National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Uzbekistan 11843 T <*> 2 2
1 Uzbekistan 11844 C <*> 2 2
2 Uzbekistan 11845 T <*> 2 2
3 Uzbekistan 11846 A <*> 2 2
4 Uzbekistan 11847 A <*> 2 2
5 Uzbekistan 11848 A <*> 2 2
6 Uzbekistan 11849 A <*> 2 2
7 Uzbekistan 11850 T <*> 2 2
8 Uzbekistan 11851 G <*> 2 2
9 Uzbekistan 11852 T <*> 2 2
10 Uzbekistan 11853 C <*> 2 2
11 Uzbekistan 11854 A <*> 2 2
12 Uzbekistan 11855 G <*> 2 2
13 Uzbekistan 11856 A <*> 2 2
14 Uzbekistan 11857 T <*> 2 2
15 Uzbekistan 11858 G <*> 2 2
16 Uzbekistan 11859 T <*> 2 2
17 Uzbekistan 11860 A <*> 2 2
18 Uzbekistan 11861 A <*> 2 2
19 Uzbekistan 11862 A <*> 2 2
20 Uzbekistan 11863 G <*> 2 2
21 Uzbekistan 11864 T <*> 2 2
22 Uzbekistan 11865 G <*> 2 2
23 Uzbekistan 11866 C <*> 2 2
24 Uzbekistan 11867 A <*> 2 2
25 Uzbekistan 11868 C <*> 2 2
26 Uzbekistan 11869 A <*> 2 2
27 Uzbekistan 11870 T <*> 2 2
28 Uzbekistan 11871 C <*> 2 2
29 Uzbekistan 11872 A <*> 2 2
30 Uzbekistan 11873 G <*> 2 2
31 Uzbekistan 11874 T <*> 2 2
32 Uzbekistan 11875 A <*> 2 2
33 Uzbekistan 11876 G <*> 2 2
34 Uzbekistan 11877 T <*> 2 2
35 Uzbekistan 11878 C <*> 2 2
36 Uzbekistan 11879 T <*> 2 2
37 Uzbekistan 11880 T <*> 2 2
38 Uzbekistan 11881 A <*> 2 2
39 Uzbekistan 11882 C <*> 2 2
40 Uzbekistan 11883 T <*> 2 2
41 Uzbekistan 11884 C <*> 2 2
42 Uzbekistan 11885 T <*> 2 2
43 Uzbekistan 11886 C <*> 2 2
44 Uzbekistan 11887 A <*> 2 2
45 Uzbekistan 11888 G <*> 2 2
46 Uzbekistan 11889 T <*> 2 2
47 Uzbekistan 11890 T <*> 2 2
48 Uzbekistan 11891 T <*> 2 2
49 Uzbekistan 11892 T <*> 2 2
50 Uzbekistan 11893 G <*> 2 2
51 Uzbekistan 11894 C <*> 2 2
52 Uzbekistan 11895 A <*> 2 2
53 Uzbekistan 11896 A <*> 2 2
54 Uzbekistan 11897 C <*> 2 2
55 Uzbekistan 11898 A <*> 2 2
56 Uzbekistan 11899 A <*> 2 2
57 Uzbekistan 11900 C <*> 2 2
58 Uzbekistan 11901 T <*> 2 2
59 Uzbekistan 11902 C <*> 2 2
60 Uzbekistan 11903 A <*> 2 2
61 Uzbekistan 11904 G <*> 2 2
62 Uzbekistan 11905 A <*> 2 2
63 Uzbekistan 11906 G <*> 2 2
64 Uzbekistan 11907 T <*> 2 2
65 Uzbekistan 11908 A <*> 2 2
66 Uzbekistan 11909 G <*> 2 2
67 Uzbekistan 11910 A <*> 2 2
68 Uzbekistan 11911 A <*> 2 2
69 Uzbekistan 11912 T <*> 2 2
70 Uzbekistan 11913 C <*> 2 2
71 Uzbekistan 11914 A <*> 2 2
72 Uzbekistan 11915 T <*> 2 2
73 Uzbekistan 11916 C <*> 2 2
74 Uzbekistan 11917 A <*> 2 2
75 Uzbekistan 11918 T <*> 2 2
76 Uzbekistan 11919 C <*> 2 2
77 Uzbekistan 11920 T <*> 2 2
78 Uzbekistan 11921 A <*> 2 2
79 Uzbekistan 11922 A <*> 2 2
80 Uzbekistan 11923 A <*> 2 2
81 Uzbekistan 11924 T <*> 2 2
82 Uzbekistan 11925 T <*> 2 2
83 Uzbekistan 11926 G <*> 2 2
