National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   594                                      
?                                          
A   84                                      
C   6                                      
D   39                                      
E   27                                      
F   15                                      
G   9                                      
I   30                                      
K   45                                      
L   54                                      
M   27                                      
N   39                                      
P   18                                      
Q   33                                      
R   21                                      
S   45                                      
T   39                                      
V   39                                      
W   6                                      
Y   18                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Armenia 12092 G 3 3
1 Armenia 12093 C 3 3
2 Armenia 12094 T 3 3
3 Armenia 12095 A 3 3
4 Armenia 12096 T 3 3
5 Armenia 12097 A 3 3
6 Armenia 12098 G 3 3
7 Armenia 12099 C 3 3
8 Armenia 12100 C 3 3
9 Armenia 12101 T 3 3
10 Armenia 12102 C 3 3
11 Armenia 12103 A 3 3
12 Armenia 12104 G 3 3
13 Armenia 12105 A 3 3
14 Armenia 12106 G 3 3
15 Armenia 12107 T 3 3
16 Armenia 12108 T 3 3
17 Armenia 12109 T 3 3
18 Armenia 12110 A 3 3
19 Armenia 12111 G 3 3
20 Armenia 12112 T 3 3
21 Armenia 12113 T 3 3
22 Armenia 12114 C 3 3
23 Armenia 12115 C 3 3
24 Armenia 12116 C 3 3
25 Armenia 12117 T 3 3
26 Armenia 12118 T 3 3
27 Armenia 12119 C 3 3
28 Armenia 12120 C 3 3
29 Armenia 12121 A 3 3
30 Armenia 12122 T 3 3
31 Armenia 12123 C 3 3
32 Armenia 12124 A 3 3
33 Armenia 12125 T 3 3
34 Armenia 12126 A 3 3
35 Armenia 12127 T 3 3
36 Armenia 12128 G 3 3
37 Armenia 12129 C 3 3
38 Armenia 12130 A 3 3
39 Armenia 12131 G 3 3
40 Armenia 12132 C 3 3
41 Armenia 12133 T 3 3
42 Armenia 12134 T 3 3
43 Armenia 12135 T 3 3
44 Armenia 12136 T 3 3
45 Armenia 12137 G 3 3
46 Armenia 12138 C 3 3
47 Armenia 12139 T 3 3
48 Armenia 12140 A 3 3
49 Armenia 12141 C 3 3
50 Armenia 12142 T 3 3
51 Armenia 12143 G 3 3
52 Armenia 12144 C 3 3
53 Armenia 12145 T 3 3
54 Armenia 12146 C 3 3
55 Armenia 12147 A 3 3
56 Armenia 12148 A 3 3
57 Armenia 12149 G 3 3
58 Armenia 12150 A 3 3
59 Armenia 12151 A 3 3
60 Armenia 12152 G 3 3
61 Armenia 12153 C 3 3
62 Armenia 12154 T 3 3
63 Armenia 12155 T 3 3
64 Armenia 12156 A 3 3
65 Armenia 12157 T 3 3
