National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Zambia 11843 T 2 2
1 Zambia 11844 C 2 2
2 Zambia 11845 T 2 2
3 Zambia 11846 A 2 2
4 Zambia 11847 A 2 2
5 Zambia 11848 A 2 2
6 Zambia 11849 A 2 2
7 Zambia 11850 T 2 2
8 Zambia 11851 G 2 2
9 Zambia 11852 T 2 2
10 Zambia 11853 C 2 2
11 Zambia 11854 A 2 2
12 Zambia 11855 G 2 2
13 Zambia 11856 A 2 2
14 Zambia 11857 T 2 2
15 Zambia 11858 G 2 2
16 Zambia 11859 T 2 2
17 Zambia 11860 A 2 2
18 Zambia 11861 A 2 2
19 Zambia 11862 A 2 2
20 Zambia 11863 G 2 2
21 Zambia 11864 T 2 2
22 Zambia 11865 G 2 2
23 Zambia 11866 C 2 2
24 Zambia 11867 A 2 2
25 Zambia 11868 C 2 2
26 Zambia 11869 A 2 2
27 Zambia 11870 T 2 2
28 Zambia 11871 C 2 2
29 Zambia 11872 A 2 2
30 Zambia 11873 G 2 2
31 Zambia 11874 T 2 2
32 Zambia 11875 A 2 2
33 Zambia 11876 G 2 2
34 Zambia 11877 T 2 2
35 Zambia 11878 C 2 2
36 Zambia 11879 T 2 2
37 Zambia 11880 T 2 2
38 Zambia 11881 A 2 2
39 Zambia 11882 C 2 2
40 Zambia 11883 T 2 2
41 Zambia 11884 C 2 2
42 Zambia 11885 T 2 2
43 Zambia 11886 C 2 2
44 Zambia 11887 A 2 2
45 Zambia 11888 G 2 2
46 Zambia 11889 T 2 2
47 Zambia 11890 T 2 2
48 Zambia 11891 T 2 2
49 Zambia 11892 T 2 2
50 Zambia 11893 G 2 2
51 Zambia 11894 C 2 2
52 Zambia 11895 A 2 2
53 Zambia 11896 A 2 2
54 Zambia 11897 C 2 2
55 Zambia 11898 A 2 2
56 Zambia 11899 A 2 2
57 Zambia 11900 C 2 2
58 Zambia 11901 T 2 2
59 Zambia 11902 C 2 2
60 Zambia 11903 A 2 2
61 Zambia 11904 G 2 2
62 Zambia 11905 A 2 2
63 Zambia 11906 G 2 2
64 Zambia 11907 T 2 2
65 Zambia 11908 A 2 2
66 Zambia 11909 G 2 2
67 Zambia 11910 A 2 2
68 Zambia 11911 A 2 2
69 Zambia 11912 T 2 2
70 Zambia 11913 C 2 2
71 Zambia 11914 A 2 2
72 Zambia 11915 T 2 2
73 Zambia 11916 C 2 2
74 Zambia 11917 A 2 2
75 Zambia 11918 T 2 2
76 Zambia 11919 C 2 2
77 Zambia 11920 T 2 2
78 Zambia 11921 A 2 2
79 Zambia 11922 A 2 2
80 Zambia 11923 A 2 2
81 Zambia 11924 T 2 2
82 Zambia 11925 T 2 2
83 Zambia 11926 G 2 2
84 Zambia 11927 T 2 2
85 Zambia 11928 G 2 2
86 Zambia 11929 G 2 2
87 Zambia 11930 G 2 2
88 Zambia 11931 C 2 2
89 Zambia 11932 T 2 2
90 Zambia 11933 C 2 2
91 Zambia 11934 A 2 2
92 Zambia 11935 A 2 2
93 Zambia 11936 T 2 2
94 Zambia 11937 G 2 2
95 Zambia 11938 T 2 2
96 Zambia 11939 G 2 2
97 Zambia 11940 T 2 2
98 Zambia 11941 C 2 2
99 Zambia 11942 C 2 2
100 Zambia 11943 A 2 2
101 Zambia 11944 G 2 2
102 Zambia 11945 T 2 2
103 Zambia 11946 T 2 2
104 Zambia 11947 A 2 2
105 Zambia 11948 C 2 2
106 Zambia 11949 A 2 2
107 Zambia 11950 C 2 2
108 Zambia 11951 A 2 2
109 Zambia 11952 A 2 2
110 Zambia 11953 T 2 2
111 Zambia 11954 G 2 2
112 Zambia 11955 A 2 2
113 Zambia 11956 C 2 2
114 Zambia 11957 A 2 2
115 Zambia 11958 T 2 2
116 Zambia 11959 T 2 2
117 Zambia 11960 C 2 2
118 Zambia 11961 T 2 2
119 Zambia 11962 C 2 2
120 Zambia 11963 T 2 2
121 Zambia 11964 T 2 2
122 Zambia 11965 A 2 2
123 Zambia 11966 G 2 2
124 Zambia 11967 C 2 2
125 Zambia 11968 T 2 2