84 Uzbekistan 11927 T <*> 2 2
85 Uzbekistan 11928 G <*> 2 2
86 Uzbekistan 11929 G <*> 2 2
87 Uzbekistan 11930 G <*> 2 2
88 Uzbekistan 11931 C <*> 2 2
89 Uzbekistan 11932 T <*> 2 2
90 Uzbekistan 11933 C <*> 2 2
91 Uzbekistan 11934 A <*> 2 2
92 Uzbekistan 11935 A <*> 2 2
93 Uzbekistan 11936 T <*> 2 2
94 Uzbekistan 11937 G <*> 2 2
95 Uzbekistan 11938 T <*> 2 2
96 Uzbekistan 11939 G <*> 2 2
97 Uzbekistan 11940 T <*> 2 2
98 Uzbekistan 11941 C <*> 2 2
99 Uzbekistan 11942 C <*> 2 2
100 Uzbekistan 11943 A <*> 2 2
101 Uzbekistan 11944 G <*> 2 2
102 Uzbekistan 11945 T <*> 2 2
103 Uzbekistan 11946 T <*> 2 2
104 Uzbekistan 11947 A <*> 2 2
105 Uzbekistan 11948 C <*> 2 2
106 Uzbekistan 11949 A <*> 2 2
107 Uzbekistan 11950 C <*> 2 2
108 Uzbekistan 11951 A <*> 2 2
109 Uzbekistan 11952 A <*> 2 2
110 Uzbekistan 11953 T <*> 2 2
111 Uzbekistan 11954 G <*> 2 2
112 Uzbekistan 11955 A <*> 2 2
113 Uzbekistan 11956 C <*> 2 2
114 Uzbekistan 11957 A <*> 2 2
115 Uzbekistan 11958 T <*> 2 2
116 Uzbekistan 11959 T <*> 2 2
117 Uzbekistan 11960 C <*> 2 2
118 Uzbekistan 11961 T <*> 2 2
119 Uzbekistan 11962 C <*> 2 2
120 Uzbekistan 11963 T <*> 2 2
121 Uzbekistan 11964 T <*> 2 2
122 Uzbekistan 11965 A <*> 2 2
123 Uzbekistan 11966 G <*> 2 2
124 Uzbekistan 11967 C <*> 2 2
125 Uzbekistan 11968 T <*> 2 2
126 Uzbekistan 11969 A <*> 2 2
127 Uzbekistan 11970 A <*> 2 2
128 Uzbekistan 11971 A <*> 2 2
129 Uzbekistan 11972 G <*> 2 2
130 Uzbekistan 11973 A <*> 2 2
131 Uzbekistan 11974 T <*> 2 2
132 Uzbekistan 11975 A <*> 2 2
133 Uzbekistan 11976 C <*> 2 2
134 Uzbekistan 11977 T <*> 2 2
135 Uzbekistan 11978 A <*> 2 2
136 Uzbekistan 11979 C <*> 2 2
137 Uzbekistan 11980 T <*> 2 2
138 Uzbekistan 11981 G <*> 2 2
139 Uzbekistan 11982 A <*> 2 2
140 Uzbekistan 11983 A <*> 2 2
141 Uzbekistan 11984 G <*> 2 2
142 Uzbekistan 11985 C <*> 2 2
143 Uzbekistan 11986 C <*> 2 2
144 Uzbekistan 11987 T <*> 2 2
145 Uzbekistan 11988 T <*> 2 2
146 Uzbekistan 11989 T <*> 2 2
147 Uzbekistan 11990 G <*> 2 2
148 Uzbekistan 11991 A <*> 2 2
149 Uzbekistan 11992 A <*> 2 2
150 Uzbekistan 11993 A <*> 2 2
151 Uzbekistan 11994 A <*> 2 2
152 Uzbekistan 11995 A <*> 2 2
153 Uzbekistan 11996 A <*> 2 2
154 Uzbekistan 11997 T <*> 2 2
155 Uzbekistan 11998 G <*> 2 2
156 Uzbekistan 11999 G <*> 2 2
157 Uzbekistan 12000 T <*> 2 2
158 Uzbekistan 12001 T <*> 2 2
159 Uzbekistan 12002 T <*> 2 2
160 Uzbekistan 12003 C <*> 2 2
161 Uzbekistan 12004 A <*> 2 2
162 Uzbekistan 12005 C <*> 2 2
163 Uzbekistan 12006 T <*> 2 2
164 Uzbekistan 12007 A <*> 2 2
165 Uzbekistan 12008 C <*> 2 2
166 Uzbekistan 12009 T <*> 2 2
