National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84                                      
C   6                                      
D   39                                      
E   27                                      
F   15                                      
G   9                                      
I   30                                      
K   45                                      
L   54                                      
M   27                                      
N   39                                      
P   18                                      
Q   33                                      
R   21                                      
S   45                                      
T   39                                      
V   39                                      
W   6                                      
Y   18                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Benin 12092 G 12 12
1 Benin 12093 C 12 12
2 Benin 12094 T 12 12
3 Benin 12095 A 12 12
4 Benin 12096 T 12 12
5 Benin 12097 A 12 12
6 Benin 12098 G 12 12
7 Benin 12099 C 12 12
8 Benin 12100 C 12 12
9 Benin 12101 T 12 12
10 Benin 12102 C 12 12
11 Benin 12103 A 12 12
12 Benin 12104 G 12 12
13 Benin 12105 A 12 12
14 Benin 12106 G 12 12
15 Benin 12107 T 12 12
16 Benin 12108 T 12 12
17 Benin 12109 T 12 12
18 Benin 12110 A 12 12
19 Benin 12111 G 12 12
20 Benin 12112 T 12 12
21 Benin 12113 T 12 12
22 Benin 12114 C 12 12
23 Benin 12115 C 12 12
24 Benin 12116 C 12 12
25 Benin 12117 T 12 12
26 Benin 12118 T 12 12
27 Benin 12119 C 12 12
28 Benin 12120 C 12 12
29 Benin 12121 A 12 12
30 Benin 12122 T 12 12
31 Benin 12123 C 12 12
32 Benin 12124 A 12 12
33 Benin 12125 T 12 12
34 Benin 12126 A 12 12
35 Benin 12127 T 12 12
36 Benin 12128 G 12 12
37 Benin 12129 C 12 12
38 Benin 12130 A 12 12
39 Benin 12131 G 12 12
40 Benin 12132 C 12 12
41 Benin 12133 T 12 12
42 Benin 12134 T 12 12
43 Benin 12135 T 12 12
44 Benin 12136 T 12 12
45 Benin 12137 G 12 12
46 Benin 12138 C 12 12
47 Benin 12139 T 12 12
48 Benin 12140 A 12 12
49 Benin 12141 C 12 12
50 Benin 12142 T 12 12
51 Benin 12143 G 12 12
52 Benin 12144 C 12 12
53 Benin 12145 T 12 12
54 Benin 12146 C 12 12
55 Benin 12147 A 12 12
56 Benin 12148 A 12 12
57 Benin 12149 G 12 12
58 Benin 12150 A 12 12
59 Benin 12151 A 12 12
60 Benin 12152 G 12 12
61 Benin 12153 C 12 12
62 Benin 12154 T 12 12
63 Benin 12155 T 12 12
64 Benin 12156 A 12 12
65 Benin 12157 T 12 12
66 Benin 12158 G 12 12
67 Benin 12159 A 12 12
68 Benin 12160 G 12 12
69 Benin 12161 C 12 12
70 Benin 12162 A 12 12
71 Benin 12163 G 12 12
72 Benin 12164 G 12 12
73 Benin 12165 C 12 12
74 Benin 12166 T 12 12
75 Benin 12167 G 12 12
76 Benin 12168 T 12 12
77 Benin 12169 T 12 12
78 Benin 12170 G 12 12
79 Benin 12171 C 12 12
80 Benin 12172 T 12 12
81 Benin 12173 A 12 12
82 Benin 12174 A 12 12
83 Benin 12175 T 12 12
84 Benin 12176 G 12 12
85 Benin 12177 G 12 12
86 Benin 12178 T 12 12
87 Benin 12179 G 12 12
88 Benin 12180 A 12 12
89 Benin 12181 T 12 12
90 Benin 12182 T 12 12