66 Armenia 12158 G 3 3
67 Armenia 12159 A 3 3
68 Armenia 12160 G 3 3
69 Armenia 12161 C 3 3
70 Armenia 12162 A 3 3
71 Armenia 12163 G 3 3
72 Armenia 12164 G 3 3
73 Armenia 12165 C 3 3
74 Armenia 12166 T 3 3
75 Armenia 12167 G 3 3
76 Armenia 12168 T 3 3
77 Armenia 12169 T 3 3
78 Armenia 12170 G 3 3
79 Armenia 12171 C 3 3
80 Armenia 12172 T 3 3
81 Armenia 12173 A 3 3
82 Armenia 12174 A 3 3
83 Armenia 12175 T 3 3
84 Armenia 12176 G 3 3
85 Armenia 12177 G 3 3
86 Armenia 12178 T 3 3
87 Armenia 12179 G 3 3
88 Armenia 12180 A 3 3
89 Armenia 12181 T 3 3
90 Armenia 12182 T 3 3
91 Armenia 12183 C 3 3
92 Armenia 12184 T 3 3
93 Armenia 12185 G 3 3
94 Armenia 12186 A 3 3
95 Armenia 12187 A 3 3
96 Armenia 12188 G 3 3
97 Armenia 12189 T 3 3
98 Armenia 12190 T 3 3
99 Armenia 12191 G 3 3
100 Armenia 12192 T 3 3
101 Armenia 12193 T 3 3
102 Armenia 12194 C 3 3
103 Armenia 12195 T 3 3
104 Armenia 12196 T 3 3
105 Armenia 12197 A 3 3
106 Armenia 12198 A 3 3
107 Armenia 12199 A 3 3
108 Armenia 12200 A 3 3
109 Armenia 12201 A 3 3
110 Armenia 12202 G 3 3
111 Armenia 12203 T 3 3
112 Armenia 12204 T 3 3
113 Armenia 12205 G 3 3
114 Armenia 12206 A 3 3
115 Armenia 12207 A 3 3
116 Armenia 12208 G 3 3
117 Armenia 12209 A 3 3
118 Armenia 12210 A 3 3
119 Armenia 12211 G 3 3
120 Armenia 12212 T 3 3
121 Armenia 12213 C 3 3
122 Armenia 12214 T 3 3
123 Armenia 12215 T 3 3
124 Armenia 12216 T 3 3
125 Armenia 12217 G 3 3
126 Armenia 12218 A 3 3
127 Armenia 12219 A 3 3
128 Armenia 12220 T 3 3
129 Armenia 12221 G 3 3
130 Armenia 12222 T 3 3
131 Armenia 12223 G 3 3
132 Armenia 12224 G 3 3
133 Armenia 12225 C 3 3
134 Armenia 12226 T 3 3
135 Armenia 12227 A 3 3
136 Armenia 12228 A 3 3
137 Armenia 12229 A 3 3
138 Armenia 12230 T 3 3
139 Armenia 12231 C 3 3
140 Armenia 12232 T 3 3
141 Armenia 12233 G 3 3
142 Armenia 12234 A 3 3
143 Armenia 12235 A 3 3
144 Armenia 12236 T 3 3
145 Armenia 12237 T 3 3
146 Armenia 12238 T 3 3
147 Armenia 12239 G 3 3
148 Armenia 12240 A 3 3
149 Armenia 12241 C 3 3
150 Armenia 12242 C 3 3
151 Armenia 12243 G 3 3
152 Armenia 12244 T 3 3
153 Armenia 12245 G 3 3
154 Armenia 12246 A 3 3
155 Armenia 12247 T 3 3
156 Armenia 12248 G 3 3
157 Armenia 12249 C 3 3
158 Armenia 12250 A 3 3
159 Armenia 12251 G 3 3
160 Armenia 12252 C 3 3
161 Armenia 12253 C 3 3
162 Armenia 12254 A 3 3
163 Armenia 12255 T 3 3
164 Armenia 12256 G 3 3
165 Armenia 12257 C 3 3
166 Armenia 12258 A 3 3
167 Armenia 12259 A 3 3
168 Armenia 12260 C 3 3
169 Armenia 12261 G 3 3
170 Armenia 12262 T 3 3
171 Armenia 12263 A 3 3
