National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   594                                        
?                                            
A   84 1                             2   3    
C   6                                        
D   39     1     1                            
E   27                                   1    
F   15                                        
G   9                                        
H                                            
I   30                     1             1    
K   45                                        
L   54             1     2                    
M   27                                        
N   39                                        
P   18             1           2     2        
Q   33                                        
R   21                             1          
S   45                               2        
T   39               3     1           1      
V   39 1                                      
W   6                                        
Y   18                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Chile 12092 G 966 966
1 Chile 12093 C 966 966
2 Chile 12094 T 966 966
3 Chile 12095 A 966 966
4 Chile 12096 T 966 966
5 Chile 12097 A 966 966
6 Chile 12098 G 966 966
7 Chile 12099 C 966 966
8 Chile 12100 C 966 966
9 Chile 12101 T 966 966
10 Chile 12102 C 966 966
11 Chile 12103 A 966 966
12 Chile 12104 G 966 966
13 Chile 12105 A 966 966
14 Chile 12106 G 966 966
15 Chile 12107 T 966 966
16 Chile 12108 T 966 966
17 Chile 12109 T 966 966
18 Chile 12110 A 966 966
19 Chile 12111 G 966 966
20 Chile 12112 T 966 966
21 Chile 12113 T 966 966
22 Chile 12114 C 966 966
23 Chile 12115 C T 966 962 Ser3950Ser
24 Chile 12116 C 966 966
25 Chile 12117 T 966 966
26 Chile 12118 T 966 966
27 Chile 12119 C T 966 964 Pro3952Ser
28 Chile 12120 C 966 966
29 Chile 12121 A T 966 965 Pro3952Pro
30 Chile 12122 T 966 966
31 Chile 12123 C 966 966
32 Chile 12124 A 966 966
33 Chile 12125 T 966 966
34 Chile 12126 A 966 966
35 Chile 12127 T 966 966
36 Chile 12128 G 966 966
37 Chile 12129 C 966 966
38 Chile 12130 A 966 966
39 Chile 12131 G 966 966
40 Chile 12132 C 966 966
41 Chile 12133 T 966 966
42 Chile 12134 T 966 966
43 Chile 12135 T 966 966
44 Chile 12136 T 966 966
45 Chile 12137 G 966 966
46 Chile 12138 C 966 966
47 Chile 12139 T 966 966
48 Chile 12140 A 966 966
49 Chile 12141 C 966 966
50 Chile 12142 T 966 966
51 Chile 12143 G 966 966
52 Chile 12144 C 966 966
53 Chile 12145 T 966 966
54 Chile 12146 C 966 966
55 Chile 12147 A 966 966
56 Chile 12148 A 966 966
57 Chile 12149 G 966 966
58 Chile 12150 A 966 966
59 Chile 12151 A 966 966
60 Chile 12152 G 966 965
61 Chile 12153 C 966 966
62 Chile 12154 T 966 966
63 Chile 12155 T 966 966
64 Chile 12156 A 966 966
65 Chile 12157 T 966 966