91 Benin 12183 C 12 12
92 Benin 12184 T 12 12
93 Benin 12185 G 12 12
94 Benin 12186 A 12 12
95 Benin 12187 A 12 12
96 Benin 12188 G 12 12
97 Benin 12189 T 12 12
98 Benin 12190 T 12 12
99 Benin 12191 G 12 12
100 Benin 12192 T 12 12
101 Benin 12193 T 12 12
102 Benin 12194 C 12 12
103 Benin 12195 T 12 12
104 Benin 12196 T 12 12
105 Benin 12197 A 12 12
106 Benin 12198 A 12 12
107 Benin 12199 A 12 12
108 Benin 12200 A 12 12
109 Benin 12201 A 12 12
110 Benin 12202 G 12 12
111 Benin 12203 T 12 12
112 Benin 12204 T 12 12
113 Benin 12205 G 12 12
114 Benin 12206 A 12 12
115 Benin 12207 A 12 12
116 Benin 12208 G 12 12
117 Benin 12209 A 12 12
118 Benin 12210 A 12 12
119 Benin 12211 G 12 12
120 Benin 12212 T 12 12
121 Benin 12213 C 12 12
122 Benin 12214 T 12 12
123 Benin 12215 T 12 12
124 Benin 12216 T 12 12
125 Benin 12217 G 12 12
126 Benin 12218 A 12 12
127 Benin 12219 A 12 12
128 Benin 12220 T 12 12
129 Benin 12221 G 12 12
130 Benin 12222 T 12 12
131 Benin 12223 G 12 12
132 Benin 12224 G 12 12
133 Benin 12225 C 12 12
134 Benin 12226 T 12 12
135 Benin 12227 A 12 12
136 Benin 12228 A 12 12
137 Benin 12229 A 12 12
138 Benin 12230 T 12 12
139 Benin 12231 C 12 12
140 Benin 12232 T 12 12
141 Benin 12233 G 12 12
142 Benin 12234 A 12 12
143 Benin 12235 A 12 12
144 Benin 12236 T 12 12
145 Benin 12237 T 12 12
146 Benin 12238 T 12 12
147 Benin 12239 G 12 12
148 Benin 12240 A 12 12
149 Benin 12241 C 12 12
150 Benin 12242 C 12 12
151 Benin 12243 G 12 12
152 Benin 12244 T 12 12
153 Benin 12245 G 12 12
154 Benin 12246 A 12 12
155 Benin 12247 T 12 12
156 Benin 12248 G 12 12
157 Benin 12249 C 12 12
158 Benin 12250 A 12 12
159 Benin 12251 G 12 12
160 Benin 12252 C 12 12
161 Benin 12253 C 12 12
162 Benin 12254 A 12 12
163 Benin 12255 T 12 12
164 Benin 12256 G 12 12
165 Benin 12257 C 12 12
166 Benin 12258 A 12 12
167 Benin 12259 A 12 12
168 Benin 12260 C 12 12
169 Benin 12261 G 12 12
170 Benin 12262 T 12 12
171 Benin 12263 A 12 12
172 Benin 12264 A 12 12
173 Benin 12265 G 12 12
174 Benin 12266 T 12 12
175 Benin 12267 T 12 12
176 Benin 12268 G 12 12
177 Benin 12269 G 12 12
178 Benin 12270 A 12 12
179 Benin 12271 A 12 12
180 Benin 12272 A 12 12
181 Benin 12273 A 12 12
182 Benin 12274 G 12 12
183 Benin 12275 A 12 12
184 Benin 12276 T 12 12
185 Benin 12277 G 12 12
186 Benin 12278 G 12 12
187 Benin 12279 C 12 12
188 Benin 12280 T 12 12
189 Benin 12281 G 12 12
190 Benin 12282 A 12 12
191 Benin 12283 T 12 12
192 Benin 12284 C 12 12
193 Benin 12285 A 12 12
194 Benin 12286 A 12 12
195 Benin 12287 G 12 12
196 Benin 12288 C 12 12
197 Benin 12289 T 12 12
198 Benin 12290 A 12 12
199 Benin 12291 T 12 12
200 Benin 12292 G 12 12
201 Benin 12293 A 12 12
202 Benin 12294 C 12 12
203 Benin 12295 C 12 12
204 Benin 12296 C 12 12
205 Benin 12297 A 12 12
206 Benin 12298 A 12 12
207 Benin 12299 A 12 12
208 Benin 12300 T 12 12
209 Benin 12301 G 12 12
210 Benin 12302 T 12 12
211 Benin 12303 A 12 12
212 Benin 12304 T 12 12
213 Benin 12305 A 12 12
214 Benin 12306 A 12 12
215 Benin 12307 A 12 12
216 Benin 12308 C 12 12
