National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45         1                          
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                 1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Uganda 11843 T 133 133
1 Uganda 11844 C 133 133
2 Uganda 11845 T 133 133
3 Uganda 11846 A 133 133
4 Uganda 11847 A 133 133
5 Uganda 11848 A 133 133
6 Uganda 11849 A 133 133
7 Uganda 11850 T 133 133
8 Uganda 11851 G 133 132
9 Uganda 11852 T 133 133
10 Uganda 11853 C 133 133
11 Uganda 11854 A 133 133
12 Uganda 11855 G 133 133
13 Uganda 11856 A 133 133
14 Uganda 11857 T 133 133
15 Uganda 11858 G 133 133
16 Uganda 11859 T 133 133
17 Uganda 11860 A 133 133
18 Uganda 11861 A 133 133
19 Uganda 11862 A 133 133
20 Uganda 11863 G 133 133
21 Uganda 11864 T 133 133
22 Uganda 11865 G 133 133
23 Uganda 11866 C 133 132
24 Uganda 11867 A 133 133
25 Uganda 11868 C 133 133
26 Uganda 11869 A 133 133
27 Uganda 11870 T 133 133
28 Uganda 11871 C 133 133
29 Uganda 11872 A 133 133
30 Uganda 11873 G 133 133
31 Uganda 11874 T 133 133
32 Uganda 11875 A 133 133
33 Uganda 11876 G 133 133
34 Uganda 11877 T 133 133
35 Uganda 11878 C 133 133
36 Uganda 11879 T 133 133
37 Uganda 11880 T 133 133
38 Uganda 11881 A 133 133
39 Uganda 11882 C 133 133
40 Uganda 11883 T 133 133
41 Uganda 11884 C 133 133
42 Uganda 11885 T 133 133
43 Uganda 11886 C 133 133
44 Uganda 11887 A 133 133
45 Uganda 11888 G 133 133
46 Uganda 11889 T 133 133
47 Uganda 11890 T 133 133
48 Uganda 11891 T 133 133
49 Uganda 11892 T 133 133
50 Uganda 11893 G C 133 132 Leu3876Phe
51 Uganda 11894 C 133 133
52 Uganda 11895 A 133 133
53 Uganda 11896 A 133 133
54 Uganda 11897 C 133 133
55 Uganda 11898 A 133 133
56 Uganda 11899 A 133 133
57 Uganda 11900 C 133 133
58 Uganda 11901 T 133 133
59 Uganda 11902 C 133 133
60 Uganda 11903 A 133 133
61 Uganda 11904 G 133 133
62 Uganda 11905 A 133 133
63 Uganda 11906 G 133 133
64 Uganda 11907 T 133 133
65 Uganda 11908 A G 133 126 Val3881Val
66 Uganda 11909 G 133 133
67 Uganda 11910 A 133 133
68 Uganda 11911 A 133 133
69 Uganda 11912 T 133 133
70 Uganda 11913 C 133 133
71 Uganda 11914 A 133 133
72 Uganda 11915 T 133 133
73 Uganda 11916 C 133 133
74 Uganda 11917 A 133 133
75 Uganda 11918 T 133 133
76 Uganda 11919 C 133 133
77 Uganda 11920 T 133 133
78 Uganda 11921 A 133 133
79 Uganda 11922 A 133 133
80 Uganda 11923 A 133 133
81 Uganda 11924 T 133 133
82 Uganda 11925 T 133 133
83 Uganda 11926 G 133 133
84 Uganda 11927 T 133 133
85 Uganda 11928 G 133 133
86 Uganda 11929 G 133 133
87 Uganda 11930 G 133 133
88 Uganda 11931 C 133 133
89 Uganda 11932 T 133 133
90 Uganda 11933 C 133 133
91 Uganda 11934 A 133 133
92 Uganda 11935 A 133 133
93 Uganda 11936 T 133 133
94 Uganda 11937 G 133 133
95 Uganda 11938 T 133 133
96 Uganda 11939 G 133 133
97 Uganda 11940 T 133 133
98 Uganda 11941 C 133 133
99 Uganda 11942 C 133 133
100 Uganda 11943 A 133 133
101 Uganda 11944 G 133 133
102 Uganda 11945 T 133 133
103 Uganda 11946 T 133 133
104 Uganda 11947 A 133 133
105 Uganda 11948 C 133 133
106 Uganda 11949 A 133 133
107 Uganda 11950 C 133 133
108 Uganda 11951 A 133 133
109 Uganda 11952 A 133 133
110 Uganda 11953 T 133 133
111 Uganda 11954 G 133 133
112 Uganda 11955 A 133 133
113 Uganda 11956 C 133 133
114 Uganda 11957 A 133 133
115 Uganda 11958 T 133 133
116 Uganda 11959 T 133 133
117 Uganda 11960 C 133 133
118 Uganda 11961 T 133 133
119 Uganda 11962 C 133 133
120 Uganda 11963 T 133 133
121 Uganda 11964 T 133 133
