 768
37 China 12129 C 768 768
38 China 12130 A T 768 762 Ala3955Ala
39 China 12131 G 768 768
40 China 12132 C 768 768
41 China 12133 T C 768 762 Ala3956Ala
42 China 12134 T 768 768
43 China 12135 T 768 768
44 China 12136 T 768 768
45 China 12137 G 768 768
46 China 12138 C 768 768
47 China 12139 T 768 768
48 China 12140 A 768 768
49 China 12141 C A 768 767 Thr3959Asn
50 China 12142 T A,C 768 760 Thr3959Thr-p.Thr3959Thr
51 China 12143 G 768 768
52 China 12144 C 768 768
53 China 12145 T 768 768
54 China 12146 C 769 769
55 China 12147 A 769 769
56 China 12148 A G 769 767 Gln3961Gln
57 China 12149 G 770 770
58 China 12150 A 770 770
59 China 12151 A G 770 769 Glu3962Glu
60 China 12152 G 770 770
61 China 12153 C 770 770
62 China 12154 T 770 770
63 China 12155 T 770 770
64 China 12156 A 770 770
65 China 12157 T 770 770
66 China 12158 G 770 770
67 China 12159 A 770 770
68 China 12160 G 770 770
69 China 12161 C 770 770
70 China 12162 A 770 769
71 China 12163 G A 770 763 Gln3966Gln
72 China 12164 G 770 770
73 China 12165 C 770 770
74 China 12166 T G 770 764 Ala3967Ala
75 China 12167 G 770 770
76 China 12168 T 770 770
77 China 12169 T G,A 770 763 Val3968Val-p.Val3968Val
78 China 12170 G 770 770
79 China 12171 C 770 770
80 China 12172 T 770 770
81 China 12173 A 770 770
82 China 12174 A 770 770
83 China 12175 T C 770 764 Asn3970Asn
84 China 12176 G 770 770
85 China 12177 G 770 770
86 China 12178 T 770 770
87 China 12179 G 770 770
88 China 12180 A 770 770
89 China 12181 T C 770 765 Asp3972Asp
90 China 12182 T 770 770
91 China 12183 C 770 770
92 China 12184 T 770 770
93 China 12185 G 770 770
94 China 12186 A 770 770
95 China 12187 A 770 770
96 China 12188 G 770 770
97 China 12189 T 770 770
98 China 12190 T G 770 764 Val3975Val
99 China 12191 G 770 770
100 China 12192 T 770 770
101 China 12193 T C,A 770 768 Val3976Val-p.Val3976Val
102 China 12194 C 770 770
103 China 12195 T 770 770
104 China 12196 T 770 770
105 China 12197 A 770 770
106 China 12198 A 770 770
107 China 12199 A G 770 769 Lys3978Lys
108 China 12200 A 770 770
109 China 12201 A 770 770
110 China 12202 G A 770 769 Lys3979Lys
111 China 12203 T 770 770
112 China 12204 T 770 770
113 China 12205 G A 771 761 Leu3980Leu
114 China 12206 A 771 771
115 China 12207 A 771 771
116 China 12208 G 771 771
117 China 12209 A 771 771
118 China 12210 A 771 771
119 China 12211 G A 771 761 Lys3982Lys
120 China 12212 T 771 771
121 China 12213 C T 771 770 Ser3983Phe
122 China 12214 T 771 771
123 China 12215 T C 771 764 Leu3984Leu
124 China 12216 T 771 771
125 China 12217 G 771 771
126 China 12218 A 771 771
127 China 12219 A 771 771
128 China 12220 T 771 771
129 China 12221 G 771 771
130 China 12222 T 771 771
131 China 12223 G 771 771
132 China 12224 G 771 771
133 China 12225 C 771 771
134 China 12226 T A 771 765 Ala3987Ala
135 China 12227 A 771 771
136 China 12228 A 771 771
137 China 12229 A G 771 765 Lys3988Lys
138 China 12230 T 771 771
139 China 12231 C 771 771
140 China 12232 T 771 771
141 China 12233 G T 771 770 Glu3990*
142 China 12234 A 771 771
143 China 12235 A G 771 770 Glu3990Glu
144 China 12236 T 771 770
145 China 12237 T 771 771
146 China 12238 T 771 771
147 China 12239 G 771 771
148 China 12240 A 771 771
149 China 12241 C 771 771
150 China 12242 C 771 771
151 China 12243 G 771 771