172 Armenia 12264 A 3 3
173 Armenia 12265 G 3 3
174 Armenia 12266 T 3 3
175 Armenia 12267 T 3 3
176 Armenia 12268 G 3 3
177 Armenia 12269 G 3 3
178 Armenia 12270 A 3 3
179 Armenia 12271 A 3 3
180 Armenia 12272 A 3 3
181 Armenia 12273 A 3 3
182 Armenia 12274 G 3 3
183 Armenia 12275 A 3 3
184 Armenia 12276 T 3 3
185 Armenia 12277 G 3 3
186 Armenia 12278 G 3 3
187 Armenia 12279 C 3 3
188 Armenia 12280 T 3 3
189 Armenia 12281 G 3 3
190 Armenia 12282 A 3 3
191 Armenia 12283 T 3 3
192 Armenia 12284 C 3 3
193 Armenia 12285 A 3 3
194 Armenia 12286 A 3 3
195 Armenia 12287 G 3 3
196 Armenia 12288 C 3 3
197 Armenia 12289 T 3 3
198 Armenia 12290 A 3 3
199 Armenia 12291 T 3 3
200 Armenia 12292 G 3 3
201 Armenia 12293 A 3 3
202 Armenia 12294 C 3 3
203 Armenia 12295 C 3 3
204 Armenia 12296 C 3 3
205 Armenia 12297 A 3 3
206 Armenia 12298 A 3 3
207 Armenia 12299 A 3 3
208 Armenia 12300 T 3 3
209 Armenia 12301 G 3 3
210 Armenia 12302 T 3 3
211 Armenia 12303 A 3 3
212 Armenia 12304 T 3 3
213 Armenia 12305 A 3 3
214 Armenia 12306 A 3 3
215 Armenia 12307 A 3 3
216 Armenia 12308 C 3 3
217 Armenia 12309 A 3 3
218 Armenia 12310 G 3 3
219 Armenia 12311 G 3 3
220 Armenia 12312 C 3 3
221 Armenia 12313 T 3 3
222 Armenia 12314 A 3 3
223 Armenia 12315 G 3 3
224 Armenia 12316 A 3 3
225 Armenia 12317 T 3 3
226 Armenia 12318 C 3 3
227 Armenia 12319 T 3 3
228 Armenia 12320 G 3 3
229 Armenia 12321 A 3 3
230 Armenia 12322 G 3 3
231 Armenia 12323 G 3 3
232 Armenia 12324 A 3 3
233 Armenia 12325 C 3 3
234 Armenia 12326 A 3 3
235 Armenia 12327 A 3 3
236 Armenia 12328 G 3 3
237 Armenia 12329 A 3 3
238 Armenia 12330 G 3 3
239 Armenia 12331 G 3 3
240 Armenia 12332 G 3 3
241 Armenia 12333 C 3 3
242 Armenia 12334 A 3 3
243 Armenia 12335 A 3 3
244 Armenia 12336 A 3 3
245 Armenia 12337 A 3 3
246 Armenia 12338 G 3 3
247 Armenia 12339 T 3 3
248 Armenia 12340 T 3 3
249 Armenia 12341 A 3 3
250 Armenia 12342 C 3 3
251 Armenia 12343 T 3 3
252 Armenia 12344 A 3 3
253 Armenia 12345 G 3 3
254 Armenia 12346 T 3 3
255 Armenia 12347 G 3 3
256 Armenia 12348 C 3 3
257 Armenia 12349 T 3 3
258 Armenia 12350 A 3 3
259 Armenia 12351 T 3 3
260 Armenia 12352 G 3 3
261 Armenia 12353 C 3 3
262 Armenia 12354 A 3 3
263 Armenia 12355 G 3 3
264 Armenia 12356 A 3 3
265 Armenia 12357 C 3 3
266 Armenia 12358 A 3 3
267 Armenia 12359 A 3 3
268 Armenia 12360 T 3 3
269 Armenia 12361 G 3 3
270 Armenia 12362 C 3 3
271 Armenia 12363 T 3 3
272 Armenia 12364 T 3 3
273 Armenia 12365 T 3 3
274 Armenia 12366 T 3 3
275 Armenia 12367 C 3 3
276 Armenia 12368 A 3 3
277 Armenia 12369 C 3 3