217 Benin 12309 A 12 12
218 Benin 12310 G 12 12
219 Benin 12311 G 12 12
220 Benin 12312 C 12 12
221 Benin 12313 T 12 12
222 Benin 12314 A 12 12
223 Benin 12315 G 12 12
224 Benin 12316 A 12 12
225 Benin 12317 T 12 12
226 Benin 12318 C 12 12
227 Benin 12319 T 12 12
228 Benin 12320 G 12 12
229 Benin 12321 A 12 12
230 Benin 12322 G 12 12
231 Benin 12323 G 12 12
232 Benin 12324 A 12 12
233 Benin 12325 C 12 12
234 Benin 12326 A 12 12
235 Benin 12327 A 12 12
236 Benin 12328 G 12 12
237 Benin 12329 A 12 12
238 Benin 12330 G 12 12
239 Benin 12331 G 12 12
240 Benin 12332 G 12 12
241 Benin 12333 C 12 12
242 Benin 12334 A 12 12
243 Benin 12335 A 12 12
244 Benin 12336 A 12 12
245 Benin 12337 A 12 12
246 Benin 12338 G 12 12
247 Benin 12339 T 12 12
248 Benin 12340 T 12 12
249 Benin 12341 A 12 12
250 Benin 12342 C 12 12
251 Benin 12343 T 12 12
252 Benin 12344 A 12 12
253 Benin 12345 G 12 12
254 Benin 12346 T 12 12
255 Benin 12347 G 12 12
256 Benin 12348 C 12 12
257 Benin 12349 T 12 12
258 Benin 12350 A 12 12
259 Benin 12351 T 12 12
260 Benin 12352 G 12 12
261 Benin 12353 C 12 12
262 Benin 12354 A 12 12
263 Benin 12355 G 12 12
264 Benin 12356 A 12 12
265 Benin 12357 C 12 12
266 Benin 12358 A 12 12
267 Benin 12359 A 12 12
268 Benin 12360 T 12 12
269 Benin 12361 G 12 12
270 Benin 12362 C 12 12
271 Benin 12363 T 12 12
272 Benin 12364 T 12 12
273 Benin 12365 T 12 12
274 Benin 12366 T 12 12
275 Benin 12367 C 12 12
276 Benin 12368 A 12 12
277 Benin 12369 C 12 12
278 Benin 12370 T 12 12
279 Benin 12371 A 12 12
280 Benin 12372 T 12 12
281 Benin 12373 G 12 12
282 Benin 12374 C 12 12
283 Benin 12375 T 12 12
284 Benin 12376 T 12 12
285 Benin 12377 A 12 12
286 Benin 12378 G 12 12
287 Benin 12379 A 12 12
288 Benin 12380 A 12 12
289 Benin 12381 A 12 12
290 Benin 12382 G 12 12
291 Benin 12383 T 12 12
292 Benin 12384 T 12 12
293 Benin 12385 G 12 12
294 Benin 12386 G 12 12
295 Benin 12387 A 12 12
296 Benin 12388 T 12 12
297 Benin 12389 A 12 12
298 Benin 12390 A 12 12
299 Benin 12391 T 12 12
300 Benin 12392 G 12 12
301 Benin 12393 A 12 12
302 Benin 12394 T 12 12
303 Benin 12395 G 12 12
304 Benin 12396 C 12 12
305 Benin 12397 A 12 12
306 Benin 12398 C 12 12
307 Benin 12399 T 12 12
308 Benin 12400 C 12 12
309 Benin 12401 A 12 12
310 Benin 12402 A 12 12
311 Benin 12403 C 12 12
312 Benin 12404 A 12 12
313 Benin 12405 A 12 12
314 Benin 12406 C 12 12
315 Benin 12407 A 12 12
316 Benin 12408 T 12 12
317 Benin 12409 T 12 12
318 Benin 12410 A 12 12
319 Benin 12411 T 12 12
320 Benin 12412 C 12 12
321 Benin 12413 A 12 12
322 Benin 12414 A 12 12
323 Benin 12415 C 12 12
324 Benin 12416 A 12 12
325 Benin 12417 A 12 12
326 Benin 12418 T 12 12
327 Benin 12419 G 12 12
328 Benin 12420 C 12 12
329 Benin 12421 A 12 12
330 Benin 12422 A 12 12
331 Benin 12423 G 12 12
332 Benin 12424 A 12 12
333 Benin 12425 G 12 12
334 Benin 12426 A 12 12
335 Benin 12427 T 12 12
336 Benin 12428 G 12 12
337 Benin 12429 G 12 12
338 Benin 12430 T 12 12
339 Benin 12431 T 12 12
340 Benin 12432 G 12 12
341 Benin 12433 T 12 12
342 Benin 12434 G 12 12