66 Chile 12158 G 966 966
67 Chile 12159 A T 966 965 Glu3965Val
68 Chile 12160 G 966 966
69 Chile 12161 C 966 966
70 Chile 12162 A 966 966
71 Chile 12163 G 966 966
72 Chile 12164 G 966 966
73 Chile 12165 C 966 966
74 Chile 12166 T C 966 965 Ala3967Ala
75 Chile 12167 G 966 966
76 Chile 12168 T 966 966
77 Chile 12169 T 966 966
78 Chile 12170 G 966 966
79 Chile 12171 C 966 966
80 Chile 12172 T 966 966
81 Chile 12173 A 966 966
82 Chile 12174 A 966 966
83 Chile 12175 T 966 966
84 Chile 12176 G 966 966
85 Chile 12177 G 966 966
86 Chile 12178 T 966 966
87 Chile 12179 G 966 966
88 Chile 12180 A G 966 965 Asp3972Gly
89 Chile 12181 T 966 966
90 Chile 12182 T 966 966
91 Chile 12183 C 966 966
92 Chile 12184 T 966 966
93 Chile 12185 G 966 966
94 Chile 12186 A 966 966
95 Chile 12187 A 966 966
96 Chile 12188 G 966 966
97 Chile 12189 T 966 966
98 Chile 12190 T 966 966
99 Chile 12191 G 966 966
100 Chile 12192 T C 966 965 Val3976Ala
101 Chile 12193 T 966 966
102 Chile 12194 C 966 966
103 Chile 12195 T 966 966
104 Chile 12196 T 966 966
105 Chile 12197 A 966 966
106 Chile 12198 A 966 966
107 Chile 12199 A 966 966
108 Chile 12200 A 966 966
109 Chile 12201 A 966 966
110 Chile 12202 G 966 966
111 Chile 12203 T 966 966
112 Chile 12204 T 966 966
113 Chile 12205 G 966 966
114 Chile 12206 A 966 966
115 Chile 12207 A 966 966
116 Chile 12208 G 966 966
117 Chile 12209 A 966 966
118 Chile 12210 A 966 966
119 Chile 12211 G 966 966
120 Chile 12212 T 966 966
121 Chile 12213 C 966 966
122 Chile 12214 T 966 966
123 Chile 12215 T 966 966
124 Chile 12216 T 966 966
125 Chile 12217 G 966 966
126 Chile 12218 A 966 966
127 Chile 12219 A 966 966
128 Chile 12220 T 966 966
129 Chile 12221 G 966 966
130 Chile 12222 T 966 966
131 Chile 12223 G 966 966
132 Chile 12224 G 966 966
133 Chile 12225 C T 966 965 Ala3987Val
134 Chile 12226 T 966 966
135 Chile 12227 A 966 966
136 Chile 12228 A 966 966
137 Chile 12229 A 966 966
138 Chile 12230 T 966 966
139 Chile 12231 C 966 966
140 Chile 12232 T 966 966
141 Chile 12233 G 966 966
142 Chile 12234 A 966 966
143 Chile 12235 A 966 966
144 Chile 12236 T 966 966
145 Chile 12237 T 966 966
146 Chile 12238 T 966 966
147 Chile 12239 G 966 966
148 Chile 12240 A 966 966
149 Chile 12241 C T 966 965 Asp3992Asp
150 Chile 12242 C 966 966
151 Chile 12243 G 966 966
152 Chile 12244 T 966 966
153 Chile 12245 G 966 966
154 Chile 12246 A 966 966
155 Chile 12247 T 966 966
156 Chile 12248 G 966 966
157 Chile 12249 C 966 966
158 Chile 12250 A 966 966
159 Chile 12251 G 966 966
160 Chile 12252 C 966 966
161 Chile 12253 C 966 966
162 Chile 12254 A 966 966
163 Chile 12255 T 966 966
164 Chile 12256 G 966 966
165 Chile 12257 C 966 966
166 Chile 12258 A 966 966
167 Chile 12259 A 966 966
168 Chile 12260 C 966 965
169 Chile 12261 G 966 966
170 Chile 12262 T 966 966
171 Chile 12263 A 966 966