152 China 12244 T 771 771
153 China 12245 G 771 771
154 China 12246 A 771 771
155 China 12247 T 771 771
156 China 12248 G 771 771
157 China 12249 C 771 771
158 China 12250 A G 771 764 Ala3995Ala
159 China 12251 G 771 771
160 China 12252 C 771 771
161 China 12253 C T 771 766 Ala3996Ala
162 China 12254 A 771 771
163 China 12255 T 771 771
164 China 12256 G 771 771
165 China 12257 C 771 771
166 China 12258 A 771 771
167 China 12259 A G 771 765 Gln3998Gln
168 China 12260 C 771 771
169 China 12261 G 771 771
170 China 12262 T C 771 770 Arg3999Arg
171 China 12263 A 771 771
172 China 12264 A 771 771
173 China 12265 G 771 771
174 China 12266 T C 771 765 Leu4001Leu
175 China 12267 T 771 771
176 China 12268 G A 771 765 Leu4001Leu
177 China 12269 G 771 771
178 China 12270 A 771 771
179 China 12271 A G 771 768 Glu4002Glu
180 China 12272 A 770 770
181 China 12273 A 770 770
182 China 12274 G 770 770
183 China 12275 A 770 770
184 China 12276 T 770 770
185 China 12277 G 770 770
186 China 12278 G 770 770
187 China 12279 C 770 770
188 China 12280 T A 770 769 Ala4005Ala
189 China 12281 G 770 770
190 China 12282 A 770 770
191 China 12283 T 770 770
192 China 12284 C 770 770
193 China 12285 A 770 770
194 China 12286 A 770 769
195 China 12287 G 770 770
196 China 12288 C 770 770
197 China 12289 T 770 770
198 China 12290 A 770 770
199 China 12291 T 770 770
200 China 12292 G 770 770
201 China 12293 A 770 770
202 China 12294 C 770 770
203 China 12295 C 770 770
204 China 12296 C 770 770
205 China 12297 A 770 770
206 China 12298 A G 770 767 Gln4011Gln
207 China 12299 A 770 770
208 China 12300 T 770 770
209 China 12301 G 770 770
210 China 12302 T 770 770
211 China 12303 A 770 770
212 China 12304 T C 770 759 Tyr4013Tyr
213 China 12305 A 770 770
214 China 12306 A 770 770
215 China 12307 A 770 770
216 China 12308 C 770 770
217 China 12309 A 770 770
218 China 12310 G 770 770
219 China 12311 G T 770 769 Ala4016Ser
220 China 12312 C 770 770
221 China 12313 T A 770 760 Ala4016Ala
222 China 12314 A C 770 764 Arg4017Arg
223 China 12315 G 770 770
224 China 12316 A G 770 764 Arg4017Arg
225 China 12317 T 770 770
226 China 12318 C G 770 769 Ser4018Cys
227 China 12319 T 770 770
228 China 12320 G 770 770
229 China 12321 A 770 770
230 China 12322 G A 770 760 Glu4019Glu
231 China 12323 G 770 770
232 China 12324 A 770 770
233 China 12325 C 770 770
234 China 12326 A 770 770
235 China 12327 A 770 770
236 China 12328 G A 770 767 Lys4021Lys
237 China 12329 A 770 770
238 China 12330 G 770 770
239 China 12331 G 770 770
240 China 12332 G T 769 768 Ala4023Ser
241 China 12333 C 769 769
242 China 12334 A 769 769
243 China 12335 A 769 769
244 China 12336 A 769 769
245 China 12337 A 769 769
246 China 12338 G C 769 768 Val4025Leu
247 China 12339 T 769 769
248 China 12340 T C 769 762 Val4025Val
249 China 12341 A 769 769
250 China 12342 C 769 769
251 China 12343 T 769 769
252 China 12344 A 769 769
253 China 12345 G T 769 768 Ser4027Ile
254 China 12346 T G 769 768 Ser4027Arg
255 China 12347 G 769 769
256 China 12348 C 769 769
257 China 12349 T A 769 763 Ala4028Ala
258 China 12350 A C 769 768 Met4029Leu
259 China 12351 T 769 769
260 China 12352 G 769 769
261 China 12353 C 769 769
262 China 12354 A 769 769
263 China 12355 G A 769 759 Gln4030Gln
264 China 12356 A 769 769