278 Armenia 12370 T 3 3
279 Armenia 12371 A 3 3
280 Armenia 12372 T 3 3
281 Armenia 12373 G 3 3
282 Armenia 12374 C 3 3
283 Armenia 12375 T 3 3
284 Armenia 12376 T 3 3
285 Armenia 12377 A 3 3
286 Armenia 12378 G 3 3
287 Armenia 12379 A 3 3
288 Armenia 12380 A 3 3
289 Armenia 12381 A 3 3
290 Armenia 12382 G 3 3
291 Armenia 12383 T 3 3
292 Armenia 12384 T 3 3
293 Armenia 12385 G 3 3
294 Armenia 12386 G 3 3
295 Armenia 12387 A 3 3
296 Armenia 12388 T 3 3
297 Armenia 12389 A 3 3
298 Armenia 12390 A 3 3
299 Armenia 12391 T 3 3
300 Armenia 12392 G 3 3
301 Armenia 12393 A 3 3
302 Armenia 12394 T 3 3
303 Armenia 12395 G 3 3
304 Armenia 12396 C 3 3
305 Armenia 12397 A 3 3
306 Armenia 12398 C 3 3
307 Armenia 12399 T 3 3
308 Armenia 12400 C 3 3
309 Armenia 12401 A 3 3
310 Armenia 12402 A 3 3
311 Armenia 12403 C 3 3
312 Armenia 12404 A 3 3
313 Armenia 12405 A 3 3
314 Armenia 12406 C 3 3
315 Armenia 12407 A 3 3
316 Armenia 12408 T 3 3
317 Armenia 12409 T 3 3
318 Armenia 12410 A 3 3
319 Armenia 12411 T 3 3
320 Armenia 12412 C 3 3
321 Armenia 12413 A 3 3
322 Armenia 12414 A 3 3
323 Armenia 12415 C 3 3
324 Armenia 12416 A 3 3
325 Armenia 12417 A 3 3
326 Armenia 12418 T 3 3
327 Armenia 12419 G 3 3
328 Armenia 12420 C 3 3
329 Armenia 12421 A 3 3
330 Armenia 12422 A 3 3
331 Armenia 12423 G 3 3
332 Armenia 12424 A 3 3
333 Armenia 12425 G 3 3
334 Armenia 12426 A 3 3
335 Armenia 12427 T 3 3
336 Armenia 12428 G 3 3
337 Armenia 12429 G 3 3
338 Armenia 12430 T 3 3
339 Armenia 12431 T 3 3
340 Armenia 12432 G 3 3
341 Armenia 12433 T 3 3
342 Armenia 12434 G 3 3
343 Armenia 12435 T 3 3
344 Armenia 12436 T 3 3
345 Armenia 12437 C 3 3
346 Armenia 12438 C 3 3
347 Armenia 12439 C 3 3
348 Armenia 12440 T 3 3
349 Armenia 12441 T 3 3
350 Armenia 12442 G 3 3
351 Armenia 12443 A 3 3
352 Armenia 12444 A 3 3
353 Armenia 12445 C 3 3
354 Armenia 12446 A 3 3
355 Armenia 12447 T 3 3
356 Armenia 12448 A 3 3
357 Armenia 12449 A 3 3
358 Armenia 12450 T 3 3
359 Armenia 12451 A 3 3
360 Armenia 12452 C 3 3
361 Armenia 12453 C 3 3
362 Armenia 12454 T 3 3
363 Armenia 12455 C 3 3
364 Armenia 12456 T 3 3
365 Armenia 12457 T 3 3
366 Armenia 12458 A 3 3
367 Armenia 12459 C 3 3
368 Armenia 12460 A 3 3
369 Armenia 12461 A 3 3
370 Armenia 12462 C 3 3
371 Armenia 12463 A 3 3
372 Armenia 12464 G 3 3
373 Armenia 12465 C 3 3
374 Armenia 12466 A 3 3
375 Armenia 12467 G 3 3
376 Armenia 12468 C 3 3
377 Armenia 12469 C 3 3
378 Armenia 12470 A 3 3
379 Armenia 12471 A 3 3
380 Armenia 12472 A 3 3
381 Armenia 12473 C 3 3
382 Armenia 12474 T 3 3