172 Chile 12264 A 966 966
173 Chile 12265 G 966 966
174 Chile 12266 T 966 966
175 Chile 12267 T 966 966
176 Chile 12268 G 966 966
177 Chile 12269 G 966 966
178 Chile 12270 A 966 966
179 Chile 12271 A 966 966
180 Chile 12272 A 966 966
181 Chile 12273 A 966 966
182 Chile 12274 G 966 966
183 Chile 12275 A 966 966
184 Chile 12276 T 966 966
185 Chile 12277 G 966 966
186 Chile 12278 G 966 966
187 Chile 12279 C 966 966
188 Chile 12280 T 966 966
189 Chile 12281 G 966 966
190 Chile 12282 A 966 966
191 Chile 12283 T 966 966
192 Chile 12284 C 966 966
193 Chile 12285 A 966 966
194 Chile 12286 A 966 966
195 Chile 12287 G 966 966
196 Chile 12288 C 966 966
197 Chile 12289 T 966 966
198 Chile 12290 A 966 966
199 Chile 12291 T 966 966
200 Chile 12292 G 966 966
201 Chile 12293 A 966 966
202 Chile 12294 C 966 966
203 Chile 12295 C 966 966
204 Chile 12296 C 966 966
205 Chile 12297 A 966 966
206 Chile 12298 A 966 966
207 Chile 12299 A 966 966
208 Chile 12300 T 966 966
209 Chile 12301 G 966 966
210 Chile 12302 T 966 966
211 Chile 12303 A 966 965
212 Chile 12304 T 966 966
213 Chile 12305 A 966 966
214 Chile 12306 A 966 966
215 Chile 12307 A 966 966
216 Chile 12308 C 966 966
217 Chile 12309 A 966 966
218 Chile 12310 G 966 966
219 Chile 12311 G 966 966
220 Chile 12312 C 966 966
221 Chile 12313 T 966 966
222 Chile 12314 A 966 966
223 Chile 12315 G 966 966
224 Chile 12316 A 966 966
225 Chile 12317 T 966 966
226 Chile 12318 C 966 966
227 Chile 12319 T A 966 964 Ser4018Ser
228 Chile 12320 G 966 966
229 Chile 12321 A 966 966
230 Chile 12322 G 966 966
231 Chile 12323 G 966 966
232 Chile 12324 A 966 966
233 Chile 12325 C 966 966
234 Chile 12326 A 966 966
235 Chile 12327 A 966 966
236 Chile 12328 G 966 966
237 Chile 12329 A 966 966
238 Chile 12330 G 966 966
239 Chile 12331 G 966 966
240 Chile 12332 G 966 965
241 Chile 12333 C 966 966
242 Chile 12334 A 966 966
243 Chile 12335 A 966 966
244 Chile 12336 A 966 966
245 Chile 12337 A 966 966
246 Chile 12338 G 966 966
247 Chile 12339 T 966 966
248 Chile 12340 T 966 966
249 Chile 12341 A 966 966
250 Chile 12342 C 966 966
251 Chile 12343 T 966 966
252 Chile 12344 A 966 966
253 Chile 12345 G 966 966
254 Chile 12346 T 966 966
255 Chile 12347 G 966 966
256 Chile 12348 C 966 966
257 Chile 12349 T 966 966
258 Chile 12350 A 966 966
259 Chile 12351 T 966 966
260 Chile 12352 G 966 966
261 Chile 12353 C 966 966
262 Chile 12354 A 966 966
263 Chile 12355 G 966 966
264 Chile 12356 A 966 966
265 Chile 12357 C 966 966
266 Chile 12358 A 966 966
267 Chile 12359 A 966 966
268 Chile 12360 T 966 966
269 Chile 12361 G 966 966
270 Chile 12362 C 966 966
271 Chile 12363 T 966 966
272 Chile 12364 T A 966 965 Leu4033Leu
273 Chile 12365 T 966 966
274 Chile 12366 T 966 966
275 Chile 12367 C 966 966
276 Chile 12368 A 966 966
277 Chile 12369 C 966 966
278 Chile 12370 T 966 966
