National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84                                      
C   6                                      
D   39                                      
E   27                                      
F   15                                      
G   9                                      
I   30                                      
K   45                                      
L   54                                      
M   27                                      
N   39                                      
P   18                                      
Q   33                                      
R   21                                      
S   45                                      
T   39                                      
V   39                                      
W   6                                      
Y   18                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Botswana 12092 G 13 13
1 Botswana 12093 C 13 13
2 Botswana 12094 T 13 13
3 Botswana 12095 A 13 13
4 Botswana 12096 T 13 13
5 Botswana 12097 A 13 13
6 Botswana 12098 G 13 13
7 Botswana 12099 C 13 13
8 Botswana 12100 C 13 13
9 Botswana 12101 T 13 13
10 Botswana 12102 C 13 13
11 Botswana 12103 A 13 13
12 Botswana 12104 G 13 13
13 Botswana 12105 A 13 13
14 Botswana 12106 G 13 13
15 Botswana 12107 T 13 13
16 Botswana 12108 T 13 13
17 Botswana 12109 T 13 13
18 Botswana 12110 A 13 13
19 Botswana 12111 G 13 13
20 Botswana 12112 T 13 13
21 Botswana 12113 T 13 13
22 Botswana 12114 C 13 13
23 Botswana 12115 C 13 13
24 Botswana 12116 C 13 13
25 Botswana 12117 T 13 13
26 Botswana 12118 T 13 13
27 Botswana 12119 C 13 13
28 Botswana 12120 C 13 13
29 Botswana 12121 A 13 13
30 Botswana 12122 T 13 13
31 Botswana 12123 C 13 13
32 Botswana 12124 A 13 13
33 Botswana 12125 T 13 13
34 Botswana 12126 A 13 13
35 Botswana 12127 T 13 13
36 Botswana 12128 G 13 13
37 Botswana 12129 C 13 13
38 Botswana 12130 A 13 13
39 Botswana 12131 G 13 13
40 Botswana 12132 C 13 13
41 Botswana 12133 T 13 13
42 Botswana 12134 T 13 13
43 Botswana 12135 T 13 13
44 Botswana 12136 T 13 13
45 Botswana 12137 G 13 13
46 Botswana 12138 C 13 13
47 Botswana 12139 T 13 13
48 Botswana 12140 A 13 13
49 Botswana 12141 C 13 13
50 Botswana 12142 T 13 13
51 Botswana 12143 G 13 13
52 Botswana 12144 C 13 13
53 Botswana 12145 T 13 13
54 Botswana 12146 C 13 13
55 Botswana 12147 A 13 13
56 Botswana 12148 A 13 13
57 Botswana 12149 G 13 13
58 Botswana 12150 A 13 13
59 Botswana 12151 A 13 13
60 Botswana 12152 G 13 13
61 Botswana 12153 C 13 13
62 Botswana 12154 T 13 13
63 Botswana 12155 T 13 13
64 Botswana 12156 A 13 13
65 Botswana 12157 T 13 13
66 Botswana 12158 G 13 13
67 Botswana 12159 A 13 13
68 Botswana 12160 G 13 13
69 Botswana 12161 C 13 13
70 Botswana 12162 A 13 13
71 Botswana 12163 G 13 13