126 Zambia 11969 A 2 2
127 Zambia 11970 A 2 2
128 Zambia 11971 A 2 2
129 Zambia 11972 G 2 2
130 Zambia 11973 A 2 2
131 Zambia 11974 T 2 2
132 Zambia 11975 A 2 2
133 Zambia 11976 C 2 2
134 Zambia 11977 T 2 2
135 Zambia 11978 A 2 2
136 Zambia 11979 C 2 2
137 Zambia 11980 T 2 2
138 Zambia 11981 G 2 2
139 Zambia 11982 A 2 2
140 Zambia 11983 A 2 2
141 Zambia 11984 G 2 2
142 Zambia 11985 C 2 2
143 Zambia 11986 C 2 2
144 Zambia 11987 T 2 2
145 Zambia 11988 T 2 2
146 Zambia 11989 T 2 2
147 Zambia 11990 G 2 2
148 Zambia 11991 A 2 2
149 Zambia 11992 A 2 2
150 Zambia 11993 A 2 2
151 Zambia 11994 A 2 2
152 Zambia 11995 A 2 2
153 Zambia 11996 A 2 2
154 Zambia 11997 T 2 2
155 Zambia 11998 G 2 2
156 Zambia 11999 G 2 2
157 Zambia 12000 T 2 2
158 Zambia 12001 T 2 2
159 Zambia 12002 T 2 2
160 Zambia 12003 C 2 2
161 Zambia 12004 A 2 2
162 Zambia 12005 C 2 2
163 Zambia 12006 T 2 2
164 Zambia 12007 A 2 2
165 Zambia 12008 C 2 2
166 Zambia 12009 T 2 2
167 Zambia 12010 T 2 2
168 Zambia 12011 T 2 2
169 Zambia 12012 C 2 2
170 Zambia 12013 T 2 2
171 Zambia 12014 G 2 2
172 Zambia 12015 T 2 2
173 Zambia 12016 T 2 2
174 Zambia 12017 T 2 2
175 Zambia 12018 T 2 2
176 Zambia 12019 G 2 2
177 Zambia 12020 C 2 2
178 Zambia 12021 T 2 2
179 Zambia 12022 T 2 2
180 Zambia 12023 T 2 2
181 Zambia 12024 C 2 2
182 Zambia 12025 C 2 2
183 Zambia 12026 A 2 2
184 Zambia 12027 T 2 2
185 Zambia 12028 G 2 2
186 Zambia 12029 C 2 2
187 Zambia 12030 A 2 2
188 Zambia 12031 G 2 2
189 Zambia 12032 G 2 2
190 Zambia 12033 G 2 2
191 Zambia 12034 T 2 2
192 Zambia 12035 G 2 2
193 Zambia 12036 C 2 2
194 Zambia 12037 T 2 2
195 Zambia 12038 G 2 2
196 Zambia 12039 T 2 2
197 Zambia 12040 A 2 2
198 Zambia 12041 G 2 2
199 Zambia 12042 A 2 2
200 Zambia 12043 C 2 2
201 Zambia 12044 A 2 2
202 Zambia 12045 T 2 2
203 Zambia 12046 A 2 2
204 Zambia 12047 A 2 2
205 Zambia 12048 A 2 2
206 Zambia 12049 C 2 2
207 Zambia 12050 A 2 2
208 Zambia 12051 A 2 2
209 Zambia 12052 G 2 2
210 Zambia 12053 C 2 2
211 Zambia 12054 T 2 2
212 Zambia 12055 T 2 2
213 Zambia 12056 T 2 2
214 Zambia 12057 G 2 2
215 Zambia 12058 T 2 2
216 Zambia 12059 G 2 2
217 Zambia 12060 A 2 2
218 Zambia 12061 A 2 2
219 Zambia 12062 G 2 2
220 Zambia 12063 A 2 2
221 Zambia 12064 A 2 2
222 Zambia 12065 A 2 2
223 Zambia 12066 T 2 2
224 Zambia 12067 G 2 2
225 Zambia 12068 C 2 2
226 Zambia 12069 T 2 2
227 Zambia 12070 G 2 2
228 Zambia 12071 G 2 2
229 Zambia 12072 A 2 2
230 Zambia 12073 C 2 2
231 Zambia 12074 A 2 2
232 Zambia 12075 A 2 2
233 Zambia 12076 C 2 2
234 Zambia 12077 A 2 2
235 Zambia 12078 G 2 2
236 Zambia 12079 G 2 2
237 Zambia 12080 G 2 2
238 Zambia 12081 C 2 2
239 Zambia 12082 A 2 2
240 Zambia 12083 A 2 2
241 Zambia 12084 C 2 2
242 Zambia 12085 C 2 2
243 Zambia 12086 T 2 2
244 Zambia 12087 T 2 2
245 Zambia 12088 A 2 2
246 Zambia 12089 C 2 2
247 Zambia 12090 A 2 2
248 Zambia 12091 A 2 2