167 Uzbekistan 12010 T <*> 2 2
168 Uzbekistan 12011 T <*> 2 2
169 Uzbekistan 12012 C <*> 2 2
170 Uzbekistan 12013 T <*> 2 2
171 Uzbekistan 12014 G <*> 2 2
172 Uzbekistan 12015 T <*> 2 2
173 Uzbekistan 12016 T <*> 2 2
174 Uzbekistan 12017 T <*> 2 2
175 Uzbekistan 12018 T <*> 2 2
176 Uzbekistan 12019 G <*> 2 2
177 Uzbekistan 12020 C <*> 2 2
178 Uzbekistan 12021 T <*> 2 2
179 Uzbekistan 12022 T <*> 2 2
180 Uzbekistan 12023 T <*> 2 2
181 Uzbekistan 12024 C <*> 2 2
182 Uzbekistan 12025 C <*> 2 2
183 Uzbekistan 12026 A <*> 2 2
184 Uzbekistan 12027 T <*> 2 2
185 Uzbekistan 12028 G <*> 2 2
186 Uzbekistan 12029 C <*> 2 2
187 Uzbekistan 12030 A <*> 2 2
188 Uzbekistan 12031 G <*> 2 2
189 Uzbekistan 12032 G <*> 2 2
190 Uzbekistan 12033 G <*> 2 2
191 Uzbekistan 12034 T <*> 2 2
192 Uzbekistan 12035 G <*> 2 2
193 Uzbekistan 12036 C <*> 2 2
194 Uzbekistan 12037 T <*> 2 2
195 Uzbekistan 12038 G <*> 2 2
196 Uzbekistan 12039 T <*> 2 2
197 Uzbekistan 12040 A <*> 2 2
198 Uzbekistan 12041 G <*> 2 2
199 Uzbekistan 12042 A <*> 2 2
200 Uzbekistan 12043 C <*> 2 2
201 Uzbekistan 12044 A <*> 2 2
202 Uzbekistan 12045 T <*> 2 2
203 Uzbekistan 12046 A <*> 2 2
204 Uzbekistan 12047 A <*> 2 2
205 Uzbekistan 12048 A <*> 2 2
206 Uzbekistan 12049 C <*> 2 2
207 Uzbekistan 12050 A <*> 2 2
208 Uzbekistan 12051 A <*> 2 2
209 Uzbekistan 12052 G <*> 2 2
210 Uzbekistan 12053 C <*> 2 2
211 Uzbekistan 12054 T <*> 2 2
212 Uzbekistan 12055 T <*> 2 2
213 Uzbekistan 12056 T <*> 2 2
214 Uzbekistan 12057 G <*> 2 2
215 Uzbekistan 12058 T <*> 2 2
216 Uzbekistan 12059 G <*> 2 2
217 Uzbekistan 12060 A <*> 2 2
218 Uzbekistan 12061 A <*> 2 2
219 Uzbekistan 12062 G <*> 2 2
220 Uzbekistan 12063 A <*> 2 2
221 Uzbekistan 12064 A <*> 2 2
222 Uzbekistan 12065 A <*> 2 2
223 Uzbekistan 12066 T <*> 2 2
224 Uzbekistan 12067 G <*> 2 2
225 Uzbekistan 12068 C <*> 2 2
226 Uzbekistan 12069 T <*> 2 2
227 Uzbekistan 12070 G <*> 2 2
228 Uzbekistan 12071 G <*> 2 2
229 Uzbekistan 12072 A <*> 2 2
230 Uzbekistan 12073 C <*> 2 2
231 Uzbekistan 12074 A <*> 2 2
232 Uzbekistan 12075 A <*> 2 2
233 Uzbekistan 12076 C <*> 2 2
234 Uzbekistan 12077 A <*> 2 2
235 Uzbekistan 12078 G <*> 2 2
236 Uzbekistan 12079 G <*> 2 2
237 Uzbekistan 12080 G <*> 2 2
238 Uzbekistan 12081 C <*> 2 2
239 Uzbekistan 12082 A <*> 2 2
240 Uzbekistan 12083 A <*> 2 2
241 Uzbekistan 12084 C <*> 2 2
242 Uzbekistan 12085 C <*> 2 2
243 Uzbekistan 12086 T <*> 2 2
244 Uzbekistan 12087 T <*> 2 2
245 Uzbekistan 12088 A <*> 2 2
246 Uzbekistan 12089 C <*> 2 2
247 Uzbekistan 12090 A <*> 2 2
248 Uzbekistan 12091 A <*> 2 2