72 Botswana 12164 G 13 13
73 Botswana 12165 C 13 13
74 Botswana 12166 T 13 13
75 Botswana 12167 G 13 13
76 Botswana 12168 T 13 13
77 Botswana 12169 T 13 13
78 Botswana 12170 G 13 13
79 Botswana 12171 C 13 13
80 Botswana 12172 T 13 13
81 Botswana 12173 A 13 13
82 Botswana 12174 A 13 13
83 Botswana 12175 T 13 13
84 Botswana 12176 G 13 13
85 Botswana 12177 G 13 13
86 Botswana 12178 T 13 13
87 Botswana 12179 G 13 13
88 Botswana 12180 A 13 13
89 Botswana 12181 T 13 13
90 Botswana 12182 T 13 13
91 Botswana 12183 C 13 13
92 Botswana 12184 T 13 13
93 Botswana 12185 G 13 13
94 Botswana 12186 A 13 13
95 Botswana 12187 A 13 13
96 Botswana 12188 G 13 13
97 Botswana 12189 T 13 13
98 Botswana 12190 T 13 13
99 Botswana 12191 G 13 13
100 Botswana 12192 T 13 13
101 Botswana 12193 T 13 13
102 Botswana 12194 C 13 13
103 Botswana 12195 T 13 13
104 Botswana 12196 T 13 13
105 Botswana 12197 A 13 13
106 Botswana 12198 A 13 13
107 Botswana 12199 A 13 13
108 Botswana 12200 A 13 13
109 Botswana 12201 A 13 13
110 Botswana 12202 G 13 13
111 Botswana 12203 T 13 13
112 Botswana 12204 T 13 13
113 Botswana 12205 G 13 13
114 Botswana 12206 A 13 13
115 Botswana 12207 A 13 13
116 Botswana 12208 G 13 13
117 Botswana 12209 A 13 13
118 Botswana 12210 A 13 13
119 Botswana 12211 G 13 13
120 Botswana 12212 T 13 13
121 Botswana 12213 C 13 13
122 Botswana 12214 T 13 13
123 Botswana 12215 T 13 13
124 Botswana 12216 T 13 13
125 Botswana 12217 G 13 13
126 Botswana 12218 A 13 13
127 Botswana 12219 A 13 13
128 Botswana 12220 T 13 13
129 Botswana 12221 G 13 13
130 Botswana 12222 T 13 13
131 Botswana 12223 G 13 13
132 Botswana 12224 G 13 13
133 Botswana 12225 C 13 13
134 Botswana 12226 T 13 13
135 Botswana 12227 A 13 13
136 Botswana 12228 A 13 13
137 Botswana 12229 A 13 13
138 Botswana 12230 T 13 13
139 Botswana 12231 C 13 13
140 Botswana 12232 T 13 13
141 Botswana 12233 G 13 13
142 Botswana 12234 A 13 13
143 Botswana 12235 A 13 13
144 Botswana 12236 T 13 13
145 Botswana 12237 T 13 13
146 Botswana 12238 T 13 13
147 Botswana 12239 G 13 13
148 Botswana 12240 A 13 13
149 Botswana 12241 C 13 13
150 Botswana 12242 C 13 13
151 Botswana 12243 G 13 13
152 Botswana 12244 T 13 13
153 Botswana 12245 G 13 13
154 Botswana 12246 A 13 13
155 Botswana 12247 T 13 13
156 Botswana 12248 G 13 13
157 Botswana 12249 C 13 13
158 Botswana 12250 A 13 13
159 Botswana 12251 G 13 13
160 Botswana 12252 C 13 13
161 Botswana 12253 C 13 13
162 Botswana 12254 A 13 13
163 Botswana 12255 T 13 13
164 Botswana 12256 G 13 13
165 Botswana 12257 C 13 13
166 Botswana 12258 A 13 13
167 Botswana 12259 A 13 13
168 Botswana 12260 C 13 13
169 Botswana 12261 G 13 13
170 Botswana 12262 T 13 13
171 Botswana 12263 A 13 13
172 Botswana 12264 A 13 13
173 Botswana 12265 G 13 13
174 Botswana 12266 T 13 13
175 Botswana 12267 T 13 13
176 Botswana 12268 G 13 13
177 Botswana 12269 G 13 13