265 China 12357 C 769 769
266 China 12358 A T 769 763 Thr4031Thr
267 China 12359 A 769 769
268 China 12360 T 769 769
269 China 12361 G 769 769
270 China 12362 C 769 769
271 China 12363 T 769 769
272 China 12364 T 769 769
273 China 12365 T 769 769
274 China 12366 T 769 769
275 China 12367 C 769 769
276 China 12368 A 769 769
277 China 12369 C 769 769
278 China 12370 T 769 769
279 China 12371 A 769 769
280 China 12372 T 769 769
281 China 12373 G 769 769
282 China 12374 C 769 769
283 China 12375 T 769 769
284 China 12376 T 769 769
285 China 12377 A 769 769
286 China 12378 G 769 769
287 China 12379 A G 769 768 Arg4038Arg
288 China 12380 A 769 769
289 China 12381 A 769 769
290 China 12382 G A 769 763 Lys4039Lys
291 China 12383 T C 769 762 Leu4040Leu
292 China 12384 T 769 769
293 China 12385 G T 769 762 Leu4040Phe
294 China 12386 G 769 769
295 China 12387 A 769 769
296 China 12388 T 769 769
297 China 12389 A 769 769
298 China 12390 A 769 769
299 China 12391 T 769 769
300 China 12392 G 771 771
301 China 12393 A 771 771
302 China 12394 T 771 771
303 China 12395 G 771 771
304 China 12396 C 771 771
305 China 12397 A T 771 764 Ala4044Ala
306 China 12398 C 771 770
307 China 12399 T 771 771
308 China 12400 C T,A 771 759 Leu4045Leu-p.Leu4045Leu
309 China 12401 A 771 771
310 China 12402 A 771 771
311 China 12403 C 771 771
312 China 12404 A 771 771
313 China 12405 A 771 771
314 China 12406 C 771 771
315 China 12407 A 771 771
316 China 12408 T 771 771
317 China 12409 T 771 771
318 China 12410 A 771 771
319 China 12411 T 771 771
320 China 12412 C 771 771
321 China 12413 A 771 771
322 China 12414 A 771 771
323 China 12415 C T 771 765 Asn4050Asn
324 China 12416 A 771 771
325 China 12417 A 771 771
326 China 12418 T 771 771
327 China 12419 G 771 771
328 China 12420 C 771 771
329 China 12421 A C 771 765 Ala4052Ala
330 China 12422 A C 771 770 Arg4053Arg
331 China 12423 G 771 771
332 China 12424 A T 771 770 Arg4053Ser
333 China 12425 G 771 771
334 China 12426 A 771 771
335 China 12427 T C 771 765 Asp4054Asp
336 China 12428 G 771 771
337 China 12429 G 771 771
338 China 12430 T 771 771
339 China 12431 T 771 771
340 China 12432 G 771 771
341 China 12433 T 771 771
342 China 12434 G 771 771
343 China 12435 T 771 771
344 China 12436 T A 771 768 Val4057Val
345 China 12437 C 771 771
346 China 12438 C 771 771
347 China 12439 C A,G 771 759 Pro4058Pro-p.Pro4058Pro
348 China 12440 T C 772 765 Leu4059Leu
349 China 12441 T 772 772
350 China 12442 G C 772 771 Leu4059Phe
351 China 12443 A 772 772
352 China 12444 A 772 772
353 China 12445 C 772 772
354 China 12446 A 772 772
355 China 12447 T 772 772
356 China 12448 A C 772 771 Ile4061Ile
357 China 12449 A 772 772
358 China 12450 T 772 772
359 China 12451 A C 772 766 Ile4062Ile
360 China 12452 C 771 771
361 China 12453 C 771 771
362 China 12454 T C,A 771 761 Pro4063Pro-p.Pro4063Pro
363 China 12455 C T 771 770 Leu4064Phe
364 China 12456 T 771 771
365 China 12457 T C,G 771 767 Leu4064Leu-p.Leu4064Leu
366 China 12458 A 771 771
367 China 12459 C T 771 770 Thr4065Ile
368 China 12460 A T,C 771 761 Thr4065Thr-p.Thr4065Thr
369 China 12461 A 771 771
370 China 12462 C 771 771
371 China 12463 A T 771 762 Thr4066Thr
372 China 12464 G 771 771
373 China 12465 C 771 771
374 China 12466 A G 770 769 Ala4067Ala