343 Benin 12435 T 12 12
344 Benin 12436 T 12 12
345 Benin 12437 C 12 12
346 Benin 12438 C 12 12
347 Benin 12439 C 12 12
348 Benin 12440 T 12 12
349 Benin 12441 T 12 12
350 Benin 12442 G 12 12
351 Benin 12443 A 12 12
352 Benin 12444 A 12 12
353 Benin 12445 C 12 12
354 Benin 12446 A 12 12
355 Benin 12447 T 12 12
356 Benin 12448 A 12 12
357 Benin 12449 A 12 12
358 Benin 12450 T 12 12
359 Benin 12451 A 12 12
360 Benin 12452 C 12 12
361 Benin 12453 C 12 12
362 Benin 12454 T 12 12
363 Benin 12455 C 12 12
364 Benin 12456 T 12 12
365 Benin 12457 T 12 12
366 Benin 12458 A 12 12
367 Benin 12459 C 12 12
368 Benin 12460 A 12 12
369 Benin 12461 A 12 12
370 Benin 12462 C 12 12
371 Benin 12463 A 12 12
372 Benin 12464 G 12 12
373 Benin 12465 C 12 12
374 Benin 12466 A 12 12
375 Benin 12467 G 12 12
376 Benin 12468 C 12 12
377 Benin 12469 C 12 12
378 Benin 12470 A 12 12
379 Benin 12471 A 12 12
380 Benin 12472 A 12 12
381 Benin 12473 C 12 12
382 Benin 12474 T 12 12
383 Benin 12475 A 12 12
384 Benin 12476 A 12 12
385 Benin 12477 T 12 12
386 Benin 12478 G 12 12
387 Benin 12479 G 12 12
388 Benin 12480 T 12 12
389 Benin 12481 T 12 12
390 Benin 12482 G 12 12
391 Benin 12483 T 12 12
392 Benin 12484 C 12 12
393 Benin 12485 A 12 12
394 Benin 12486 T 12 12
395 Benin 12487 A 12 12
396 Benin 12488 C 12 12
397 Benin 12489 C 12 12
398 Benin 12490 A 12 12
399 Benin 12491 G 12 12
400 Benin 12492 A 12 12
401 Benin 12493 C 12 12
402 Benin 12494 T 12 12
403 Benin 12495 A 12 12
404 Benin 12496 T 12 12
405 Benin 12497 A 12 12
406 Benin 12498 A 12 12
407 Benin 12499 C 12 12
408 Benin 12500 A 12 12
409 Benin 12501 C 12 12
410 Benin 12502 A 12 12
411 Benin 12503 T 12 12
412 Benin 12504 A 12 12
413 Benin 12505 T 12 12
414 Benin 12506 A 12 12
415 Benin 12507 A 12 12
416 Benin 12508 A 12 12
417 Benin 12509 A 12 12
418 Benin 12510 A 12 12
419 Benin 12511 T 12 12
420 Benin 12512 A 12 12
421 Benin 12513 C 12 12
422 Benin 12514 G 12 12
423 Benin 12515 T 12 12
424 Benin 12516 G 12 12
425 Benin 12517 T 12 12
426 Benin 12518 G 12 12
427 Benin 12519 A 12 12
428 Benin 12520 T 12 12
429 Benin 12521 G 12 12
430 Benin 12522 G 12 12
431 Benin 12523 T 12 12
432 Benin 12524 A 12 12
433 Benin 12525 C 12 12
434 Benin 12526 A 12 12
435 Benin 12527 A 12 12
436 Benin 12528 C 12 12
437 Benin 12529 A 12 12
438 Benin 12530 T 12 12
439 Benin 12531 T 12 12
440 Benin 12532 T 12 12
441 Benin 12533 A 12 12
442 Benin 12534 C 12 12
443 Benin 12535 T 12 12
444 Benin 12536 T 12 12
445 Benin 12537 A 12 12
446 Benin 12538 T 12 12
447 Benin 12539 G 12 12
448 Benin 12540 C 12 12
449 Benin 12541 A 12 12
450 Benin 12542 T 12 12
451 Benin 12543 C 12 12
452 Benin 12544 A 12 12
453 Benin 12545 G 12 12
454 Benin 12546 C 12 12
455 Benin 12547 A 12 12
456 Benin 12548 T 12 12
457 Benin 12549 T 12 12
458 Benin 12550 G 12 12
459 Benin 12551 T 12 12
460 Benin 12552 G 12 12
461 Benin 12553 G 12 12
462 Benin 12554 G 12 12
463 Benin 12555 A 12 12
464 Benin 12556 A 12 12
465 Benin 12557 A 12 12
466 Benin 12558 T 12 12
467 Benin 12559 C 12 12