383 Armenia 12475 A 3 3
384 Armenia 12476 A 3 3
385 Armenia 12477 T 3 3
386 Armenia 12478 G 3 3
387 Armenia 12479 G 3 3
388 Armenia 12480 T 3 3
389 Armenia 12481 T 3 3
390 Armenia 12482 G 3 3
391 Armenia 12483 T 3 3
392 Armenia 12484 C 3 3
393 Armenia 12485 A 3 3
394 Armenia 12486 T 3 3
395 Armenia 12487 A 3 3
396 Armenia 12488 C 3 3
397 Armenia 12489 C 3 3
398 Armenia 12490 A 3 3
399 Armenia 12491 G 3 3
400 Armenia 12492 A 3 3
401 Armenia 12493 C 3 3
402 Armenia 12494 T 3 3
403 Armenia 12495 A 3 3
404 Armenia 12496 T 3 3
405 Armenia 12497 A 3 3
406 Armenia 12498 A 3 3
407 Armenia 12499 C 3 3
408 Armenia 12500 A 3 3
409 Armenia 12501 C 3 3
410 Armenia 12502 A 3 3
411 Armenia 12503 T 3 3
412 Armenia 12504 A 3 3
413 Armenia 12505 T 3 3
414 Armenia 12506 A 3 3
415 Armenia 12507 A 3 3
416 Armenia 12508 A 3 3
417 Armenia 12509 A 3 3
418 Armenia 12510 A 3 3
419 Armenia 12511 T 3 3
420 Armenia 12512 A 3 3
421 Armenia 12513 C 3 3
422 Armenia 12514 G 3 3
423 Armenia 12515 T 3 3
424 Armenia 12516 G 3 3
425 Armenia 12517 T 3 3
426 Armenia 12518 G 3 3
427 Armenia 12519 A 3 3
428 Armenia 12520 T 3 3
429 Armenia 12521 G 3 3
430 Armenia 12522 G 3 3
431 Armenia 12523 T 3 3
432 Armenia 12524 A 3 3
433 Armenia 12525 C 3 3
434 Armenia 12526 A 3 3
435 Armenia 12527 A 3 3
436 Armenia 12528 C 3 3
437 Armenia 12529 A 3 3
438 Armenia 12530 T 3 3
439 Armenia 12531 T 3 3
440 Armenia 12532 T 3 3
441 Armenia 12533 A 3 3
442 Armenia 12534 C 3 3
443 Armenia 12535 T 3 3
444 Armenia 12536 T 3 3
445 Armenia 12537 A 3 3
446 Armenia 12538 T 3 3
447 Armenia 12539 G 3 3
448 Armenia 12540 C 3 3
449 Armenia 12541 A 3 3
450 Armenia 12542 T 3 3
451 Armenia 12543 C 3 3
452 Armenia 12544 A 3 3
453 Armenia 12545 G 3 3
454 Armenia 12546 C 3 3
455 Armenia 12547 A 3 3
456 Armenia 12548 T 3 3
457 Armenia 12549 T 3 3
458 Armenia 12550 G 3 3
459 Armenia 12551 T 3 3
460 Armenia 12552 G 3 3
461 Armenia 12553 G 3 3
462 Armenia 12554 G 3 3
463 Armenia 12555 A 3 3
464 Armenia 12556 A 3 3
465 Armenia 12557 A 3 3
466 Armenia 12558 T 3 3
467 Armenia 12559 C 3 3
468 Armenia 12560 C 3 3
469 Armenia 12561 A 3 3
470 Armenia 12562 A 3 3
471 Armenia 12563 C 3 3
472 Armenia 12564 A 3 3
473 Armenia 12565 G 3 3
474 Armenia 12566 G 3 3
475 Armenia 12567 T 3 3
476 Armenia 12568 T 3 3
477 Armenia 12569 G 3 3
478 Armenia 12570 T 3 3
479 Armenia 12571 A 3 3
480 Armenia 12572 G 3 3
481 Armenia 12573 A 3 3
482 Armenia 12574 T 3 3
483 Armenia 12575 G 3 3
484 Armenia 12576 C 3 3
485 Armenia 12577 A 3 3
486 Armenia 12578 G 3 3
487 Armenia 12579 A 3 3
488 Armenia 12580 T 3 3