375 China 12467 G 770 770
376 China 12468 C 770 770
377 China 12469 C T 770 769 Ala4068Ala
378 China 12470 A 770 770
379 China 12471 A 770 770
380 China 12472 A 770 770
381 China 12473 C T 770 759 Leu4070Leu
382 China 12474 T 770 770
383 China 12475 A C 770 769 Leu4070Leu
384 China 12476 A 770 770
385 China 12477 T 770 770
386 China 12478 G 770 770
387 China 12479 G 770 770
388 China 12480 T 770 769
389 China 12481 T 770 769
390 China 12482 G 770 769
391 China 12483 T 770 769
392 China 12484 C T 770 762 Val4073Val
393 China 12485 A G 770 763 Ile4074Val
394 China 12486 T 770 770
395 China 12487 A C 770 769 Ile4074Ile
396 China 12488 C 770 770
397 China 12489 C 770 770
398 China 12490 A T 770 763 Pro4075Pro
399 China 12491 G 770 770
400 China 12492 A 770 770
401 China 12493 C T 770 769 Asp4076Asp
402 China 12494 T 770 770
403 China 12495 A 770 770
404 China 12496 T 770 770
405 China 12497 A G 770 769 Asn4078Asp
406 China 12498 A G 770 769 Asn4078Ser
407 China 12499 C T 770 769 Asn4078Asn
408 China 12500 A 770 770
409 China 12501 C 770 770
410 China 12502 A C 770 763 Thr4079Thr
411 China 12503 T 770 770
412 China 12504 A 770 770
413 China 12505 T C 770 769 Tyr4080Tyr
414 China 12506 A 770 770
415 China 12507 A 770 770
416 China 12508 A G 770 766 Lys4081Lys
417 China 12509 A 770 770
418 China 12510 A 770 770
419 China 12511 T C 770 766 Asn4082Asn
420 China 12512 A 770 770
421 China 12513 C 770 770
422 China 12514 G T 770 763 Thr4083Thr
423 China 12515 T 770 770
424 China 12516 G 770 770
425 China 12517 T 770 770
426 China 12518 G 770 770
427 China 12519 A 770 770
428 China 12520 T A 770 764 Asp4085Glu
429 China 12521 G 770 770
430 China 12522 G 770 770
431 China 12523 T 770 770
432 China 12524 A 770 770
433 China 12525 C G,A 770 763 Thr4087Arg-p.Thr4087Lys
434 China 12526 A T,C 770 760 Thr4087Thr-p.Thr4087Thr
435 China 12527 A 770 770
436 China 12528 C 770 770
437 China 12529 A T 770 760 Thr4088Thr
438 China 12530 T 770 770
439 China 12531 T 770 770
440 China 12532 T 770 770
441 China 12533 A 770 770
442 China 12534 C 770 770
443 China 12535 T A 770 769 Thr4090Thr
444 China 12536 T 770 770
445 China 12537 A 770 770
446 China 12538 T 770 770
447 China 12539 G 770 770
448 China 12540 C 770 770
449 China 12541 A C,G 770 763 Ala4092Ala-p.Ala4092Ala
450 China 12542 T 770 770
451 China 12543 C 770 770
452 China 12544 A T,G 770 768 Ser4093Ser-p.Ser4093Ser
453 China 12545 G 770 770
454 China 12546 C 770 769
455 China 12547 A 770 770
456 China 12548 T C 770 760 Leu4095Leu
457 China 12549 T 770 770
458 China 12550 G T,A,C 770 760 Leu4095Phe-p.Leu4095Leu
459 China 12551 T 770 770
460 China 12552 G 769 769
461 China 12553 G 769 769
462 China 12554 G 769 769
463 China 12555 A 769 769
464 China 12556 A G 769 768 Glu4097Glu
465 China 12557 A 769 769
466 China 12558 T 769 769
467 China 12559 C T 769 763 Ile4098Ile
468 China 12560 C 769 769
469 China 12561 A 769 769
470 China 12562 A G 769 765 Gln4099Gln
471 China 12563 C 769 769
472 China 12564 A 769 769
473 China 12565 G A 769 759 Gln4100Gln
474 China 12566 G 769 769
475 China 12567 T 769 769
476 China 12568 T 769 769
477 China 12569 G 769 769
478 China 12570 T 770 770
479 China 12571 A T 770 760 Val4102Val
480 China 12572 G 770 770
481 China 12573 A 770 770