468 Benin 12560 C 12 12
469 Benin 12561 A 12 12
470 Benin 12562 A 12 12
471 Benin 12563 C 12 12
472 Benin 12564 A 12 12
473 Benin 12565 G 12 12
474 Benin 12566 G 12 12
475 Benin 12567 T 12 12
476 Benin 12568 T 12 12
477 Benin 12569 G 12 12
478 Benin 12570 T 12 12
479 Benin 12571 A 12 12
480 Benin 12572 G 12 12
481 Benin 12573 A 12 12
482 Benin 12574 T 12 12
483 Benin 12575 G 12 12
484 Benin 12576 C 12 12
485 Benin 12577 A 12 12
486 Benin 12578 G 12 12
487 Benin 12579 A 12 12
488 Benin 12580 T 12 12
489 Benin 12581 A 12 12
490 Benin 12582 G 12 12
491 Benin 12583 T 12 12
492 Benin 12584 A 12 12
493 Benin 12585 A 12 12
494 Benin 12586 A 12 12
495 Benin 12587 A 12 12
496 Benin 12588 T 12 12
497 Benin 12589 T 12 12
498 Benin 12590 G 12 12
499 Benin 12591 T 12 12
500 Benin 12592 T 12 12
501 Benin 12593 C 12 12
502 Benin 12594 A 12 12
503 Benin 12595 A 12 12
504 Benin 12596 C 12 12
505 Benin 12597 T 12 12
506 Benin 12598 T 12 12
507 Benin 12599 A 12 12
508 Benin 12600 G 12 12
509 Benin 12601 T 12 12
510 Benin 12602 G 12 12
511 Benin 12603 A 12 12
512 Benin 12604 A 12 12
513 Benin 12605 A 12 12
514 Benin 12606 T 12 12
515 Benin 12607 T 12 12
516 Benin 12608 A 12 12
517 Benin 12609 G 12 12
518 Benin 12610 T 12 12
519 Benin 12611 A 12 12
520 Benin 12612 T 12 12
521 Benin 12613 G 12 12
522 Benin 12614 G 12 12
523 Benin 12615 A 12 12
524 Benin 12616 C 12 12
525 Benin 12617 A 12 12
526 Benin 12618 A 12 12
527 Benin 12619 T 12 12
528 Benin 12620 T 12 12
529 Benin 12621 C 12 12
530 Benin 12622 A 12 12
531 Benin 12623 C 12 12
532 Benin 12624 C 12 12
533 Benin 12625 T 12 12
534 Benin 12626 A 12 12
535 Benin 12627 A 12 12
536 Benin 12628 T 12 12
537 Benin 12629 T 12 12
538 Benin 12630 T 12 12
539 Benin 12631 A 12 12
540 Benin 12632 G 12 12
541 Benin 12633 C 12 12
542 Benin 12634 A 12 12
543 Benin 12635 T 12 12
544 Benin 12636 G 12 12
545 Benin 12637 G 12 12
546 Benin 12638 C 12 12
547 Benin 12639 C 12 12
548 Benin 12640 T 12 12
549 Benin 12641 C 12 12
550 Benin 12642 T 12 12
551 Benin 12643 T 12 12
552 Benin 12644 A 12 12
553 Benin 12645 T 12 12
554 Benin 12646 T 12 12
555 Benin 12647 G 12 12
556 Benin 12648 T 12 12
557 Benin 12649 A 12 12
558 Benin 12650 A 12 12
559 Benin 12651 C 12 12
560 Benin 12652 A 12 12
561 Benin 12653 G 12 12
562 Benin 12654 C 12 12
563 Benin 12655 T 12 12
564 Benin 12656 T 12 12
565 Benin 12657 T 12 12
566 Benin 12658 A 12 12
567 Benin 12659 A 12 12
568 Benin 12660 G 12 12
569 Benin 12661 G 12 12
570 Benin 12662 G 12 12
571 Benin 12663 C 12 12
572 Benin 12664 C 12 12
573 Benin 12665 A 12 12
574 Benin 12666 A 12 12
575 Benin 12667 T 12 12
576 Benin 12668 T 12 12
577 Benin 12669 C 12 12
578 Benin 12670 T 12 12
579 Benin 12671 G 12 12
580 Benin 12672 C 12 12
581 Benin 12673 T 12 12
582 Benin 12674 G 12 12
583 Benin 12675 T 12 12
584 Benin 12676 C 12 12
585 Benin 12677 A 12 12
586 Benin 12678 A 12 12
587 Benin 12679 A 12 12
588 Benin 12680 T 12 12
589 Benin 12681 T 12 12
590 Benin 12682 A 12 12
591 Benin 12683 C 12 12
592 Benin 12684 A 12 12
593 Benin 12685 G 12 12