122 Uganda 11965 A 133 133
123 Uganda 11966 G 133 133
124 Uganda 11967 C 133 133
125 Uganda 11968 T 133 133
126 Uganda 11969 A 133 133
127 Uganda 11970 A 133 133
128 Uganda 11971 A 133 133
129 Uganda 11972 G 133 133
130 Uganda 11973 A 133 133
131 Uganda 11974 T 133 133
132 Uganda 11975 A 133 133
133 Uganda 11976 C 133 133
134 Uganda 11977 T 133 133
135 Uganda 11978 A 133 133
136 Uganda 11979 C 133 133
137 Uganda 11980 T 133 133
138 Uganda 11981 G 133 133
139 Uganda 11982 A 133 133
140 Uganda 11983 A 133 133
141 Uganda 11984 G 133 133
142 Uganda 11985 C 133 133
143 Uganda 11986 C 133 133
144 Uganda 11987 T 133 133
145 Uganda 11988 T 133 133
146 Uganda 11989 T 133 133
147 Uganda 11990 G 133 133
148 Uganda 11991 A 133 132
149 Uganda 11992 A 133 133
150 Uganda 11993 A 133 133
151 Uganda 11994 A 133 133
152 Uganda 11995 A 133 133
153 Uganda 11996 A 133 133
154 Uganda 11997 T 133 133
155 Uganda 11998 G 133 133
156 Uganda 11999 G 133 133
157 Uganda 12000 T 133 133
158 Uganda 12001 T 133 133
159 Uganda 12002 T 133 133
160 Uganda 12003 C 133 133
161 Uganda 12004 A 133 133
162 Uganda 12005 C 133 133
163 Uganda 12006 T 133 133
164 Uganda 12007 A 133 133
165 Uganda 12008 C 133 133
166 Uganda 12009 T 133 133
167 Uganda 12010 T 133 133
168 Uganda 12011 T 133 133
169 Uganda 12012 C 133 133
170 Uganda 12013 T 133 133
171 Uganda 12014 G 133 133
172 Uganda 12015 T 133 133
173 Uganda 12016 T 133 133
174 Uganda 12017 T 133 133
175 Uganda 12018 T 133 133
176 Uganda 12019 G 133 133
177 Uganda 12020 C 133 133
178 Uganda 12021 T 133 133
179 Uganda 12022 T 133 133
180 Uganda 12023 T 133 133
181 Uganda 12024 C 133 133
182 Uganda 12025 C 133 133
183 Uganda 12026 A 133 133
184 Uganda 12027 T 133 133
185 Uganda 12028 G 133 133
186 Uganda 12029 C 133 133
187 Uganda 12030 A 133 133
188 Uganda 12031 G 133 133
189 Uganda 12032 G 133 133
190 Uganda 12033 G 133 133
191 Uganda 12034 T 133 133
192 Uganda 12035 G 133 133
193 Uganda 12036 C 133 133
194 Uganda 12037 T 133 133
195 Uganda 12038 G 133 133
196 Uganda 12039 T 133 133
197 Uganda 12040 A 133 133
198 Uganda 12041 G 133 133
199 Uganda 12042 A 133 133
200 Uganda 12043 C 133 133
201 Uganda 12044 A 133 133
202 Uganda 12045 T 133 133
203 Uganda 12046 A 133 133
204 Uganda 12047 A 133 133
205 Uganda 12048 A 133 133
206 Uganda 12049 C 133 133
207 Uganda 12050 A 133 133
208 Uganda 12051 A 133 133
209 Uganda 12052 G 133 133
210 Uganda 12053 C 133 133
211 Uganda 12054 T 133 133
212 Uganda 12055 T 133 133
213 Uganda 12056 T 133 133
214 Uganda 12057 G 133 133
215 Uganda 12058 T 133 133
216 Uganda 12059 G 133 133
217 Uganda 12060 A 133 133
218 Uganda 12061 A 133 133
219 Uganda 12062 G 133 133
220 Uganda 12063 A 133 133
221 Uganda 12064 A 133 133
222 Uganda 12065 A 133 133
223 Uganda 12066 T 133 133
224 Uganda 12067 G 133 133
225 Uganda 12068 C 133 133
226 Uganda 12069 T 133 133
227 Uganda 12070 G 133 133
228 Uganda 12071 G 133 133
229 Uganda 12072 A 133 133
230 Uganda 12073 C 133 133
231 Uganda 12074 A 133 133
232 Uganda 12075 A 133 133
233 Uganda 12076 C 133 133
234 Uganda 12077 A 133 133
235 Uganda 12078 G 133 133
236 Uganda 12079 G 133 133
237 Uganda 12080 G 133 133
238 Uganda 12081 C 133 133
239 Uganda 12082 A 133 133
240 Uganda 12083 A 133 133
241 Uganda 12084 C 133 133
242 Uganda 12085 C 133 133
243 Uganda 12086 T 133 133
244 Uganda 12087 T 133 133
245 Uganda 12088 A 133 133
246 Uganda 12089 C 133 133
247 Uganda 12090 A 133 133
248 Uganda 12091 A 133 133