178 Botswana 12270 A 13 13
179 Botswana 12271 A 13 13
180 Botswana 12272 A 13 13
181 Botswana 12273 A 13 13
182 Botswana 12274 G 13 13
183 Botswana 12275 A 13 13
184 Botswana 12276 T 13 13
185 Botswana 12277 G 13 13
186 Botswana 12278 G 13 13
187 Botswana 12279 C 13 13
188 Botswana 12280 T 13 13
189 Botswana 12281 G 13 13
190 Botswana 12282 A 13 13
191 Botswana 12283 T 13 13
192 Botswana 12284 C 13 13
193 Botswana 12285 A 13 13
194 Botswana 12286 A 13 13
195 Botswana 12287 G 13 13
196 Botswana 12288 C 13 13
197 Botswana 12289 T 13 13
198 Botswana 12290 A 13 13
199 Botswana 12291 T 13 13
200 Botswana 12292 G 13 13
201 Botswana 12293 A 13 13
202 Botswana 12294 C 13 13
203 Botswana 12295 C 13 13
204 Botswana 12296 C 13 13
205 Botswana 12297 A 13 13
206 Botswana 12298 A 13 13
207 Botswana 12299 A 13 13
208 Botswana 12300 T 13 13
209 Botswana 12301 G 13 13
210 Botswana 12302 T 13 13
211 Botswana 12303 A 13 13
212 Botswana 12304 T 13 13
213 Botswana 12305 A 13 13
214 Botswana 12306 A 13 13
215 Botswana 12307 A 13 13
216 Botswana 12308 C 13 13
217 Botswana 12309 A 13 13
218 Botswana 12310 G 13 13
219 Botswana 12311 G 13 13
220 Botswana 12312 C 13 13
221 Botswana 12313 T 13 13
222 Botswana 12314 A 13 13
223 Botswana 12315 G 13 13
224 Botswana 12316 A 13 13
225 Botswana 12317 T 13 13
226 Botswana 12318 C 13 13
227 Botswana 12319 T 13 13
228 Botswana 12320 G 13 13
229 Botswana 12321 A 13 13
230 Botswana 12322 G 13 13
231 Botswana 12323 G 13 13
232 Botswana 12324 A 13 13
233 Botswana 12325 C 13 13
234 Botswana 12326 A 13 13
235 Botswana 12327 A 13 13
236 Botswana 12328 G 13 13
237 Botswana 12329 A 13 13
238 Botswana 12330 G 13 13
239 Botswana 12331 G 13 13
240 Botswana 12332 G 13 13
241 Botswana 12333 C 13 13
242 Botswana 12334 A 13 13
243 Botswana 12335 A 13 13
244 Botswana 12336 A 13 13
245 Botswana 12337 A 13 13
246 Botswana 12338 G 13 13
247 Botswana 12339 T 13 13
248 Botswana 12340 T 13 13
249 Botswana 12341 A 13 13
250 Botswana 12342 C 13 13
251 Botswana 12343 T 13 13
252 Botswana 12344 A 13 13
253 Botswana 12345 G 13 13
254 Botswana 12346 T 13 13
255 Botswana 12347 G 13 13
256 Botswana 12348 C 13 13
257 Botswana 12349 T 13 13
258 Botswana 12350 A 13 13
259 Botswana 12351 T 13 13
260 Botswana 12352 G 13 13
261 Botswana 12353 C 13 13
262 Botswana 12354 A 13 13
263 Botswana 12355 G 13 13
264 Botswana 12356 A 13 13
265 Botswana 12357 C 13 13
266 Botswana 12358 A 13 13
267 Botswana 12359 A 13 13
268 Botswana 12360 T 13 13
269 Botswana 12361 G 13 13
270 Botswana 12362 C 13 13
271 Botswana 12363 T 13 13
272 Botswana 12364 T 13 13
273 Botswana 12365 T 13 13
274 Botswana 12366 T 13 13
275 Botswana 12367 C 13 13
276 Botswana 12368 A 13 13
277 Botswana 12369 C 13 13
278 Botswana 12370 T 13 13
279 Botswana 12371 A 13 13
280 Botswana 12372 T 13 13
281 Botswana 12373 G 13 13