279 Chile 12371 A 966 966
280 Chile 12372 T 966 966
281 Chile 12373 G 966 966
282 Chile 12374 C 966 965
283 Chile 12375 T 966 966
284 Chile 12376 T 966 966
285 Chile 12377 A 966 966
286 Chile 12378 G 966 966
287 Chile 12379 A 966 966
288 Chile 12380 A 966 966
289 Chile 12381 A 966 966
290 Chile 12382 G 966 966
291 Chile 12383 T 966 966
292 Chile 12384 T 966 966
293 Chile 12385 G 966 966
294 Chile 12386 G 966 966
295 Chile 12387 A 966 966
296 Chile 12388 T 966 966
297 Chile 12389 A 966 966
298 Chile 12390 A 966 966
299 Chile 12391 T 966 966
300 Chile 12392 G 966 966
301 Chile 12393 A 966 966
302 Chile 12394 T 966 966
303 Chile 12395 G 966 966
304 Chile 12396 C 966 966
305 Chile 12397 A 966 965
306 Chile 12398 C 966 966
307 Chile 12399 T 966 966
308 Chile 12400 C T 966 965 Leu4045Leu
309 Chile 12401 A 966 966
310 Chile 12402 A 966 966
311 Chile 12403 C 966 966
312 Chile 12404 A 966 966
313 Chile 12405 A 966 966
314 Chile 12406 C 966 966
315 Chile 12407 A 966 966
316 Chile 12408 T 966 966
317 Chile 12409 T 966 966
318 Chile 12410 A 966 966
319 Chile 12411 T 966 966
320 Chile 12412 C 966 966
321 Chile 12413 A 966 966
322 Chile 12414 A 966 966
323 Chile 12415 C 966 966
324 Chile 12416 A 966 966
325 Chile 12417 A 966 966
326 Chile 12418 T 966 966
327 Chile 12419 G 966 966
328 Chile 12420 C 966 966
329 Chile 12421 A 966 966
330 Chile 12422 A 966 966
331 Chile 12423 G 966 966
332 Chile 12424 A 966 966
333 Chile 12425 G 966 966
334 Chile 12426 A 966 966
335 Chile 12427 T 966 966
336 Chile 12428 G 966 966
337 Chile 12429 G 966 966
338 Chile 12430 T 966 966
339 Chile 12431 T 966 966
340 Chile 12432 G 966 966
341 Chile 12433 T 966 966
342 Chile 12434 G 966 966
343 Chile 12435 T 966 966
344 Chile 12436 T 966 966
345 Chile 12437 C 966 966
346 Chile 12438 C 966 966
347 Chile 12439 C T 966 963 Pro4058Pro
348 Chile 12440 T 966 966
349 Chile 12441 T 966 966
350 Chile 12442 G 966 966
351 Chile 12443 A 966 966
352 Chile 12444 A 966 966
353 Chile 12445 C 966 966
354 Chile 12446 A 966 966
355 Chile 12447 T 966 966
356 Chile 12448 A 966 966
357 Chile 12449 A 966 966
358 Chile 12450 T 966 966
359 Chile 12451 A 966 966
360 Chile 12452 C 966 966
361 Chile 12453 C 966 966
362 Chile 12454 T 966 966
363 Chile 12455 C 966 966
364 Chile 12456 T 966 966
365 Chile 12457 T 966 966
366 Chile 12458 A 966 966
367 Chile 12459 C T 966 964 Thr4065Ile
368 Chile 12460 A 966 966
369 Chile 12461 A 966 966
370 Chile 12462 C 966 966
371 Chile 12463 A 966 965
372 Chile 12464 G T 966 965 Ala4067Ser
373 Chile 12465 C 966 966
374 Chile 12466 A 963 963
375 Chile 12467 G 963 963
376 Chile 12468 C 963 963
377 Chile 12469 C 963 963
378 Chile 12470 A 963 963
379 Chile 12471 A 963 963
380 Chile 12472 A 963 963
381 Chile 12473 C 963 963
382 Chile 12474 T 963 963
383 Chile 12475 A 963 963
384 Chile 12476 A 963 963
