National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Vietnam 11843 T 116 116
1 Vietnam 11844 C 116 116
2 Vietnam 11845 T 116 116
3 Vietnam 11846 A 116 116
4 Vietnam 11847 A 116 116
5 Vietnam 11848 A 116 116
6 Vietnam 11849 A 116 116
7 Vietnam 11850 T 116 116
8 Vietnam 11851 G 116 116
9 Vietnam 11852 T 116 116
10 Vietnam 11853 C 116 116
11 Vietnam 11854 A 116 116
12 Vietnam 11855 G 116 116
13 Vietnam 11856 A 116 116
14 Vietnam 11857 T 116 116
15 Vietnam 11858 G 116 116
16 Vietnam 11859 T 116 116
17 Vietnam 11860 A 116 116
18 Vietnam 11861 A 116 116
19 Vietnam 11862 A 116 116
20 Vietnam 11863 G 116 116
21 Vietnam 11864 T 116 116
22 Vietnam 11865 G 116 116
23 Vietnam 11866 C 116 116
24 Vietnam 11867 A 116 116
25 Vietnam 11868 C 116 116
26 Vietnam 11869 A 116 116
27 Vietnam 11870 T 116 116
28 Vietnam 11871 C 116 116
29 Vietnam 11872 A 116 116
30 Vietnam 11873 G 116 116
31 Vietnam 11874 T 116 116
32 Vietnam 11875 A 116 116
33 Vietnam 11876 G 116 116
34 Vietnam 11877 T 116 116
35 Vietnam 11878 C 116 116
36 Vietnam 11879 T 116 116
37 Vietnam 11880 T 116 116
38 Vietnam 11881 A 116 116
39 Vietnam 11882 C 116 116
40 Vietnam 11883 T 116 116
41 Vietnam 11884 C 116 116
42 Vietnam 11885 T 116 116
43 Vietnam 11886 C 116 116
44 Vietnam 11887 A 116 116
45 Vietnam 11888 G 116 116
46 Vietnam 11889 T 116 116
47 Vietnam 11890 T 116 116
48 Vietnam 11891 T 116 116
49 Vietnam 11892 T 116 116
50 Vietnam 11893 G 116 116
51 Vietnam 11894 C 116 116
52 Vietnam 11895 A 116 116
53 Vietnam 11896 A 116 116
54 Vietnam 11897 C 116 116
55 Vietnam 11898 A 116 116
56 Vietnam 11899 A 116 116
57 Vietnam 11900 C 116 116
58 Vietnam 11901 T 116 116
59 Vietnam 11902 C 116 116
60 Vietnam 11903 A 116 116
61 Vietnam 11904 G 116 116
62 Vietnam 11905 A 116 116
63 Vietnam 11906 G 116 116
64 Vietnam 11907 T 116 116
65 Vietnam 11908 A 116 116
66 Vietnam 11909 G 116 116
67 Vietnam 11910 A 116 116
68 Vietnam 11911 A 116 116
69 Vietnam 11912 T 116 116
70 Vietnam 11913 C 116 116
71 Vietnam 11914 A 116 116
72 Vietnam 11915 T 116 116
73 Vietnam 11916 C 116 116
74 Vietnam 11917 A 116 116
75 Vietnam 11918 T 116 116
76 Vietnam 11919 C 116 116
77 Vietnam 11920 T 116 116
78 Vietnam 11921 A 116 116
79 Vietnam 11922 A 116 116
80 Vietnam 11923 A 116 116
81 Vietnam 11924 T 116 116
82 Vietnam 11925 T 116 116
83 Vietnam 11926 G 116 116
84 Vietnam 11927 T 116 116
85 Vietnam 11928 G 116 116
86 Vietnam 11929 G 116 116
87 Vietnam 11930 G 116 116
88 Vietnam 11931 C 116 116
89 Vietnam 11932 T 116 116
90 Vietnam 11933 C 116 116
91 Vietnam 11934 A 116 116
92 Vietnam 11935 A 116 116
93 Vietnam 11936 T 116 116
94 Vietnam 11937 G 116 116
95 Vietnam 11938 T 116 116
96 Vietnam 11939 G 116 116
97 Vietnam 11940 T 116 116
98 Vietnam 11941 C 116 116
99 Vietnam 11942 C 116 116
100 Vietnam 11943 A 116 116
101 Vietnam 11944 G 116 116
102 Vietnam 11945 T 116 116
103 Vietnam 11946 T 116 116
104 Vietnam 11947 A 116 116
105 Vietnam 11948 C 116 116
106 Vietnam 11949 A 116 116
107 Vietnam 11950 C 116 116
108 Vietnam 11951 A 116 116
109 Vietnam 11952 A 116 116
110 Vietnam 11953 T 116 116
111 Vietnam 11954 G 116 116
112 Vietnam 11955 A 116 116
113 Vietnam 11956 C 116 116
114 Vietnam 11957 A 116 116
115 Vietnam 11958 T 116 116
116 Vietnam 11959 T 116 116
117 Vietnam 11960 C 116 116
118 Vietnam 11961 T 116 116
119 Vietnam 11962 C 116 116
120 Vietnam 11963 T 116 116
121 Vietnam 11964 T 116 116
122 Vietnam 11965 A 116 116
123 Vietnam 11966 G 116 116
124 Vietnam 11967 C 116 116