282 Botswana 12374 C 13 13
283 Botswana 12375 T 13 13
284 Botswana 12376 T 13 13
285 Botswana 12377 A 13 13
286 Botswana 12378 G 13 13
287 Botswana 12379 A 13 13
288 Botswana 12380 A 13 13
289 Botswana 12381 A 13 13
290 Botswana 12382 G 13 13
291 Botswana 12383 T 13 13
292 Botswana 12384 T 13 13
293 Botswana 12385 G 13 13
294 Botswana 12386 G 13 13
295 Botswana 12387 A 13 13
296 Botswana 12388 T 13 13
297 Botswana 12389 A 13 13
298 Botswana 12390 A 13 13
299 Botswana 12391 T 13 13
300 Botswana 12392 G 13 13
301 Botswana 12393 A 13 13
302 Botswana 12394 T 13 13
303 Botswana 12395 G 13 13
304 Botswana 12396 C 13 13
305 Botswana 12397 A 13 13
306 Botswana 12398 C 13 13
307 Botswana 12399 T 13 13
308 Botswana 12400 C 13 13
309 Botswana 12401 A 13 13
310 Botswana 12402 A 13 13
311 Botswana 12403 C 13 13
312 Botswana 12404 A 13 13
313 Botswana 12405 A 13 13
314 Botswana 12406 C 13 13
315 Botswana 12407 A 13 13
316 Botswana 12408 T 13 13
317 Botswana 12409 T 13 13
318 Botswana 12410 A 13 13
319 Botswana 12411 T 13 13
320 Botswana 12412 C 13 13
321 Botswana 12413 A 13 13
322 Botswana 12414 A 13 13
323 Botswana 12415 C 13 13
324 Botswana 12416 A 13 13
325 Botswana 12417 A 13 13
326 Botswana 12418 T 13 13
327 Botswana 12419 G 13 13
328 Botswana 12420 C 13 13
329 Botswana 12421 A 13 13
330 Botswana 12422 A 13 13
331 Botswana 12423 G 13 13
332 Botswana 12424 A 13 13
333 Botswana 12425 G 13 13
334 Botswana 12426 A 13 13
335 Botswana 12427 T 13 13
336 Botswana 12428 G 13 13
337 Botswana 12429 G 13 13
338 Botswana 12430 T 13 13
339 Botswana 12431 T 13 13
340 Botswana 12432 G 13 13
341 Botswana 12433 T 13 13
342 Botswana 12434 G 13 13
343 Botswana 12435 T 13 13
344 Botswana 12436 T 13 13
345 Botswana 12437 C 13 13
346 Botswana 12438 C 13 13
347 Botswana 12439 C 13 13
348 Botswana 12440 T 13 13
349 Botswana 12441 T 13 13
350 Botswana 12442 G 13 13
351 Botswana 12443 A 13 13
352 Botswana 12444 A 13 13
353 Botswana 12445 C 13 13
354 Botswana 12446 A 13 13
355 Botswana 12447 T 13 13
356 Botswana 12448 A 13 13
357 Botswana 12449 A 13 13
358 Botswana 12450 T 13 13
359 Botswana 12451 A 13 13
360 Botswana 12452 C 13 13
361 Botswana 12453 C 13 13
362 Botswana 12454 T 13 13
363 Botswana 12455 C 13 13
364 Botswana 12456 T 13 13
365 Botswana 12457 T 13 13
366 Botswana 12458 A 13 13
367 Botswana 12459 C 13 13
368 Botswana 12460 A 13 13
369 Botswana 12461 A 13 13
370 Botswana 12462 C 13 13
371 Botswana 12463 A 13 13
372 Botswana 12464 G 13 13
373 Botswana 12465 C 13 13
374 Botswana 12466 A 13 13
375 Botswana 12467 G 13 13
376 Botswana 12468 C 13 13
377 Botswana 12469 C 13 13
378 Botswana 12470 A 13 13
379 Botswana 12471 A 13 13
380 Botswana 12472 A 13 13
381 Botswana 12473 C 13 13
382 Botswana 12474 T 13 13
383 Botswana 12475 A 13 13
384 Botswana 12476 A 13 13
385 Botswana 12477 T 13 13