385 Chile 12477 T 963 963
386 Chile 12478 G 963 963
387 Chile 12479 G 963 963
388 Chile 12480 T 963 963
389 Chile 12481 T 963 963
390 Chile 12482 G 963 963
391 Chile 12483 T 963 963
392 Chile 12484 C 963 963
393 Chile 12485 A 963 963
394 Chile 12486 T 963 963
395 Chile 12487 A G 963 962 Ile4074Met
396 Chile 12488 C 963 963
397 Chile 12489 C 963 963
398 Chile 12490 A 963 963
399 Chile 12491 G 960 960
400 Chile 12492 A 959 958
401 Chile 12493 C 959 958
402 Chile 12494 T 959 958
403 Chile 12495 A 959 958
404 Chile 12496 T 959 958
405 Chile 12497 A 959 958
406 Chile 12498 A 959 958
407 Chile 12499 C 959 958
408 Chile 12500 A 959 958
409 Chile 12501 C 959 958
410 Chile 12502 A 959 958
411 Chile 12503 T 959 958
412 Chile 12504 A 959 958
413 Chile 12505 T 959 958
414 Chile 12506 A 959 909
415 Chile 12507 A 959 958
416 Chile 12508 A 959 958
417 Chile 12509 A 959 958
418 Chile 12510 A 959 958
419 Chile 12511 T 959 958
420 Chile 12512 A 959 958
421 Chile 12513 C T 959 955 Thr4083Met
422 Chile 12514 G 959 958
423 Chile 12515 T 959 958
424 Chile 12516 G 959 958
425 Chile 12517 T 959 958
426 Chile 12518 G 959 958
427 Chile 12519 A 959 959
428 Chile 12520 T 959 959
429 Chile 12521 G 959 959
430 Chile 12522 G 959 959
431 Chile 12523 T 959 959
432 Chile 12524 A 959 959
433 Chile 12525 C T 959 958 Thr4087Ile
434 Chile 12526 A 959 959
435 Chile 12527 A 959 959
436 Chile 12528 C T 959 958 Thr4088Ile
437 Chile 12529 A 959 959
438 Chile 12530 T 959 959
439 Chile 12531 T 959 959
440 Chile 12532 T 959 959
441 Chile 12533 A 959 959
442 Chile 12534 C 959 959
443 Chile 12535 T 959 959
444 Chile 12536 T 959 959
445 Chile 12537 A 959 959
446 Chile 12538 T 959 959
447 Chile 12539 G 959 959
448 Chile 12540 C T 959 958 Ala4092Val
449 Chile 12541 A 959 959
450 Chile 12542 T 959 959
451 Chile 12543 C 959 959
452 Chile 12544 A 959 959
453 Chile 12545 G T 959 958 Ala4094Ser
454 Chile 12546 C T 959 958 Ala4094Val
455 Chile 12547 A 959 959
456 Chile 12548 T 959 959
457 Chile 12549 T 959 959
458 Chile 12550 G 959 959
459 Chile 12551 T 959 959
460 Chile 12552 G 959 959
461 Chile 12553 G 959 959
462 Chile 12554 G 959 959
463 Chile 12555 A 959 959
464 Chile 12556 A 959 959
465 Chile 12557 A 959 959
466 Chile 12558 T 959 959
467 Chile 12559 C 959 959
468 Chile 12560 C 959 959
469 Chile 12561 A 959 959
470 Chile 12562 A 959 959
471 Chile 12563 C 959 959
472 Chile 12564 A 959 959
473 Chile 12565 G 959 959
474 Chile 12566 G 959 959
475 Chile 12567 T 959 959
476 Chile 12568 T 959 959
477 Chile 12569 G 959 959
478 Chile 12570 T 959 959
479 Chile 12571 A 959 959
480 Chile 12572 G 959 959
481 Chile 12573 A 959 959
482 Chile 12574 T 959 959
483 Chile 12575 G 959 959
484 Chile 12576 C 959 959
485 Chile 12577 A 959 959
486 Chile 12578 G 959 959
487 Chile 12579 A 959 959
488 Chile 12580 T 959 959