489 Armenia 12581 A 3 3
490 Armenia 12582 G 3 3
491 Armenia 12583 T 3 3
492 Armenia 12584 A 3 3
493 Armenia 12585 A 3 3
494 Armenia 12586 A 3 3
495 Armenia 12587 A 3 3
496 Armenia 12588 T 3 3
497 Armenia 12589 T 3 3
498 Armenia 12590 G 3 3
499 Armenia 12591 T 3 3
500 Armenia 12592 T 3 3
501 Armenia 12593 C 3 3
502 Armenia 12594 A 3 3
503 Armenia 12595 A 3 3
504 Armenia 12596 C 3 3
505 Armenia 12597 T 3 3
506 Armenia 12598 T 3 3
507 Armenia 12599 A 3 3
508 Armenia 12600 G 3 3
509 Armenia 12601 T 3 3
510 Armenia 12602 G 3 3
511 Armenia 12603 A 3 3
512 Armenia 12604 A 3 3
513 Armenia 12605 A 3 3
514 Armenia 12606 T 3 3
515 Armenia 12607 T 3 3
516 Armenia 12608 A 3 3
517 Armenia 12609 G 3 3
518 Armenia 12610 T 3 3
519 Armenia 12611 A 3 3
520 Armenia 12612 T 3 3
521 Armenia 12613 G 3 3
522 Armenia 12614 G 3 3
523 Armenia 12615 A 3 3
524 Armenia 12616 C 3 3
525 Armenia 12617 A 3 3
526 Armenia 12618 A 3 3
527 Armenia 12619 T 3 3
528 Armenia 12620 T 3 3
529 Armenia 12621 C 3 3
530 Armenia 12622 A 3 3
531 Armenia 12623 C 3 3
532 Armenia 12624 C 3 3
533 Armenia 12625 T 3 3
534 Armenia 12626 A 3 3
535 Armenia 12627 A 3 3
536 Armenia 12628 T 3 3
537 Armenia 12629 T 3 3
538 Armenia 12630 T 3 3
539 Armenia 12631 A 3 3
540 Armenia 12632 G 3 3
541 Armenia 12633 C 3 3
542 Armenia 12634 A 3 3
543 Armenia 12635 T 3 3
544 Armenia 12636 G 3 3
545 Armenia 12637 G 3 3
546 Armenia 12638 C 3 3
547 Armenia 12639 C 3 3
548 Armenia 12640 T 3 3
549 Armenia 12641 C 3 3
550 Armenia 12642 T 3 3
551 Armenia 12643 T 3 3
552 Armenia 12644 A 3 3
553 Armenia 12645 T 3 3
554 Armenia 12646 T 3 3
555 Armenia 12647 G 3 3
556 Armenia 12648 T 3 3
557 Armenia 12649 A 3 3
558 Armenia 12650 A 3 3
559 Armenia 12651 C 3 3
560 Armenia 12652 A 3 3
561 Armenia 12653 G 3 3
562 Armenia 12654 C 3 3
563 Armenia 12655 T 3 3
564 Armenia 12656 T 3 3
565 Armenia 12657 T 3 3
566 Armenia 12658 A 3 3
567 Armenia 12659 A 3 3
568 Armenia 12660 G 3 3
569 Armenia 12661 G 3 3
570 Armenia 12662 G 3 3
571 Armenia 12663 C 3 3
572 Armenia 12664 C 3 3
573 Armenia 12665 A 3 3
574 Armenia 12666 A 3 3
575 Armenia 12667 T 3 3
576 Armenia 12668 T 3 3
577 Armenia 12669 C 3 3
578 Armenia 12670 T 3 3
579 Armenia 12671 G 3 3
580 Armenia 12672 C 3 3
581 Armenia 12673 T 3 3
582 Armenia 12674 G 3 3
583 Armenia 12675 T 3 3
584 Armenia 12676 C 3 3
585 Armenia 12677 A 3 3
586 Armenia 12678 A 3 3
587 Armenia 12679 A 3 3
588 Armenia 12680 T 3 3
589 Armenia 12681 T 3 3
590 Armenia 12682 A 3 3
591 Armenia 12683 C 3 3
592 Armenia 12684 A 3 3
593 Armenia 12685 G 3 3