386 Botswana 12478 G 13 13
387 Botswana 12479 G 13 13
388 Botswana 12480 T 13 13
389 Botswana 12481 T 13 13
390 Botswana 12482 G 13 13
391 Botswana 12483 T 13 13
392 Botswana 12484 C 13 13
393 Botswana 12485 A 13 13
394 Botswana 12486 T 13 13
395 Botswana 12487 A 13 13
396 Botswana 12488 C 13 13
397 Botswana 12489 C 13 13
398 Botswana 12490 A 13 13
399 Botswana 12491 G 13 13
400 Botswana 12492 A 13 13
401 Botswana 12493 C 13 13
402 Botswana 12494 T 13 13
403 Botswana 12495 A 13 13
404 Botswana 12496 T 13 13
405 Botswana 12497 A 13 13
406 Botswana 12498 A 13 13
407 Botswana 12499 C 13 13
408 Botswana 12500 A 13 13
409 Botswana 12501 C 13 13
410 Botswana 12502 A 13 13
411 Botswana 12503 T 13 13
412 Botswana 12504 A 13 13
413 Botswana 12505 T 13 13
414 Botswana 12506 A 13 13
415 Botswana 12507 A 13 13
416 Botswana 12508 A 13 13
417 Botswana 12509 A 13 13
418 Botswana 12510 A 13 13
419 Botswana 12511 T 13 13
420 Botswana 12512 A 13 13
421 Botswana 12513 C 13 13
422 Botswana 12514 G 13 13
423 Botswana 12515 T 13 13
424 Botswana 12516 G 13 13
425 Botswana 12517 T 13 13
426 Botswana 12518 G 13 13
427 Botswana 12519 A 13 13
428 Botswana 12520 T 13 13
429 Botswana 12521 G 13 13
430 Botswana 12522 G 13 13
431 Botswana 12523 T 13 13
432 Botswana 12524 A 13 13
433 Botswana 12525 C 13 13
434 Botswana 12526 A 13 13
435 Botswana 12527 A 13 13
436 Botswana 12528 C 13 13
437 Botswana 12529 A 13 13
438 Botswana 12530 T 13 13
439 Botswana 12531 T 13 13
440 Botswana 12532 T 13 13
441 Botswana 12533 A 13 13
442 Botswana 12534 C 13 13
443 Botswana 12535 T 13 13
444 Botswana 12536 T 13 13
445 Botswana 12537 A 13 13
446 Botswana 12538 T 13 13
447 Botswana 12539 G 13 13
448 Botswana 12540 C 13 13
449 Botswana 12541 A 13 13
450 Botswana 12542 T 13 13
451 Botswana 12543 C 13 13
452 Botswana 12544 A 13 13
453 Botswana 12545 G 13 13
454 Botswana 12546 C 13 13
455 Botswana 12547 A 13 13
456 Botswana 12548 T 13 13
457 Botswana 12549 T 13 13
458 Botswana 12550 G 13 13
459 Botswana 12551 T 13 13
460 Botswana 12552 G 13 13
461 Botswana 12553 G 13 13
462 Botswana 12554 G 13 13
463 Botswana 12555 A 13 13
464 Botswana 12556 A 13 13
465 Botswana 12557 A 13 13
466 Botswana 12558 T 13 13
467 Botswana 12559 C 13 13
468 Botswana 12560 C 13 13
469 Botswana 12561 A 13 13
470 Botswana 12562 A 13 13
471 Botswana 12563 C 13 13
472 Botswana 12564 A 13 13
473 Botswana 12565 G 13 13
474 Botswana 12566 G 13 13
475 Botswana 12567 T 13 13
476 Botswana 12568 T 13 13
477 Botswana 12569 G 13 13
478 Botswana 12570 T 13 13
479 Botswana 12571 A 13 13
480 Botswana 12572 G 13 13
481 Botswana 12573 A 13 13
482 Botswana 12574 T 13 13
483 Botswana 12575 G 13 13
484 Botswana 12576 C 13 13
485 Botswana 12577 A 13 13
486 Botswana 12578 G 13 13
487 Botswana 12579 A 13 13
488 Botswana 12580 T 13 13
489 Botswana 12581 A 13 13