489 Chile 12581 A 959 959
490 Chile 12582 G 959 959
491 Chile 12583 T 959 959
492 Chile 12584 A 959 959
493 Chile 12585 A 959 959
494 Chile 12586 A 959 959
495 Chile 12587 A 959 959
496 Chile 12588 T 959 959
497 Chile 12589 T 959 959
498 Chile 12590 G 959 959
499 Chile 12591 T 959 959
500 Chile 12592 T 959 959
501 Chile 12593 C 959 959
502 Chile 12594 A 959 959
503 Chile 12595 A 959 959
504 Chile 12596 C 959 959
505 Chile 12597 T 959 959
506 Chile 12598 T 959 959
507 Chile 12599 A 959 959
508 Chile 12600 G 959 959
509 Chile 12601 T 959 959
510 Chile 12602 G 959 959
511 Chile 12603 A 959 959
512 Chile 12604 A 959 959
513 Chile 12605 A 959 959
514 Chile 12606 T 959 959
515 Chile 12607 T 959 959
516 Chile 12608 A 959 959
517 Chile 12609 G 959 959
518 Chile 12610 T 959 959
519 Chile 12611 A 959 959
520 Chile 12612 T 959 959
521 Chile 12613 G 959 959
522 Chile 12614 G 959 959
523 Chile 12615 A 959 959
524 Chile 12616 C 959 959
525 Chile 12617 A 959 959
526 Chile 12618 A 959 959
527 Chile 12619 T 959 959
528 Chile 12620 T 959 959
529 Chile 12621 C 959 959
530 Chile 12622 A 959 959
531 Chile 12623 C T 959 958 Pro4120Ser
532 Chile 12624 C A 959 956 Pro4120His
533 Chile 12625 T 959 959
534 Chile 12626 A 959 959
535 Chile 12627 A 959 959
536 Chile 12628 T 959 959
537 Chile 12629 T 959 959
538 Chile 12630 T 959 959
539 Chile 12631 A 959 959
540 Chile 12632 G 959 959
541 Chile 12633 C 959 959
542 Chile 12634 A 959 959
543 Chile 12635 T 959 959
544 Chile 12636 G 959 959
545 Chile 12637 G 959 959
546 Chile 12638 C 959 959
547 Chile 12639 C 959 959
548 Chile 12640 T 959 959
549 Chile 12641 C 959 959
550 Chile 12642 T A 959 958 Leu4126His
551 Chile 12643 T 959 959
552 Chile 12644 A G 959 957 Ile4127Val
553 Chile 12645 T 959 959
554 Chile 12646 T 959 959
555 Chile 12647 G 959 959
556 Chile 12648 T 959 959
557 Chile 12649 A 959 959
558 Chile 12650 A 959 959
559 Chile 12651 C 959 959
560 Chile 12652 A G 959 958 Thr4129Thr
561 Chile 12653 G 959 959
562 Chile 12654 C 959 959
563 Chile 12655 T 959 959
564 Chile 12656 T 959 959
565 Chile 12657 T 959 959
566 Chile 12658 A 959 959
567 Chile 12659 A 959 959
568 Chile 12660 G 959 959
569 Chile 12661 G A 959 887 Arg4132Arg
570 Chile 12662 G 959 959
571 Chile 12663 C 959 959
572 Chile 12664 C 959 959
573 Chile 12665 A 959 959
574 Chile 12666 A 959 959
575 Chile 12667 T 959 959
576 Chile 12668 T 959 959
577 Chile 12669 C 959 959
578 Chile 12670 T 959 959
579 Chile 12671 G 959 959
580 Chile 12672 C 959 959
581 Chile 12673 T 959 959
582 Chile 12674 G 959 959
583 Chile 12675 T 959 959
584 Chile 12676 C 959 959
585 Chile 12677 A 959 959
586 Chile 12678 A 959 959
587 Chile 12679 A 959 959
588 Chile 12680 T 959 959
589 Chile 12681 T 959 959
590 Chile 12682 A 959 959
591 Chile 12683 C 959 959
592 Chile 12684 A 959 959
593 Chile 12685 G 959 959