482 China 12574 T C 770 769 Asp4103Asp
483 China 12575 G 770 770
484 China 12576 C 770 770
485 China 12577 A 770 770
486 China 12578 G 770 770
487 China 12579 A 770 770
488 China 12580 T 770 770
489 China 12581 A 770 770
490 China 12582 G 770 770
491 China 12583 T C 770 764 Ser4106Ser
492 China 12584 A 770 770
493 China 12585 A 770 770
494 China 12586 A 770 770
495 China 12587 A 770 770
496 China 12588 T 770 770
497 China 12589 T A 770 764 Ile4108Ile
498 China 12590 G 770 770
499 China 12591 T 770 770
500 China 12592 T C 770 762 Val4109Val
501 China 12593 C 770 770
502 China 12594 A 770 770
503 China 12595 A G 770 767 Gln4110Gln
504 China 12596 C 770 770
505 China 12597 T A 770 769 Leu4111His
506 China 12598 T 770 770
507 China 12599 A 770 770
508 China 12600 G 770 770
509 China 12601 T 770 770
510 China 12602 G 770 770
511 China 12603 A 770 770
512 China 12604 A G 770 767 Glu4113Glu
513 China 12605 A 770 770
514 China 12606 T 770 770
515 China 12607 T C 770 769 Ile4114Ile
516 China 12608 A 770 770
517 China 12609 G C,A 770 763 Ser4115Thr-p.Ser4115Asn
518 China 12610 T C 770 768 Ser4115Ser
519 China 12611 A 770 770
520 China 12612 T 770 770
521 China 12613 G 770 770
522 China 12614 G 770 770
523 China 12615 A 770 770
524 China 12616 C 770 770
525 China 12617 A 770 770
526 China 12618 A G 770 769 Asn4118Ser
527 China 12619 T 770 770
528 China 12620 T 770 770
529 China 12621 C 770 770
530 China 12622 A T,G 770 763 Ser4119Ser-p.Ser4119Ser
531 China 12623 C 770 770
532 China 12624 C 770 770
533 China 12625 T A 770 769 Pro4120Pro
534 China 12626 A 770 770
535 China 12627 A 770 770
536 China 12628 T 770 770
537 China 12629 T A,C 770 761 Leu4122Ile-p.Leu4122Leu
538 China 12630 T 770 770
539 China 12631 A T,G 770 763 Leu4122Phe-p.Leu4122Leu
540 China 12632 G 770 770
541 China 12633 C 770 770
542 China 12634 A T 770 763 Ala4123Ala
543 China 12635 T 770 770
544 China 12636 G 770 770
545 China 12637 G 770 770
546 China 12638 C 770 770
547 China 12639 C 770 770
548 China 12640 T 770 770
549 China 12641 C 770 770
550 China 12642 T 770 770
551 China 12643 T C 770 767 Leu4126Leu
552 China 12644 A 770 770
553 China 12645 T 770 770
554 China 12646 T 770 770
555 China 12647 G 770 770
556 China 12648 T 770 770
557 China 12649 A T 770 769 Val4128Val
558 China 12650 A 770 770
559 China 12651 C 770 770
560 China 12652 A 770 770
561 China 12653 G 770 770
562 China 12654 C 770 770
563 China 12655 T C 770 767 Ala4130Ala
564 China 12656 T 770 770
565 China 12657 T 770 770
566 China 12658 A G 770 767 Leu4131Leu
567 China 12659 A 770 770
568 China 12660 G 770 770
569 China 12661 G A 770 763 Arg4132Arg
570 China 12662 G 770 770
571 China 12663 C 770 770
572 China 12664 C 770 770
573 China 12665 A 770 770
574 China 12666 A 770 770
575 China 12667 T 770 769
576 China 12668 T 770 770
577 China 12669 C 770 770
578 China 12670 T A 770 763 Ser4135Ser
579 China 12671 G 770 770
580 China 12672 C 770 770
581 China 12673 T 770 770
582 China 12674 G 770 770
583 China 12675 T 770 770
584 China 12676 C 770 770
585 China 12677 A 770 770
586 China 12678 A 770 770
587 China 12679 A 770 770
588 China 12680 T C 770 763 Leu4139Leu
589 China 12681 T 770 770
590 China 12682 A T 770 764 Leu4139Phe
591 China 12683 C 770 770
592 China 12684 A 769 769
593 China 12685 G 769 769