490 Botswana 12582 G 13 13
491 Botswana 12583 T 13 13
492 Botswana 12584 A 13 13
493 Botswana 12585 A 13 13
494 Botswana 12586 A 13 13
495 Botswana 12587 A 13 13
496 Botswana 12588 T 13 13
497 Botswana 12589 T 13 13
498 Botswana 12590 G 13 13
499 Botswana 12591 T 13 13
500 Botswana 12592 T 13 13
501 Botswana 12593 C 13 13
502 Botswana 12594 A 13 13
503 Botswana 12595 A 13 13
504 Botswana 12596 C 13 13
505 Botswana 12597 T 13 13
506 Botswana 12598 T 13 13
507 Botswana 12599 A 13 13
508 Botswana 12600 G 13 13
509 Botswana 12601 T 13 13
510 Botswana 12602 G 13 13
511 Botswana 12603 A 13 13
512 Botswana 12604 A 13 13
513 Botswana 12605 A 13 13
514 Botswana 12606 T 13 13
515 Botswana 12607 T 13 13
516 Botswana 12608 A 13 13
517 Botswana 12609 G 13 13
518 Botswana 12610 T 13 13
519 Botswana 12611 A 13 13
520 Botswana 12612 T 13 13
521 Botswana 12613 G 13 13
522 Botswana 12614 G 13 13
523 Botswana 12615 A 13 13
524 Botswana 12616 C 13 13
525 Botswana 12617 A 13 13
526 Botswana 12618 A 13 13
527 Botswana 12619 T 13 13
528 Botswana 12620 T 13 13
529 Botswana 12621 C 13 13
530 Botswana 12622 A 13 13
531 Botswana 12623 C 13 13
532 Botswana 12624 C 13 13
533 Botswana 12625 T 13 13
534 Botswana 12626 A 13 13
535 Botswana 12627 A 13 13
536 Botswana 12628 T 13 13
537 Botswana 12629 T 13 13
538 Botswana 12630 T 13 13
539 Botswana 12631 A 13 13
540 Botswana 12632 G 13 13
541 Botswana 12633 C 13 13
542 Botswana 12634 A 13 13
543 Botswana 12635 T 13 13
544 Botswana 12636 G 13 13
545 Botswana 12637 G 13 13
546 Botswana 12638 C 13 13
547 Botswana 12639 C 13 13
548 Botswana 12640 T 13 13
549 Botswana 12641 C 13 13
550 Botswana 12642 T 13 13
551 Botswana 12643 T 13 13
552 Botswana 12644 A 13 13
553 Botswana 12645 T 13 13
554 Botswana 12646 T 13 13
555 Botswana 12647 G 13 13
556 Botswana 12648 T 13 13
557 Botswana 12649 A 13 13
558 Botswana 12650 A 13 13
559 Botswana 12651 C 13 13
560 Botswana 12652 A 13 13
561 Botswana 12653 G 13 13
562 Botswana 12654 C 13 13
563 Botswana 12655 T 13 13
564 Botswana 12656 T 13 13
565 Botswana 12657 T 13 13
566 Botswana 12658 A 13 13
567 Botswana 12659 A 13 13
568 Botswana 12660 G 13 13
569 Botswana 12661 G 13 13
570 Botswana 12662 G 13 13
571 Botswana 12663 C 13 13
572 Botswana 12664 C 13 13
573 Botswana 12665 A 13 13
574 Botswana 12666 A 13 13
575 Botswana 12667 T 13 13
576 Botswana 12668 T 13 13
577 Botswana 12669 C 13 13
578 Botswana 12670 T 13 13
579 Botswana 12671 G 13 13
580 Botswana 12672 C 13 13
581 Botswana 12673 T 13 13
582 Botswana 12674 G 13 13
583 Botswana 12675 T 13 13
584 Botswana 12676 C 13 13
585 Botswana 12677 A 13 13
586 Botswana 12678 A 13 13
587 Botswana 12679 A 13 13
588 Botswana 12680 T 13 13
589 Botswana 12681 T 13 13
590 Botswana 12682 A 13 13
591 Botswana 12683 C 13 13
592 Botswana 12684 A 13 13
593 Botswana 12685 G 13 13