125 Vietnam 11968 T 116 116
126 Vietnam 11969 A 116 116
127 Vietnam 11970 A 116 116
128 Vietnam 11971 A 116 116
129 Vietnam 11972 G 116 116
130 Vietnam 11973 A 116 116
131 Vietnam 11974 T 116 116
132 Vietnam 11975 A 116 116
133 Vietnam 11976 C 116 116
134 Vietnam 11977 T 116 116
135 Vietnam 11978 A 116 116
136 Vietnam 11979 C 116 116
137 Vietnam 11980 T 116 116
138 Vietnam 11981 G 116 116
139 Vietnam 11982 A 116 116
140 Vietnam 11983 A 116 116
141 Vietnam 11984 G 116 116
142 Vietnam 11985 C 116 116
143 Vietnam 11986 C 116 116
144 Vietnam 11987 T 116 116
145 Vietnam 11988 T 116 116
146 Vietnam 11989 T 116 116
147 Vietnam 11990 G 116 116
148 Vietnam 11991 A 116 116
149 Vietnam 11992 A 116 116
150 Vietnam 11993 A 116 116
151 Vietnam 11994 A 116 116
152 Vietnam 11995 A 116 116
153 Vietnam 11996 A 116 116
154 Vietnam 11997 T 116 116
155 Vietnam 11998 G 116 116
156 Vietnam 11999 G 116 116
157 Vietnam 12000 T 116 116
158 Vietnam 12001 T 116 116
159 Vietnam 12002 T 116 116
160 Vietnam 12003 C 116 116
161 Vietnam 12004 A 116 116
162 Vietnam 12005 C 116 116
163 Vietnam 12006 T 116 116
164 Vietnam 12007 A 116 116
165 Vietnam 12008 C 116 116
166 Vietnam 12009 T 116 116
167 Vietnam 12010 T 116 116
168 Vietnam 12011 T 116 116
169 Vietnam 12012 C 116 116
170 Vietnam 12013 T 116 116
171 Vietnam 12014 G 116 116
172 Vietnam 12015 T 116 116
173 Vietnam 12016 T 116 116
174 Vietnam 12017 T 116 116
175 Vietnam 12018 T 116 116
176 Vietnam 12019 G 116 116
177 Vietnam 12020 C 116 116
178 Vietnam 12021 T 116 116
179 Vietnam 12022 T 116 116
180 Vietnam 12023 T 116 116
181 Vietnam 12024 C 116 116
182 Vietnam 12025 C 116 116
183 Vietnam 12026 A 116 116
184 Vietnam 12027 T 116 116
185 Vietnam 12028 G 116 116
186 Vietnam 12029 C 116 116
187 Vietnam 12030 A 116 116
188 Vietnam 12031 G 116 116
189 Vietnam 12032 G 116 116
190 Vietnam 12033 G 116 116
191 Vietnam 12034 T 116 116
192 Vietnam 12035 G 116 116
193 Vietnam 12036 C 116 116
194 Vietnam 12037 T 116 116
195 Vietnam 12038 G 116 116
196 Vietnam 12039 T 116 116
197 Vietnam 12040 A 116 116
198 Vietnam 12041 G 116 116
199 Vietnam 12042 A 116 116
200 Vietnam 12043 C 116 116
201 Vietnam 12044 A 116 116
202 Vietnam 12045 T 116 116
203 Vietnam 12046 A 116 116
204 Vietnam 12047 A 116 116
205 Vietnam 12048 A 116 116
206 Vietnam 12049 C 116 116
207 Vietnam 12050 A 116 116
208 Vietnam 12051 A 116 116
209 Vietnam 12052 G 116 116
210 Vietnam 12053 C 116 116
211 Vietnam 12054 T 116 116
212 Vietnam 12055 T 116 116
213 Vietnam 12056 T 116 116
214 Vietnam 12057 G 116 116
215 Vietnam 12058 T 116 116
216 Vietnam 12059 G 116 116
217 Vietnam 12060 A 116 116
218 Vietnam 12061 A 116 116
219 Vietnam 12062 G 116 116
220 Vietnam 12063 A 116 116
221 Vietnam 12064 A 116 116
222 Vietnam 12065 A 116 116
223 Vietnam 12066 T 116 116
224 Vietnam 12067 G 116 116
225 Vietnam 12068 C 116 116
226 Vietnam 12069 T 116 116
227 Vietnam 12070 G 116 116
228 Vietnam 12071 G 116 116
229 Vietnam 12072 A 116 116
230 Vietnam 12073 C 116 116
231 Vietnam 12074 A 116 116
232 Vietnam 12075 A 116 116
233 Vietnam 12076 C 116 116
234 Vietnam 12077 A 116 116
235 Vietnam 12078 G 116 116
236 Vietnam 12079 G 116 116
237 Vietnam 12080 G 116 116
238 Vietnam 12081 C 116 116
239 Vietnam 12082 A 116 116
240 Vietnam 12083 A 116 116
241 Vietnam 12084 C 116 116
242 Vietnam 12085 C 116 116
243 Vietnam 12086 T 116 116
244 Vietnam 12087 T 116 116
245 Vietnam 12088 A 116 116
246 Vietnam 12089 C 116 116
247 Vietnam 12090 A 116 116
248 Vietnam 12091 A 116 116